Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:121000012-124220039

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689 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mical3 6 120931707 to 121130999 199292 - protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing 3
Tssr62791 6 121003005 to 121003012 7 - TSS region transcription start site region 62791
Tssr62792 6 121003034 to 121003052 18 - TSS region transcription start site region 62792
Tssr62793 6 121003066 to 121003076 10 - TSS region transcription start site region 62793
Tssr62794 6 121003099 to 121003134 35 - TSS region transcription start site region 62794
Gm9878 6 121026507 to 121030990 4483 + unclassified gene predicted gene 9878
Tssr62795 6 121027435 to 121027442 7 - TSS region transcription start site region 62795
Tssr62796 6 121027446 to 121027459 13 - TSS region transcription start site region 62796
Tssr58561 6 121027500 to 121027536 36 + TSS region transcription start site region 58561
Tssr62797 6 121031640 to 121031643 3 - TSS region transcription start site region 62797
Tssr62798 6 121044124 to 121044128 4 - TSS region transcription start site region 62798
Gm4651 6 121064464 to 121069954 5490 + unclassified non-coding RNA gene predicted gene 4651
Tssr62799 6 121081589 to 121081608 19 - TSS region transcription start site region 62799
Cpgi17931 6 121087739 to 121088109 370 CpG island CpG island 17931
Tssr62800 6 121103522 to 121103530 8 - TSS region transcription start site region 62800
Cpgi17932 6 121109142 to 121110548 1406 CpG island CpG island 17932
Tssr62801 6 121110102 to 121110171 69 - TSS region transcription start site region 62801
D6Mit216 6 121115242 to 121115387 145 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 216
Dbm1 6 121115387 to 78629504 -42485883 QTL diabetes modifier 1
Minpp1-ps 6 121117111 to 121118228 1117 + pseudogene multiple inositol polyphosphate histidine phosphatase 1, pseudogene
D6Oda7 6 121125082 to 121125264 182 DNA segment DNA segment, Chr 6, Sen-ichi Oda 7
Cpgi17933 6 121129522 to 121129791 269 CpG island CpG island 17933
Cpgi17934 6 121130028 to 121130435 407 CpG island CpG island 17934
Cpgi17935 6 121130758 to 121131197 439 CpG island CpG island 17935
Tssr62802 6 121130993 to 121131004 11 - TSS region transcription start site region 62802
Tssr62803 6 121131013 to 121131049 36 - TSS region transcription start site region 62803
Tssr62804 6 121131050 to 121131065 15 - TSS region transcription start site region 62804
Tssr62805 6 121131070 to 121131079 9 - TSS region transcription start site region 62805
Gm30842 6 121137464 to 121155124 17660 + lncRNA gene predicted gene, 30842
Tssr58562 6 121137481 to 121137496 15 + TSS region transcription start site region 58562
Tssr62806 6 121173714 to 121173748 34 - TSS region transcription start site region 62806
Tssr62807 6 121173775 to 121173783 8 - TSS region transcription start site region 62807
Cpgi17936 6 121183662 to 121184641 979 CpG island CpG island 17936
Pex26 6 121183667 to 121198837 15170 + protein coding gene peroxisomal biogenesis factor 26
Tssr58563 6 121183884 to 121183941 57 + TSS region transcription start site region 58563
Tssr58564 6 121185456 to 121185471 15 + TSS region transcription start site region 58564
Gm44014 6 121196675 to 121198183 1508 - unclassified gene predicted gene, 44014
Gm38651 6 121200553 to 121204778 4225 + lncRNA gene predicted gene, 38651
Cpgi17937 6 121210496 to 121211449 953 CpG island CpG island 17937
Tssr58565 6 121210678 to 121210687 9 + TSS region transcription start site region 58565
Tssr58566 6 121210712 to 121210719 7 + TSS region transcription start site region 58566
Tssr58567 6 121210731 to 121210758 27 + TSS region transcription start site region 58567
Tuba8 6 121210734 to 121226098 15364 + protein coding gene tubulin, alpha 8
Tssr58568 6 121210771 to 121210786 15 + TSS region transcription start site region 58568
Tssr58569 6 121210791 to 121210813 22 + TSS region transcription start site region 58569
Gm15856 6 121223692 to 121226153 2461 - antisense lncRNA gene predicted gene 15856
Tssr62808 6 121226168 to 121226184 16 - TSS region transcription start site region 62808
Tssr58570 6 121226327 to 121226334 7 + TSS region transcription start site region 58570
Cpgi17938 6 121245600 to 121246061 461 CpG island CpG island 17938
