Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:122625367-123389105

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305 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr58688 6 122626418 to 122626420 2 + TSS region transcription start site region 58688
Dppa3 6 122626424 to 122630271 3847 + protein coding gene developmental pluripotency-associated 3
Tssr58689 6 122628380 to 122628396 16 + TSS region transcription start site region 58689
Tssr62937 6 122633491 to 122633504 13 - TSS region transcription start site region 62937
Tssr62938 6 122635370 to 122635381 11 - TSS region transcription start site region 62938
Tssr58690 6 122635571 to 122635610 39 + TSS region transcription start site region 58690
Tssr58691 6 122644266 to 122644270 4 + TSS region transcription start site region 58691
Gm8460 6 122644274 to 122644781 507 + pseudogene predicted gene 8460
Cpgi17950 6 122644429 to 122644697 268 CpG island CpG island 17950
Tssr62939 6 122654372 to 122654387 15 - TSS region transcription start site region 62939
Tssr58692 6 122654581 to 122654630 49 + TSS region transcription start site region 58692
Tssr62940 6 122657774 to 122657786 12 - TSS region transcription start site region 62940
Cpgi17951 6 122695963 to 122696116 153 CpG island CpG island 17951
Tssr58693 6 122695971 to 122695976 5 + TSS region transcription start site region 58693
Gm10420 6 122696001 to 122696882 881 + pseudogene predicted gene 10420
Gm10224 6 122698414 to 122699028 614 - pseudogene predicted pseudogene 10224
Tssr62941 6 122699064 to 122699065 1 - TSS region transcription start site region 62941
Tssr58694 6 122706594 to 122706605 11 + TSS region transcription start site region 58694
Nanog 6 122707489 to 122714633 7144 + protein coding gene Nanog homeobox
Tssr58695 6 122707592 to 122707608 16 + TSS region transcription start site region 58695
Slc2a3 6 122727809 to 122801640 73831 - protein coding gene solute carrier family 2 (facilitated glucose transporter), member 3
Tssr62942 6 122728326 to 122728338 12 - TSS region transcription start site region 62942
Tssr62943 6 122728379 to 122728410 31 - TSS region transcription start site region 62943
Tssr62944 6 122729496 to 122729544 48 - TSS region transcription start site region 62944
Tssr62945 6 122729908 to 122729929 21 - TSS region transcription start site region 62945
Tssr62946 6 122730004 to 122730048 44 - TSS region transcription start site region 62946
Tssr62947 6 122730097 to 122730119 22 - TSS region transcription start site region 62947
Tssr62948 6 122730120 to 122730132 12 - TSS region transcription start site region 62948
Tssr62949 6 122732401 to 122732422 21 - TSS region transcription start site region 62949
Tssr62950 6 122732438 to 122732459 21 - TSS region transcription start site region 62950
Cpgi17952 6 122742053 to 122742435 382 CpG island CpG island 17952
Tssr62951 6 122742482 to 122742502 20 - TSS region transcription start site region 62951
Tssr62952 6 122742509 to 122742527 18 - TSS region transcription start site region 62952
Tssr62953 6 122758826 to 122758858 32 - TSS region transcription start site region 62953
Tssr58696 6 122761230 to 122761241 11 + TSS region transcription start site region 58696
Tssr58697 6 122761252 to 122761275 23 + TSS region transcription start site region 58697
Tssr58698 6 122761438 to 122761440 2 + TSS region transcription start site region 58698
Cpgi17953 6 122764253 to 122765287 1034 CpG island CpG island 17953
Tssr62954 6 122764747 to 122764760 13 - TSS region transcription start site region 62954
Tssr62955 6 122765261 to 122765273 12 - TSS region transcription start site region 62955
Tssr58699 6 122770695 to 122770707 12 + TSS region transcription start site region 58699
Tssr62956 6 122779966 to 122779970 4 - TSS region transcription start site region 62956
D6Mit151 6 122785106 to 122785252 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 151
Gm4482 6 122792584 to 122793325 741 - pseudogene predicted gene 4482
Tssr62957 6 122800825 to 122800827 2 - TSS region transcription start site region 62957
Cpgi17954 6 122801336 to 122802365 1029 CpG island CpG island 17954
Tssr62958 6 122801639 to 122801653 14 - TSS region transcription start site region 62958
Tssr62959 6 122801661 to 122801677 16 - TSS region transcription start site region 62959
Tssr62960 6 122801680 to 122801723 43 - TSS region transcription start site region 62960
