Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:120525911-121306974

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq2 6 106005405 to 120917141 14911736 QTL inflammatory bowel disease QTL 2
Hdhd5 6 120509494 to 120531319 21825 - protein coding gene haloacid dehalogenase like hydrolase domain containing 5
Cpgi17924 6 120530851 to 120531734 883 CpG island CpG island 17924
Tssr62781 6 120531289 to 120531328 39 - TSS region transcription start site region 62781
Tssr58541 6 120554784 to 120554793 9 + TSS region transcription start site region 58541
1700072O05Rik 6 120554796 to 120562879 8083 + lincRNA gene RIKEN cDNA 1700072O05 gene
Gm44074 6 120577371 to 120577707 336 - pseudogene predicted gene, 44074
Cpgi17925 6 120579565 to 120579744 179 CpG island CpG island 17925
Gm44124 6 120579705 to 120580176 471 - unclassified gene predicted gene, 44124
Tssr58542 6 120605717 to 120605727 10 + TSS region transcription start site region 58542
Tssr58543 6 120644403 to 120644419 16 + TSS region transcription start site region 58543
Cpgi17926 6 120665359 to 120667510 2151 CpG island CpG island 17926
Tssr58544 6 120666300 to 120666354 54 + TSS region transcription start site region 58544
Cecr2 6 120666369 to 120771190 104821 + protein coding gene CECR2, histone acetyl-lysine reader
Tssr58545 6 120666388 to 120666424 36 + TSS region transcription start site region 58545
D6Mit369 6 120668275 to 120668396 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 369
Tssr58546 6 120742754 to 120742755 1 + TSS region transcription start site region 58546
Slc25a18 6 120773511 to 120794169 20658 + protein coding gene solute carrier family 25 (mitochondrial carrier), member 18
Tssr58547 6 120773549 to 120773579 30 + TSS region transcription start site region 58547
Tssr58548 6 120773584 to 120773586 2 + TSS region transcription start site region 58548
Tssr58549 6 120773592 to 120773597 5 + TSS region transcription start site region 58549
Tssr58550 6 120773611 to 120773624 13 + TSS region transcription start site region 58550
Tssr58551 6 120773633 to 120773636 3 + TSS region transcription start site region 58551
Tssr58552 6 120776511 to 120776533 22 + TSS region transcription start site region 58552
Tssr58553 6 120794063 to 120794069 6 + TSS region transcription start site region 58553
Atp6v1e1 6 120795244 to 120822685 27441 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit E1
Gm25193 6 120797574 to 120797670 96 - miRNA gene predicted gene, 25193
Tssr58554 6 120817767 to 120817769 2 + TSS region transcription start site region 58554
Gm19245 6 120817768 to 120818097 329 + pseudogene predicted gene, 19245
Cpgi17927 6 120822264 to 120822855 591 CpG island CpG island 17927
Tssr62782 6 120822664 to 120822675 11 - TSS region transcription start site region 62782
Tssr62783 6 120822680 to 120822707 27 - TSS region transcription start site region 62783
Tssr62784 6 120822713 to 120822756 43 - TSS region transcription start site region 62784
Gm38889 6 120823013 to 120836166 13153 - lncRNA gene predicted gene, 38889
2610024L02Rik 6 120835396 to 120836073 677 unclassified gene RIKEN cDNA 2610024L02 gene
Cpgi17928 6 120835831 to 120836844 1013 CpG island CpG island 17928
Tssr58555 6 120836201 to 120836257 56 + TSS region transcription start site region 58555
Bcl2l13 6 120836217 to 120892842 56625 + protein coding gene BCL2-like 13 (apoptosis facilitator)
Tssr58556 6 120836268 to 120836283 15 + TSS region transcription start site region 58556
Tssr58557 6 120870037 to 120870041 4 + TSS region transcription start site region 58557
Bid 6 120893119 to 120917141 24022 - protein coding gene BH3 interacting domain death agonist
Gm17812 6 120908673 to 120908990 317 + pseudogene predicted gene, 17812
Gm44260 6 120912900 to 120914993 2093 - unclassified gene predicted gene, 44260