Tssr62809 6 121245742 to 121245755 13 - TSS region transcription start site region 62809
Tssr62810 6 121245757 to 121245802 45 - TSS region transcription start site region 62810
Tssr58571 6 121245903 to 121245908 5 + TSS region transcription start site region 58571
Usp18 6 121245906 to 121270917 25011 + protein coding gene ubiquitin specific peptidase 18
Tssr58572 6 121245929 to 121245946 17 + TSS region transcription start site region 58572
Tssr58573 6 121246656 to 121246670 14 + TSS region transcription start site region 58573
Tssr58574 6 121249369 to 121249385 16 + TSS region transcription start site region 58574
Tssr58575 6 121252566 to 121252578 12 + TSS region transcription start site region 58575
Tssr58576 6 121252932 to 121252955 23 + TSS region transcription start site region 58576
Gm44148 6 121255203 to 121272685 17482 - lincRNA gene predicted gene, 44148
Tssr58577 6 121256877 to 121256899 22 + TSS region transcription start site region 58577
Tssr58578 6 121256933 to 121256947 14 + TSS region transcription start site region 58578
Tssr58579 6 121256983 to 121256994 11 + TSS region transcription start site region 58579
Tssr58580 6 121257195 to 121257214 19 + TSS region transcription start site region 58580
Tssr58581 6 121257247 to 121257261 14 + TSS region transcription start site region 58581
Tssr58582 6 121260962 to 121260989 27 + TSS region transcription start site region 58582
Tssr58583 6 121261445 to 121261458 13 + TSS region transcription start site region 58583
Tssr58584 6 121263918 to 121263930 12 + TSS region transcription start site region 58584
Tssr58585 6 121264028 to 121264042 14 + TSS region transcription start site region 58585
Tssr58586 6 121264087 to 121264110 23 + TSS region transcription start site region 58586
Tssr58587 6 121264119 to 121264137 18 + TSS region transcription start site region 58587
Tssr58588 6 121270470 to 121270487 17 + TSS region transcription start site region 58588
Tssr58589 6 121270538 to 121270550 12 + TSS region transcription start site region 58589
Tssr62811 6 121272700 to 121272727 27 - TSS region transcription start site region 62811
Tssr58590 6 121300280 to 121300297 17 + TSS region transcription start site region 58590
Slc6a13 6 121300296 to 121337721 37425 + protein coding gene solute carrier family 6 (neurotransmitter transporter, GABA), member 13
Tssr58591 6 121300732 to 121300755 23 + TSS region transcription start site region 58591
Tssr58592 6 121318238 to 121318256 18 + TSS region transcription start site region 58592
Gm24855 6 121325580 to 121325676 96 - miRNA gene predicted gene, 24855
Tssr58593 6 121336383 to 121336408 25 + TSS region transcription start site region 58593
Tssr58594 6 121336800 to 121336850 50 + TSS region transcription start site region 58594
Tssr58595 6 121336861 to 121336872 11 + TSS region transcription start site region 58595
Tssr58596 6 121341988 to 121342011 23 + TSS region transcription start site region 58596
Tssr58597 6 121342456 to 121342467 11 + TSS region transcription start site region 58597
Tssr58598 6 121342504 to 121342515 11 + TSS region transcription start site region 58598
Tssr58599 6 121342517 to 121342526 9 + TSS region transcription start site region 58599
Tssr58600 6 121342560 to 121342585 25 + TSS region transcription start site region 58600
Tssr58601 6 121342869 to 121342880 11 + TSS region transcription start site region 58601
Tssr58602 6 121342882 to 121342924 42 + TSS region transcription start site region 58602
Tssr58603 6 121343052 to 121343073 21 + TSS region transcription start site region 58603
Slc6a12 6 121343076 to 121365775 22699 + protein coding gene solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
Tssr62812 6 121343276 to 121343303 27 - TSS region transcription start site region 62812
Tssr58604 6 121343312 to 121343320 8 + TSS region transcription start site region 58604
Tssr58605 6 121343329 to 121343341 12 + TSS region transcription start site region 58605
Tssr58606 6 121343385 to 121343414 29 + TSS region transcription start site region 58606
Tssr58607 6 121343814 to 121343827 13 + TSS region transcription start site region 58607
Tssr58608 6 121343931 to 121343951 20 + TSS region transcription start site region 58608
Tssr58609 6 121343961 to 121343974 13 + TSS region transcription start site region 58609
Tssr58610 6 121346648 to 121346671 23 + TSS region transcription start site region 58610