Tssr62961 6 122801726 to 122801740 14 - TSS region transcription start site region 62961
Tssr2001 6 122801747 to 122801756 9 - TSS region transcription start site region 2001
Tssr62962 6 122802169 to 122802232 63 - TSS region transcription start site region 62962
Cpgi17955 6 122810491 to 122811636 1145 CpG island CpG island 17955
Gm5112 6 122811170 to 122813537 2367 + protein coding gene predicted gene 5112
Tssr58700 6 122811189 to 122811221 32 + TSS region transcription start site region 58700
Tssr58701 6 122811504 to 122811521 17 + TSS region transcription start site region 58701
Gm26826 6 122813619 to 122820614 6995 - antisense lncRNA gene predicted gene, 26826
Cpgi17956 6 122819434 to 122820857 1423 CpG island CpG island 17956
Tssr58702 6 122819888 to 122819938 50 + TSS region transcription start site region 58702
Tssr58703 6 122819939 to 122819950 11 + TSS region transcription start site region 58703
Foxj2 6 122820184 to 122845366 25182 + protein coding gene forkhead box J2
Tssr62963 6 122820606 to 122820625 19 - TSS region transcription start site region 62963
Tssr58704 6 122820778 to 122820802 24 + TSS region transcription start site region 58704
Tssr62964 6 122820854 to 122820857 3 - TSS region transcription start site region 62964
Tssr58705 6 122824635 to 122824647 12 + TSS region transcription start site region 58705
Cpgi17957 6 122826379 to 122826676 297 CpG island CpG island 17957
Tssr58706 6 122826616 to 122826656 40 + TSS region transcription start site region 58706
Tssr58707 6 122826666 to 122826681 15 + TSS region transcription start site region 58707
Tssr58708 6 122826696 to 122826704 8 + TSS region transcription start site region 58708
Mir7231 6 122831377 to 122831437 60 + miRNA gene microRNA 7231
Tssr62965 6 122846512 to 122846535 23 - TSS region transcription start site region 62965
C3ar1 6 122847140 to 122856157 9017 - protein coding gene complement component 3a receptor 1
Tssr62966 6 122847751 to 122847786 35 - TSS region transcription start site region 62966
Tssr62967 6 122847789 to 122847831 42 - TSS region transcription start site region 62967
Tssr62968 6 122847866 to 122847879 13 - TSS region transcription start site region 62968
Tssr58709 6 122847969 to 122847976 7 + TSS region transcription start site region 58709
Tssr58710 6 122848158 to 122848196 38 + TSS region transcription start site region 58710
Tssr62969 6 122848170 to 122848199 29 - TSS region transcription start site region 62969
Tssr62970 6 122848203 to 122848219 16 - TSS region transcription start site region 62970
Tssr62971 6 122848268 to 122848279 11 - TSS region transcription start site region 62971
Tssr62972 6 122848370 to 122848379 9 - TSS region transcription start site region 62972
Tssr62973 6 122848429 to 122848440 11 - TSS region transcription start site region 62973
Tssr62974 6 122848496 to 122848526 30 - TSS region transcription start site region 62974
Tssr62975 6 122848607 to 122848611 4 - TSS region transcription start site region 62975
Tssr62976 6 122848653 to 122848700 47 - TSS region transcription start site region 62976
Tssr62977 6 122848716 to 122848758 42 - TSS region transcription start site region 62977
Tssr62978 6 122848793 to 122848812 19 - TSS region transcription start site region 62978
Tssr62979 6 122848824 to 122848845 21 - TSS region transcription start site region 62979
Tssr62980 6 122848849 to 122848861 12 - TSS region transcription start site region 62980
Tssr62981 6 122848868 to 122848880 12 - TSS region transcription start site region 62981
Tssr62982 6 122849029 to 122849039 10 - TSS region transcription start site region 62982
Tssr62983 6 122849486 to 122849497 11 - TSS region transcription start site region 62983
Tssr62984 6 122849556 to 122849593 37 - TSS region transcription start site region 62984
Tssr62985 6 122849599 to 122849632 33 - TSS region transcription start site region 62985
Tssr62986 6 122849910 to 122849927 17 - TSS region transcription start site region 62986
Tssr62987 6 122850040 to 122850053 13 - TSS region transcription start site region 62987
Tssr62988 6 122850108 to 122850119 11 - TSS region transcription start site region 62988
Tssr62989 6 122850267 to 122850279 12 - TSS region transcription start site region 62989
Tssr62990 6 122850313 to 122850332 19 - TSS region transcription start site region 62990
Tssr62991 6 122850340 to 122850361 21 - TSS region transcription start site region 62991
