Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:120260359-121072510

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq2 6 106005405 to 120917141 14911736 QTL inflammatory bowel disease QTL 2
B4galnt3 6 120203073 to 120294559 91486 - protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 3
Tssr62769 6 120286679 to 120286684 5 - TSS region transcription start site region 62769
Cpgi17918 6 120293812 to 120295181 1369 CpG island CpG island 17918
Tssr62770 6 120294281 to 120294316 35 - TSS region transcription start site region 62770
D330020A13Rik 6 120294364 to 120295432 1068 + protein coding gene RIKEN cDNA D330020A13 gene
Tssr1987 6 120294694 to 120294717 23 - TSS region transcription start site region 1987
Tssr62771 6 120294888 to 120294904 16 - TSS region transcription start site region 62771
Tssr62772 6 120294921 to 120294935 14 - TSS region transcription start site region 62772
Tssr1988 6 120302723 to 120302727 4 - TSS region transcription start site region 1988
Ccdc77 6 120324322 to 120364369 40047 - protein coding gene coiled-coil domain containing 77
D6Mit375 6 120339759 to 120339971 212 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-375
Cpgi17919 6 120357326 to 120357495 169 CpG island CpG island 17919
Tssr62773 6 120357342 to 120357400 58 - TSS region transcription start site region 62773
Tssr62774 6 120357422 to 120357435 13 - TSS region transcription start site region 62774
Tssr62775 6 120357440 to 120357489 49 - TSS region transcription start site region 62775
Cpgi17920 6 120363673 to 120365209 1536 CpG island CpG island 17920
Tssr58523 6 120364094 to 120364163 69 + TSS region transcription start site region 58523
Kdm5a 6 120364124 to 120444574 80450 + protein coding gene lysine (K)-specific demethylase 5A
Tssr62776 6 120364317 to 120364328 11 - TSS region transcription start site region 62776
Tssr62777 6 120364344 to 120364374 30 - TSS region transcription start site region 62777
Tssr58524 6 120364393 to 120364448 55 + TSS region transcription start site region 58524
Tssr58525 6 120364462 to 120364469 7 + TSS region transcription start site region 58525
D230014I24Rik 6 120378806 to 120380483 1677 unclassified gene RIKEN cDNA D230014I24 gene
Gm24592 6 120381034 to 120381139 105 - snRNA gene predicted gene, 24592
Tssr58526 6 120382038 to 120382043 5 + TSS region transcription start site region 58526
Tssr58527 6 120394631 to 120394635 4 + TSS region transcription start site region 58527
D730048M19Rik 6 120396857 to 120397988 1131 unclassified gene RIKEN cDNA D730048M19 gene
Tssr58528 6 120405220 to 120405224 4 + TSS region transcription start site region 58528
Tssr58529 6 120419387 to 120419436 49 + TSS region transcription start site region 58529
Tssr58530 6 120434990 to 120435001 11 + TSS region transcription start site region 58530
Tssr58531 6 120439879 to 120439912 33 + TSS region transcription start site region 58531
Tssr58532 6 120441081 to 120441092 11 + TSS region transcription start site region 58532
Cpgi17921 6 120454255 to 120454709 454 CpG island CpG island 17921
Cpgi17922 6 120462900 to 120464174 1274 CpG island CpG island 17922
Il17ra 6 120463181 to 120483731 20550 + protein coding gene interleukin 17 receptor A
Tssr58533 6 120463200 to 120463253 53 + TSS region transcription start site region 58533
Tssr58534 6 120463320 to 120463335 15 + TSS region transcription start site region 58534
Tssr1989 6 120465233 to 120465259 26 + TSS region transcription start site region 1989
Tssr58535 6 120465719 to 120465751 32 + TSS region transcription start site region 58535
Tssr58536 6 120465872 to 120465882 10 + TSS region transcription start site region 58536
Tssr58537 6 120465889 to 120465944 55 + TSS region transcription start site region 58537
Tssr1990 6 120466695 to 120466705 10 + TSS region transcription start site region 1990
Tssr1991 6 120471930 to 120471971 41 + TSS region transcription start site region 1991
Tssr58538 6 120472951 to 120472977 26 + TSS region transcription start site region 58538
Tssr1992 6 120473507 to 120473520 13 - TSS region transcription start site region 1992
Tssr58539 6 120473771 to 120473790 19 + TSS region transcription start site region 58539
Tmem121b 6 120488939 to 120493807 4868 - protein coding gene transmembrane protein 121B
Tssr58540 6 120489078 to 120489113 35 + TSS region transcription start site region 58540
Cpgi17923 6 120492169 to 120494333 2164 CpG island CpG island 17923
Tssr62778 6 120493902 to 120493913 11 - TSS region transcription start site region 62778
Tssr62779 6 120493924 to 120493935 11 - TSS region transcription start site region 62779
Tssr62780 6 120493936 to 120494017 81 - TSS region transcription start site region 62780
Gm38888 6 120500342 to 120503539 3197 + lncRNA gene predicted gene, 38888
Hdhd5 6 120509494 to 120531319 21825 - protein coding gene haloacid dehalogenase like hydrolase domain containing 5
Gm20692 6 120512449 to 120513232 783 + antisense lncRNA gene predicted gene 20692
Gm24391 6 120524897 to 120524998 101 + snRNA gene predicted gene, 24391
Cpgi17924 6 120530851 to 120531734 883 CpG island CpG island 17924
Tssr62781 6 120531289 to 120531328 39 - TSS region transcription start site region 62781