Cpgi17929 6 120915911 to 120916974 1063 CpG island CpG island 17929
Tssr62785 6 120916764 to 120916780 16 - TSS region transcription start site region 62785
Tssr62786 6 120916782 to 120916807 25 - TSS region transcription start site region 62786
Tssr62787 6 120916813 to 120916867 54 - TSS region transcription start site region 62787
Tssr58558 6 120927165 to 120927183 18 + TSS region transcription start site region 58558
Mical3 6 120931707 to 121130999 199292 - protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing 3
Tssr58559 6 120932854 to 120932865 11 + TSS region transcription start site region 58559
Tssr58560 6 120932873 to 120932890 17 + TSS region transcription start site region 58560
Tssr62788 6 120933805 to 120933809 4 - TSS region transcription start site region 62788
Gm43916 6 120951901 to 120952867 966 + antisense lncRNA gene predicted gene, 43916
Cpgi17930 6 120958295 to 120959045 750 CpG island CpG island 17930
Gm43915 6 120958844 to 120997498 38654 + antisense lncRNA gene predicted gene, 43915
Tssr62789 6 120971398 to 120971437 39 - TSS region transcription start site region 62789
Tssr62790 6 120971609 to 120971638 29 - TSS region transcription start site region 62790
Tssr62791 6 121003005 to 121003012 7 - TSS region transcription start site region 62791
Tssr62792 6 121003034 to 121003052 18 - TSS region transcription start site region 62792
Tssr62793 6 121003066 to 121003076 10 - TSS region transcription start site region 62793
Tssr62794 6 121003099 to 121003134 35 - TSS region transcription start site region 62794
Gm9878 6 121026507 to 121030990 4483 + unclassified gene predicted gene 9878
Tssr62795 6 121027435 to 121027442 7 - TSS region transcription start site region 62795
Tssr62796 6 121027446 to 121027459 13 - TSS region transcription start site region 62796
Tssr58561 6 121027500 to 121027536 36 + TSS region transcription start site region 58561
Tssr62797 6 121031640 to 121031643 3 - TSS region transcription start site region 62797
Tssr62798 6 121044124 to 121044128 4 - TSS region transcription start site region 62798
Gm4651 6 121064464 to 121069954 5490 + unclassified non-coding RNA gene predicted gene 4651
Tssr62799 6 121081589 to 121081608 19 - TSS region transcription start site region 62799
Cpgi17931 6 121087739 to 121088109 370 CpG island CpG island 17931
Tssr62800 6 121103522 to 121103530 8 - TSS region transcription start site region 62800
Cpgi17932 6 121109142 to 121110548 1406 CpG island CpG island 17932
Tssr62801 6 121110102 to 121110171 69 - TSS region transcription start site region 62801
D6Mit216 6 121115242 to 121115387 145 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 216
Dbm1 6 121115387 to 78629504 -42485883 QTL diabetes modifier 1
Minpp1-ps 6 121117111 to 121118228 1117 + pseudogene multiple inositol polyphosphate histidine phosphatase 1, pseudogene
D6Oda7 6 121125082 to 121125264 182 DNA segment DNA segment, Chr 6, Sen-ichi Oda 7
Cpgi17933 6 121129522 to 121129791 269 CpG island CpG island 17933
Cpgi17934 6 121130028 to 121130435 407 CpG island CpG island 17934
Cpgi17935 6 121130758 to 121131197 439 CpG island CpG island 17935
Tssr62802 6 121130993 to 121131004 11 - TSS region transcription start site region 62802
Tssr62803 6 121131013 to 121131049 36 - TSS region transcription start site region 62803
Tssr62804 6 121131050 to 121131065 15 - TSS region transcription start site region 62804
Tssr62805 6 121131070 to 121131079 9 - TSS region transcription start site region 62805
Gm30842 6 121137464 to 121155124 17660 + lncRNA gene predicted gene, 30842
Tssr58562 6 121137481 to 121137496 15 + TSS region transcription start site region 58562
Tssr62806 6 121173714 to 121173748 34 - TSS region transcription start site region 62806
Tssr62807 6 121173775 to 121173783 8 - TSS region transcription start site region 62807