Tssr62992 6 122850365 to 122850411 46 - TSS region transcription start site region 62992
Tssr58711 6 122850457 to 122850509 52 + TSS region transcription start site region 58711
Tssr62993 6 122850459 to 122850504 45 - TSS region transcription start site region 62993
Tssr62994 6 122850565 to 122850681 116 - TSS region transcription start site region 62994
Tssr58712 6 122850575 to 122850590 15 + TSS region transcription start site region 58712
Tssr58713 6 122850631 to 122850658 27 + TSS region transcription start site region 58713
Tssr62995 6 122850682 to 122850735 53 - TSS region transcription start site region 62995
Tssr62996 6 122850742 to 122850872 130 - TSS region transcription start site region 62996
Tssr62997 6 122850884 to 122850938 54 - TSS region transcription start site region 62997
Tssr62998 6 122850939 to 122851009 70 - TSS region transcription start site region 62998
Tssr62999 6 122851010 to 122851062 52 - TSS region transcription start site region 62999
Tssr63000 6 122851067 to 122851085 18 - TSS region transcription start site region 63000
Tssr63001 6 122851090 to 122851101 11 - TSS region transcription start site region 63001
Tssr63002 6 122852848 to 122852868 20 - TSS region transcription start site region 63002
Tssr58714 6 122852935 to 122852956 21 + TSS region transcription start site region 58714
Tssr63003 6 122855560 to 122855578 18 - TSS region transcription start site region 63003
Tssr63004 6 122855852 to 122855856 4 - TSS region transcription start site region 63004
Tssr63005 6 122856022 to 122856058 36 - TSS region transcription start site region 63005
Tssr63006 6 122856068 to 122856089 21 - TSS region transcription start site region 63006
Tssr63007 6 122856097 to 122856110 13 - TSS region transcription start site region 63007
Tssr63008 6 122856151 to 122856163 12 - TSS region transcription start site region 63008
Cpgi17958 6 122874291 to 122875104 813 CpG island CpG island 17958
Tssr58715 6 122874526 to 122874573 47 + TSS region transcription start site region 58715
Necap1 6 122874557 to 122888941 14384 + protein coding gene NECAP endocytosis associated 1
Tssr58716 6 122875346 to 122875351 5 + TSS region transcription start site region 58716
Tssr58717 6 122882897 to 122882908 11 + TSS region transcription start site region 58717
Gm5316 6 122899731 to 122900538 807 - pseudogene predicted gene 5316
Tssr2002 6 122901587 to 122901588 1 + TSS region transcription start site region 2002
Tssr63009 6 122921480 to 122921516 36 - TSS region transcription start site region 63009
Tssr2003 6 122921788 to 122921799 11 + TSS region transcription start site region 2003
Tssr58718 6 122921805 to 122921865 60 + TSS region transcription start site region 58718
Clec4a1 6 122921848 to 122934619 12771 + protein coding gene C-type lectin domain family 4, member a1
Tssr58719 6 122922552 to 122922577 25 + TSS region transcription start site region 58719
Tssr58720 6 122922596 to 122922619 23 + TSS region transcription start site region 58720
Tssr58721 6 122922744 to 122922756 12 + TSS region transcription start site region 58721
Tssr58722 6 122923676 to 122923726 50 + TSS region transcription start site region 58722
Tssr58723 6 122928986 to 122929012 26 + TSS region transcription start site region 58723
Tssr58724 6 122932190 to 122932204 14 + TSS region transcription start site region 58724
Tssr58725 6 122932222 to 122932239 17 + TSS region transcription start site region 58725
Tssr58726 6 122933771 to 122933791 20 + TSS region transcription start site region 58726
Tssr58727 6 122933848 to 122933872 24 + TSS region transcription start site region 58727
Tssr58728 6 122933901 to 122933920 19 + TSS region transcription start site region 58728
Tssr58729 6 122933964 to 122933976 12 + TSS region transcription start site region 58729
Tssr58730 6 122933983 to 122934003 20 + TSS region transcription start site region 58730
Tssr63010 6 122933993 to 122934004 11 - TSS region transcription start site region 63010
Tssr58731 6 122934024 to 122934039 15 + TSS region transcription start site region 58731
Tssr63011 6 122934041 to 122934088 47 - TSS region transcription start site region 63011
Tssr58732 6 122934076 to 122934126 50 + TSS region transcription start site region 58732
Tssr58733 6 122934142 to 122934157 15 + TSS region transcription start site region 58733
Tssr58734 6 122947048 to 122947090 42 + TSS region transcription start site region 58734
