Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:120396300-120936354

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq2 6 106005405 to 120917141 14911736 QTL inflammatory bowel disease QTL 2
Kdm5a 6 120364124 to 120444574 80450 + protein coding gene lysine (K)-specific demethylase 5A
D730048M19Rik 6 120396857 to 120397988 1131 unclassified gene RIKEN cDNA D730048M19 gene
Tssr58528 6 120405220 to 120405224 4 + TSS region transcription start site region 58528
Tssr58529 6 120419387 to 120419436 49 + TSS region transcription start site region 58529
Tssr58530 6 120434990 to 120435001 11 + TSS region transcription start site region 58530
Tssr58531 6 120439879 to 120439912 33 + TSS region transcription start site region 58531
Tssr58532 6 120441081 to 120441092 11 + TSS region transcription start site region 58532
Cpgi17921 6 120454255 to 120454709 454 CpG island CpG island 17921
Cpgi17922 6 120462900 to 120464174 1274 CpG island CpG island 17922
Il17ra 6 120463181 to 120483731 20550 + protein coding gene interleukin 17 receptor A
Tssr58533 6 120463200 to 120463253 53 + TSS region transcription start site region 58533
Tssr58534 6 120463320 to 120463335 15 + TSS region transcription start site region 58534
Tssr1989 6 120465233 to 120465259 26 + TSS region transcription start site region 1989
Tssr58535 6 120465719 to 120465751 32 + TSS region transcription start site region 58535
Tssr58536 6 120465872 to 120465882 10 + TSS region transcription start site region 58536
Tssr58537 6 120465889 to 120465944 55 + TSS region transcription start site region 58537
Tssr1990 6 120466695 to 120466705 10 + TSS region transcription start site region 1990
Tssr1991 6 120471930 to 120471971 41 + TSS region transcription start site region 1991
Tssr58538 6 120472951 to 120472977 26 + TSS region transcription start site region 58538
Tssr1992 6 120473507 to 120473520 13 - TSS region transcription start site region 1992
Tssr58539 6 120473771 to 120473790 19 + TSS region transcription start site region 58539
Tmem121b 6 120488939 to 120493807 4868 - protein coding gene transmembrane protein 121B
Tssr58540 6 120489078 to 120489113 35 + TSS region transcription start site region 58540
Cpgi17923 6 120492169 to 120494333 2164 CpG island CpG island 17923
Tssr62778 6 120493902 to 120493913 11 - TSS region transcription start site region 62778
Tssr62779 6 120493924 to 120493935 11 - TSS region transcription start site region 62779
Tssr62780 6 120493936 to 120494017 81 - TSS region transcription start site region 62780
Gm38888 6 120500342 to 120503539 3197 + lncRNA gene predicted gene, 38888
Hdhd5 6 120509494 to 120531319 21825 - protein coding gene haloacid dehalogenase like hydrolase domain containing 5
Gm20692 6 120512449 to 120513232 783 + antisense lncRNA gene predicted gene 20692
Gm24391 6 120524897 to 120524998 101 + snRNA gene predicted gene, 24391
Cpgi17924 6 120530851 to 120531734 883 CpG island CpG island 17924
Tssr62781 6 120531289 to 120531328 39 - TSS region transcription start site region 62781
Tssr58541 6 120554784 to 120554793 9 + TSS region transcription start site region 58541
1700072O05Rik 6 120554796 to 120562879 8083 + lincRNA gene RIKEN cDNA 1700072O05 gene
Gm44074 6 120577371 to 120577707 336 - pseudogene predicted gene, 44074
Cpgi17925 6 120579565 to 120579744 179 CpG island CpG island 17925
Gm44124 6 120579705 to 120580176 471 - unclassified gene predicted gene, 44124
Tssr58542 6 120605717 to 120605727 10 + TSS region transcription start site region 58542
Tssr58543 6 120644403 to 120644419 16 + TSS region transcription start site region 58543
Cpgi17926 6 120665359 to 120667510 2151 CpG island CpG island 17926
Tssr58544 6 120666300 to 120666354 54 + TSS region transcription start site region 58544
Cecr2 6 120666369 to 120771190 104821 + protein coding gene CECR2, histone acetyl-lysine reader
Tssr58545 6 120666388 to 120666424 36 + TSS region transcription start site region 58545
D6Mit369 6 120668275 to 120668396 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 369
Tssr58546 6 120742754 to 120742755 1 + TSS region transcription start site region 58546
Slc25a18 6 120773511 to 120794169 20658 + protein coding gene solute carrier family 25 (mitochondrial carrier), member 18
Tssr58547 6 120773549 to 120773579 30 + TSS region transcription start site region 58547
Tssr58548 6 120773584 to 120773586 2 + TSS region transcription start site region 58548
Tssr58549 6 120773592 to 120773597 5 + TSS region transcription start site region 58549
Tssr58550 6 120773611 to 120773624 13 + TSS region transcription start site region 58550
Tssr58551 6 120773633 to 120773636 3 + TSS region transcription start site region 58551
Tssr58552 6 120776511 to 120776533 22 + TSS region transcription start site region 58552
Tssr58553 6 120794063 to 120794069 6 + TSS region transcription start site region 58553
Atp6v1e1 6 120795244 to 120822685 27441 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit E1
Gm25193 6 120797574 to 120797670 96 - miRNA gene predicted gene, 25193
Tssr58554 6 120817767 to 120817769 2 + TSS region transcription start site region 58554
Gm19245 6 120817768 to 120818097 329 + pseudogene predicted gene, 19245
Cpgi17927 6 120822264 to 120822855 591 CpG island CpG island 17927
Tssr62782 6 120822664 to 120822675 11 - TSS region transcription start site region 62782
Tssr62783 6 120822680 to 120822707 27 - TSS region transcription start site region 62783
Tssr62784 6 120822713 to 120822756 43 - TSS region transcription start site region 62784
Gm38889 6 120823013 to 120836166 13153 - lncRNA gene predicted gene, 38889
2610024L02Rik 6 120835396 to 120836073 677 unclassified gene RIKEN cDNA 2610024L02 gene
Cpgi17928 6 120835831 to 120836844 1013 CpG island CpG island 17928
Tssr58555 6 120836201 to 120836257 56 + TSS region transcription start site region 58555
Bcl2l13 6 120836217 to 120892842 56625 + protein coding gene BCL2-like 13 (apoptosis facilitator)
Tssr58556 6 120836268 to 120836283 15 + TSS region transcription start site region 58556
Tssr58557 6 120870037 to 120870041 4 + TSS region transcription start site region 58557
Bid 6 120893119 to 120917141 24022 - protein coding gene BH3 interacting domain death agonist
Gm17812 6 120908673 to 120908990 317 + pseudogene predicted gene, 17812
Gm44260 6 120912900 to 120914993 2093 - unclassified gene predicted gene, 44260
Cpgi17929 6 120915911 to 120916974 1063 CpG island CpG island 17929
Tssr62785 6 120916764 to 120916780 16 - TSS region transcription start site region 62785
Tssr62786 6 120916782 to 120916807 25 - TSS region transcription start site region 62786
Tssr62787 6 120916813 to 120916867 54 - TSS region transcription start site region 62787
Tssr58558 6 120927165 to 120927183 18 + TSS region transcription start site region 58558
Mical3 6 120931707 to 121130999 199292 - protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing 3
Tssr58559 6 120932854 to 120932865 11 + TSS region transcription start site region 58559
Tssr58560 6 120932873 to 120932890 17 + TSS region transcription start site region 58560
Tssr62788 6 120933805 to 120933809 4 - TSS region transcription start site region 62788