Cpgi17936 6 121183662 to 121184641 979 CpG island CpG island 17936
Pex26 6 121183667 to 121198837 15170 + protein coding gene peroxisomal biogenesis factor 26
Tssr58563 6 121183884 to 121183941 57 + TSS region transcription start site region 58563
Tssr58564 6 121185456 to 121185471 15 + TSS region transcription start site region 58564
Gm44014 6 121196675 to 121198183 1508 - unclassified gene predicted gene, 44014
Gm38651 6 121200553 to 121204778 4225 + lncRNA gene predicted gene, 38651
Cpgi17937 6 121210496 to 121211449 953 CpG island CpG island 17937
Tssr58565 6 121210678 to 121210687 9 + TSS region transcription start site region 58565
Tssr58566 6 121210712 to 121210719 7 + TSS region transcription start site region 58566
Tssr58567 6 121210731 to 121210758 27 + TSS region transcription start site region 58567
Tuba8 6 121210734 to 121226098 15364 + protein coding gene tubulin, alpha 8
Tssr58568 6 121210771 to 121210786 15 + TSS region transcription start site region 58568
Tssr58569 6 121210791 to 121210813 22 + TSS region transcription start site region 58569
Gm15856 6 121223692 to 121226153 2461 - antisense lncRNA gene predicted gene 15856
Tssr62808 6 121226168 to 121226184 16 - TSS region transcription start site region 62808
Tssr58570 6 121226327 to 121226334 7 + TSS region transcription start site region 58570
Cpgi17938 6 121245600 to 121246061 461 CpG island CpG island 17938
Tssr62809 6 121245742 to 121245755 13 - TSS region transcription start site region 62809
Tssr62810 6 121245757 to 121245802 45 - TSS region transcription start site region 62810
Tssr58571 6 121245903 to 121245908 5 + TSS region transcription start site region 58571
Usp18 6 121245906 to 121270917 25011 + protein coding gene ubiquitin specific peptidase 18
Tssr58572 6 121245929 to 121245946 17 + TSS region transcription start site region 58572
Tssr58573 6 121246656 to 121246670 14 + TSS region transcription start site region 58573
Tssr58574 6 121249369 to 121249385 16 + TSS region transcription start site region 58574
Tssr58575 6 121252566 to 121252578 12 + TSS region transcription start site region 58575
Tssr58576 6 121252932 to 121252955 23 + TSS region transcription start site region 58576
Gm44148 6 121255203 to 121272685 17482 - lincRNA gene predicted gene, 44148
Tssr58577 6 121256877 to 121256899 22 + TSS region transcription start site region 58577
Tssr58578 6 121256933 to 121256947 14 + TSS region transcription start site region 58578
Tssr58579 6 121256983 to 121256994 11 + TSS region transcription start site region 58579
Tssr58580 6 121257195 to 121257214 19 + TSS region transcription start site region 58580
Tssr58581 6 121257247 to 121257261 14 + TSS region transcription start site region 58581
Tssr58582 6 121260962 to 121260989 27 + TSS region transcription start site region 58582
Tssr58583 6 121261445 to 121261458 13 + TSS region transcription start site region 58583
Tssr58584 6 121263918 to 121263930 12 + TSS region transcription start site region 58584
Tssr58585 6 121264028 to 121264042 14 + TSS region transcription start site region 58585
Tssr58586 6 121264087 to 121264110 23 + TSS region transcription start site region 58586
Tssr58587 6 121264119 to 121264137 18 + TSS region transcription start site region 58587
Tssr58588 6 121270470 to 121270487 17 + TSS region transcription start site region 58588
Tssr58589 6 121270538 to 121270550 12 + TSS region transcription start site region 58589
Tssr62811 6 121272700 to 121272727 27 - TSS region transcription start site region 62811
Tssr58590 6 121300280 to 121300297 17 + TSS region transcription start site region 58590
Slc6a13 6 121300296 to 121337721 37425 + protein coding gene solute carrier family 6 (neurotransmitter transporter, GABA), member 13
Tssr58591 6 121300732 to 121300755 23 + TSS region transcription start site region 58591