Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:120389784-120719793

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kdm5a 6 120364124 to 120444574 80450 + protein coding gene lysine (K)-specific demethylase 5A
Tssr58527 6 120394631 to 120394635 4 + TSS region transcription start site region 58527
D730048M19Rik 6 120396857 to 120397988 1131 unclassified gene RIKEN cDNA D730048M19 gene
Tssr58528 6 120405220 to 120405224 4 + TSS region transcription start site region 58528
Tssr58529 6 120419387 to 120419436 49 + TSS region transcription start site region 58529
Tssr58530 6 120434990 to 120435001 11 + TSS region transcription start site region 58530
Tssr58531 6 120439879 to 120439912 33 + TSS region transcription start site region 58531
Tssr58532 6 120441081 to 120441092 11 + TSS region transcription start site region 58532
Cpgi17921 6 120454255 to 120454709 454 CpG island CpG island 17921
Cpgi17922 6 120462900 to 120464174 1274 CpG island CpG island 17922
Il17ra 6 120463181 to 120483731 20550 + protein coding gene interleukin 17 receptor A
Tssr58533 6 120463200 to 120463253 53 + TSS region transcription start site region 58533
Tssr58534 6 120463320 to 120463335 15 + TSS region transcription start site region 58534
Tssr1989 6 120465233 to 120465259 26 + TSS region transcription start site region 1989
Tssr58535 6 120465719 to 120465751 32 + TSS region transcription start site region 58535
Tssr58536 6 120465872 to 120465882 10 + TSS region transcription start site region 58536
Tssr58537 6 120465889 to 120465944 55 + TSS region transcription start site region 58537
Tssr1990 6 120466695 to 120466705 10 + TSS region transcription start site region 1990
Tssr1991 6 120471930 to 120471971 41 + TSS region transcription start site region 1991
Tssr58538 6 120472951 to 120472977 26 + TSS region transcription start site region 58538
Tssr1992 6 120473507 to 120473520 13 - TSS region transcription start site region 1992
Tssr58539 6 120473771 to 120473790 19 + TSS region transcription start site region 58539
Tmem121b 6 120488939 to 120493807 4868 - protein coding gene transmembrane protein 121B
Tssr58540 6 120489078 to 120489113 35 + TSS region transcription start site region 58540
Cpgi17923 6 120492169 to 120494333 2164 CpG island CpG island 17923
Tssr62778 6 120493902 to 120493913 11 - TSS region transcription start site region 62778
Tssr62779 6 120493924 to 120493935 11 - TSS region transcription start site region 62779
Tssr62780 6 120493936 to 120494017 81 - TSS region transcription start site region 62780
Gm38888 6 120500342 to 120503539 3197 + lncRNA gene predicted gene, 38888
Hdhd5 6 120509494 to 120531319 21825 - protein coding gene haloacid dehalogenase like hydrolase domain containing 5
Gm20692 6 120512449 to 120513232 783 + antisense lncRNA gene predicted gene 20692
Gm24391 6 120524897 to 120524998 101 + snRNA gene predicted gene, 24391
Cpgi17924 6 120530851 to 120531734 883 CpG island CpG island 17924
Tssr62781 6 120531289 to 120531328 39 - TSS region transcription start site region 62781
Tssr58541 6 120554784 to 120554793 9 + TSS region transcription start site region 58541
1700072O05Rik 6 120554796 to 120562879 8083 + lincRNA gene RIKEN cDNA 1700072O05 gene
Gm44074 6 120577371 to 120577707 336 - pseudogene predicted gene, 44074
Cpgi17925 6 120579565 to 120579744 179 CpG island CpG island 17925
Gm44124 6 120579705 to 120580176 471 - unclassified gene predicted gene, 44124
Tssr58542 6 120605717 to 120605727 10 + TSS region transcription start site region 58542
Tssr58543 6 120644403 to 120644419 16 + TSS region transcription start site region 58543
Cpgi17926 6 120665359 to 120667510 2151 CpG island CpG island 17926
Tssr58544 6 120666300 to 120666354 54 + TSS region transcription start site region 58544
Cecr2 6 120666369 to 120771190 104821 + protein coding gene CECR2, histone acetyl-lysine reader
Tssr58545 6 120666388 to 120666424 36 + TSS region transcription start site region 58545
D6Mit369 6 120668275 to 120668396 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 369