Tssr58611 6 121346678 to 121346708 30 + TSS region transcription start site region 58611
Tssr58612 6 121346712 to 121346731 19 + TSS region transcription start site region 58612
Tssr58613 6 121356401 to 121356416 15 + TSS region transcription start site region 58613
Tssr58614 6 121356789 to 121356816 27 + TSS region transcription start site region 58614
Tssr58615 6 121356818 to 121356847 29 + TSS region transcription start site region 58615
Tssr58616 6 121356872 to 121356877 5 + TSS region transcription start site region 58616
Tssr58617 6 121356879 to 121356892 13 + TSS region transcription start site region 58617
Tssr58618 6 121356898 to 121356903 5 + TSS region transcription start site region 58618
Tssr58619 6 121356923 to 121356926 3 + TSS region transcription start site region 58619
Tssr58620 6 121357515 to 121357549 34 + TSS region transcription start site region 58620
Tssr58621 6 121359248 to 121359292 44 + TSS region transcription start site region 58621
Tssr58622 6 121359494 to 121359511 17 + TSS region transcription start site region 58622
Tssr58623 6 121359681 to 121359692 11 + TSS region transcription start site region 58623
Tssr58624 6 121363226 to 121363238 12 + TSS region transcription start site region 58624
Tssr58625 6 121363682 to 121363722 40 + TSS region transcription start site region 58625
Tssr58626 6 121365198 to 121365227 29 + TSS region transcription start site region 58626
Tssr58627 6 121365846 to 121365863 17 + TSS region transcription start site region 58627
Tssr58628 6 121365926 to 121365937 11 + TSS region transcription start site region 58628
Iqsec3 6 121372933 to 121473678 100745 - protein coding gene IQ motif and Sec7 domain 3
Cpgi17939 6 121412368 to 121413754 1386 CpG island CpG island 17939
Cpgi17940 6 121428326 to 121428540 214 CpG island CpG island 17940
Cpgi17941 6 121462843 to 121463249 406 CpG island CpG island 17941
Cpgi17942 6 121472856 to 121473908 1052 CpG island CpG island 17942
Tssr62813 6 121473588 to 121473628 40 - TSS region transcription start site region 62813
Tssr62814 6 121473630 to 121473680 50 - TSS region transcription start site region 62814
Gm43922 6 121538196 to 121538523 327 + pseudogene predicted gene, 43922
Gm43933 6 121547594 to 121547860 266 - pseudogene predicted gene, 43933
Gm43934 6 121560201 to 121560588 387 + pseudogene predicted gene, 43934
Gm43945 6 121625712 to 121626465 753 + pseudogene predicted gene, 43945
Tssr1993 6 121630434 to 121630437 3 + TSS region transcription start site region 1993
A2m 6 121636166 to 121679238 43072 + protein coding gene alpha-2-macroglobulin
Tssr58629 6 121636218 to 121636237 19 + TSS region transcription start site region 58629
Tssr58630 6 121636258 to 121636265 7 + TSS region transcription start site region 58630
Cpgi17943 6 121636262 to 121636419 157 CpG island CpG island 17943
Tssr58631 6 121636268 to 121636279 11 + TSS region transcription start site region 58631
Tssr58632 6 121638288 to 121638299 11 + TSS region transcription start site region 58632
Tssr58633 6 121641334 to 121641352 18 + TSS region transcription start site region 58633
Tssr58634 6 121644896 to 121644927 31 + TSS region transcription start site region 58634
Gm44018 6 121708643 to 121709049 406 - pseudogene predicted gene, 44018
Tssr58635 6 121732971 to 121732972 1 + TSS region transcription start site region 58635
Gm7298 6 121734495 to 121784639 50144 + protein coding gene predicted gene 7298
Gm46973 6 121759018 to 121759151 133 - pseudogene predicted gene, 46973
Tssr58636 6 121838450 to 121838470 20 + TSS region transcription start site region 58636
Tssr58637 6 121838489 to 121838510 21 + TSS region transcription start site region 58637
Tssr58638 6 121838514 to 121838528 14 + TSS region transcription start site region 58638
Mug1 6 121838541 to 121889057 50516 + protein coding gene murinoglobulin 1
Tssr58639 6 121838625 to 121838639 14 + TSS region transcription start site region 58639
Tssr58640 6 121838672 to 121838681 9 + TSS region transcription start site region 58640
Tssr58641 6 121846717 to 121846742 25 + TSS region transcription start site region 58641
Tssr58642 6 121846815 to 121846846 31 + TSS region transcription start site region 58642
Tssr58643 6 121847818 to 121847822 4 + TSS region transcription start site region 58643