Tssr63012 6 122952401 to 122952416 15 - TSS region transcription start site region 63012
Tssr58735 6 122952420 to 122952440 20 + TSS region transcription start site region 58735
Tssr58736 6 122952450 to 122952505 55 + TSS region transcription start site region 58736
Clec4a3 6 122952515 to 122969875 17360 + protein coding gene C-type lectin domain family 4, member a3
Tssr58737 6 122952533 to 122952555 22 + TSS region transcription start site region 58737
Tssr63013 6 122952539 to 122952552 13 - TSS region transcription start site region 63013
Tssr58738 6 122952632 to 122952650 18 + TSS region transcription start site region 58738
Tssr58739 6 122952684 to 122952697 13 + TSS region transcription start site region 58739
Tssr58740 6 122952701 to 122952763 62 + TSS region transcription start site region 58740
Tssr58741 6 122952794 to 122952809 15 + TSS region transcription start site region 58741
Tssr58742 6 122952810 to 122952832 22 + TSS region transcription start site region 58742
Tssr58743 6 122969439 to 122969457 18 + TSS region transcription start site region 58743
Tssr58744 6 122990295 to 122990308 13 + TSS region transcription start site region 58744
Tssr58745 6 122990350 to 122990365 15 + TSS region transcription start site region 58745
Clec4a4 6 122990367 to 123024105 33738 + protein coding gene C-type lectin domain family 4, member a4
D6Mit300 6 122991353 to 122991456 103 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 300
Clec4b1 6 123049962 to 123071555 21593 + protein coding gene C-type lectin domain family 4, member b1
Tssr58746 6 123049967 to 123049979 12 + TSS region transcription start site region 58746
Tssr58747 6 123049980 to 123049991 11 + TSS region transcription start site region 58747
Tssr58748 6 123049999 to 123050021 22 + TSS region transcription start site region 58748
Tssr58749 6 123050026 to 123050064 38 + TSS region transcription start site region 58749
Gm44132 6 123114595 to 123114745 150 + pseudogene predicted gene, 44132
Tssr58750 6 123122656 to 123122732 76 + TSS region transcription start site region 58750
Clec4a2 6 123122690 to 123143999 21309 + protein coding gene C-type lectin domain family 4, member a2
Tssr58751 6 123123313 to 123123342 29 + TSS region transcription start site region 58751
Tssr58752 6 123123353 to 123123369 16 + TSS region transcription start site region 58752
Tssr58753 6 123123385 to 123123416 31 + TSS region transcription start site region 58753
Tssr58754 6 123123423 to 123123484 61 + TSS region transcription start site region 58754
Tssr58755 6 123123514 to 123123528 14 + TSS region transcription start site region 58755
Tssr58756 6 123123553 to 123123564 11 + TSS region transcription start site region 58756
Tssr58757 6 123124430 to 123124441 11 + TSS region transcription start site region 58757
Tssr58758 6 123124514 to 123124529 15 + TSS region transcription start site region 58758
Tssr58759 6 123124540 to 123124564 24 + TSS region transcription start site region 58759
Tssr58760 6 123129809 to 123129818 9 + TSS region transcription start site region 58760
Tssr58761 6 123138409 to 123138427 18 + TSS region transcription start site region 58761
Tssr58762 6 123138432 to 123138444 12 + TSS region transcription start site region 58762
Gm44147 6 123150076 to 123150169 93 + pseudogene predicted gene, 44147
Tssr2004 6 123172888 to 123172896 8 + TSS region transcription start site region 2004
Clec4b2 6 123172893 to 123204671 31778 + protein coding gene C-type lectin domain family 4, member b2
Gm22946 6 123195632 to 123195713 81 - snRNA gene predicted gene, 22946
Tssr58763 6 123207513 to 123207517 4 + TSS region transcription start site region 58763
Gm5883 6 123218953 to 123219447 494 - pseudogene predicted gene 5883
Clec4n 6 123229843 to 123247021 17178 + protein coding gene C-type lectin domain family 4, member n
Tssr58764 6 123229847 to 123229863 16 + TSS region transcription start site region 58764
Tssr58765 6 123229922 to 123229927 5 + TSS region transcription start site region 58765
Tssr58766 6 123237096 to 123237121 25 + TSS region transcription start site region 58766
Tssr58767 6 123253080 to 123253113 33 + TSS region transcription start site region 58767
Tssr58768 6 123253132 to 123253142 10 + TSS region transcription start site region 58768
Tssr2005 6 123260225 to 123260234 9 - TSS region transcription start site region 2005
Tssr63014 6 123260255 to 123260262 7 - TSS region transcription start site region 63014