Tssr58644 6 121847963 to 121847978 15 + TSS region transcription start site region 58644
Tssr58645 6 121861119 to 121861137 18 + TSS region transcription start site region 58645
Tssr58646 6 121865726 to 121865745 19 + TSS region transcription start site region 58646
Tssr58647 6 121865819 to 121865848 29 + TSS region transcription start site region 58647
Tssr58648 6 121870580 to 121870595 15 + TSS region transcription start site region 58648
Tssr58649 6 121871310 to 121871321 11 + TSS region transcription start site region 58649
Gm44173 6 121914990 to 121915100 110 - pseudogene predicted gene, 44173
Mug4-ps 6 121916430 to 121956147 39717 + pseudogene murinoglobulin 4, pseudogene
Mug2 6 122006761 to 122085965 79204 + protein coding gene murinoglobulin 2
Gm44184 6 122034504 to 122034635 131 - pseudogene predicted gene, 44184
Tssr58650 6 122078704 to 122078707 3 + TSS region transcription start site region 58650
Gm10319 6 122136628 to 122150958 14330 + pseudogene predicted pseudogene 10319
Tssr58651 6 122136628 to 122136638 10 + TSS region transcription start site region 58651
Mug-ps1 6 122176053 to 122248566 72513 + pseudogene murinoglobulin, pseudogene 1
Gm27703 6 122200137 to 122200246 109 + miRNA gene predicted gene, 27703
Gm46974 6 122206326 to 122206643 317 - pseudogene predicted gene, 46974
Klrg1 6 122270596 to 122282833 12237 - protein coding gene killer cell lectin-like receptor subfamily G, member 1
Tssr62815 6 122279820 to 122279843 23 - TSS region transcription start site region 62815
Tssr62816 6 122279931 to 122279956 25 - TSS region transcription start site region 62816
Tssr62817 6 122282588 to 122282628 40 - TSS region transcription start site region 62817
Tssr62818 6 122282787 to 122282798 11 - TSS region transcription start site region 62818
Tssr62819 6 122282810 to 122282821 11 - TSS region transcription start site region 62819
Tssr62820 6 122282890 to 122282908 18 - TSS region transcription start site region 62820
Tssr62821 6 122282910 to 122282921 11 - TSS region transcription start site region 62821
Tssr62822 6 122282946 to 122282955 9 - TSS region transcription start site region 62822
Tssr58652 6 122283003 to 122283025 22 + TSS region transcription start site region 58652
Tssr62823 6 122283229 to 122283242 13 - TSS region transcription start site region 62823
Tssr58653 6 122294094 to 122294111 17 + TSS region transcription start site region 58653
Tssr58654 6 122294147 to 122294163 16 + TSS region transcription start site region 58654
Tssr58655 6 122294174 to 122294185 11 + TSS region transcription start site region 58655
Tssr62824 6 122294474 to 122294488 14 - TSS region transcription start site region 62824
Gm6637 6 122295664 to 122296045 381 + pseudogene predicted gene 6637
Gm27826 6 122305544 to 122305798 254 - unclassified non-coding RNA gene predicted gene, 27826
Gm44227 6 122305948 to 122306188 240 + pseudogene predicted gene, 44227
Cpgi17944 6 122308569 to 122309336 767 CpG island CpG island 17944
Tssr58656 6 122308656 to 122308683 27 + TSS region transcription start site region 58656
Tssr58657 6 122308684 to 122308711 27 + TSS region transcription start site region 58657
Tssr58658 6 122308814 to 122308839 25 + TSS region transcription start site region 58658
Tssr58659 6 122308923 to 122308934 11 + TSS region transcription start site region 58659
Tssr58660 6 122308953 to 122308966 13 + TSS region transcription start site region 58660
Tssr58661 6 122308969 to 122309018 49 + TSS region transcription start site region 58661
M6pr 6 122309010 to 122317677 8667 + protein coding gene mannose-6-phosphate receptor, cation dependent
Tssr1994 6 122309043 to 122309045 2 + TSS region transcription start site region 1994
Tssr1995 6 122309057 to 122309071 14 + TSS region transcription start site region 1995
Tssr58662 6 122316082 to 122316092 10 + TSS region transcription start site region 58662
Phc1 6 122317731 to 122340227 22496 - protein coding gene polyhomeotic 1
Tssr62825 6 122323556 to 122323585 29 - TSS region transcription start site region 62825
Tssr62826 6 122325490 to 122325519 29 - TSS region transcription start site region 62826
Tssr62827 6 122325687 to 122325700 13 - TSS region transcription start site region 62827
Tssr62828 6 122333328 to 122333347 19 - TSS region transcription start site region 62828
Tssr62829 6 122339102 to 122339114 12 - TSS region transcription start site region 62829