Tssr58541 6 120554784 to 120554793 9 + TSS region transcription start site region 58541
1700072O05Rik 6 120554796 to 120562879 8083 + lincRNA gene RIKEN cDNA 1700072O05 gene
Gm44074 6 120577371 to 120577707 336 - pseudogene predicted gene, 44074
Cpgi17925 6 120579565 to 120579744 179 CpG island CpG island 17925
Gm44124 6 120579705 to 120580176 471 - unclassified gene predicted gene, 44124
Tssr58542 6 120605717 to 120605727 10 + TSS region transcription start site region 58542
Tssr58543 6 120644403 to 120644419 16 + TSS region transcription start site region 58543
Cpgi17926 6 120665359 to 120667510 2151 CpG island CpG island 17926
Tssr58544 6 120666300 to 120666354 54 + TSS region transcription start site region 58544
Cecr2 6 120666369 to 120771190 104821 + protein coding gene CECR2, histone acetyl-lysine reader
Tssr58545 6 120666388 to 120666424 36 + TSS region transcription start site region 58545
D6Mit369 6 120668275 to 120668396 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 369
Tssr58546 6 120742754 to 120742755 1 + TSS region transcription start site region 58546
Slc25a18 6 120773511 to 120794169 20658 + protein coding gene solute carrier family 25 (mitochondrial carrier), member 18
Tssr58547 6 120773549 to 120773579 30 + TSS region transcription start site region 58547
Tssr58548 6 120773584 to 120773586 2 + TSS region transcription start site region 58548
Tssr58549 6 120773592 to 120773597 5 + TSS region transcription start site region 58549
Tssr58550 6 120773611 to 120773624 13 + TSS region transcription start site region 58550
Tssr58551 6 120773633 to 120773636 3 + TSS region transcription start site region 58551
Tssr58552 6 120776511 to 120776533 22 + TSS region transcription start site region 58552
Tssr58553 6 120794063 to 120794069 6 + TSS region transcription start site region 58553
Atp6v1e1 6 120795244 to 120822685 27441 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit E1
Gm25193 6 120797574 to 120797670 96 - miRNA gene predicted gene, 25193
Tssr58554 6 120817767 to 120817769 2 + TSS region transcription start site region 58554
Gm19245 6 120817768 to 120818097 329 + pseudogene predicted gene, 19245
Cpgi17927 6 120822264 to 120822855 591 CpG island CpG island 17927
Tssr62782 6 120822664 to 120822675 11 - TSS region transcription start site region 62782
Tssr62783 6 120822680 to 120822707 27 - TSS region transcription start site region 62783
Tssr62784 6 120822713 to 120822756 43 - TSS region transcription start site region 62784
Gm38889 6 120823013 to 120836166 13153 - lncRNA gene predicted gene, 38889
2610024L02Rik 6 120835396 to 120836073 677 unclassified gene RIKEN cDNA 2610024L02 gene
Cpgi17928 6 120835831 to 120836844 1013 CpG island CpG island 17928
Tssr58555 6 120836201 to 120836257 56 + TSS region transcription start site region 58555
Bcl2l13 6 120836217 to 120892842 56625 + protein coding gene BCL2-like 13 (apoptosis facilitator)
Tssr58556 6 120836268 to 120836283 15 + TSS region transcription start site region 58556
Tssr58557 6 120870037 to 120870041 4 + TSS region transcription start site region 58557
Bid 6 120893119 to 120917141 24022 - protein coding gene BH3 interacting domain death agonist
Gm17812 6 120908673 to 120908990 317 + pseudogene predicted gene, 17812
Gm44260 6 120912900 to 120914993 2093 - unclassified gene predicted gene, 44260
Cpgi17929 6 120915911 to 120916974 1063 CpG island CpG island 17929
Tssr62785 6 120916764 to 120916780 16 - TSS region transcription start site region 62785
Tssr62786 6 120916782 to 120916807 25 - TSS region transcription start site region 62786
Tssr62787 6 120916813 to 120916867 54 - TSS region transcription start site region 62787
Tssr58558 6 120927165 to 120927183 18 + TSS region transcription start site region 58558
Mical3 6 120931707 to 121130999 199292 - protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing 3
Tssr58559 6 120932854 to 120932865 11 + TSS region transcription start site region 58559
Tssr58560 6 120932873 to 120932890 17 + TSS region transcription start site region 58560
Tssr62788 6 120933805 to 120933809 4 - TSS region transcription start site region 62788
Gm43916 6 120951901 to 120952867 966 + antisense lncRNA gene predicted gene, 43916
Cpgi17930 6 120958295 to 120959045 750 CpG island CpG island 17930
Gm43915 6 120958844 to 120997498 38654 + antisense lncRNA gene predicted gene, 43915
Tssr62789 6 120971398 to 120971437 39 - TSS region transcription start site region 62789
Tssr62790 6 120971609 to 120971638 29 - TSS region transcription start site region 62790
Tssr62791 6 121003005 to 121003012 7 - TSS region transcription start site region 62791
Tssr62792 6 121003034 to 121003052 18 - TSS region transcription start site region 62792
Tssr62793 6 121003066 to 121003076 10 - TSS region transcription start site region 62793
Tssr62794 6 121003099 to 121003134 35 - TSS region transcription start site region 62794
Gm9878 6 121026507 to 121030990 4483 + unclassified gene predicted gene 9878
Tssr62795 6 121027435 to 121027442 7 - TSS region transcription start site region 62795
Tssr62796 6 121027446 to 121027459 13 - TSS region transcription start site region 62796
Tssr58561 6 121027500 to 121027536 36 + TSS region transcription start site region 58561
Tssr62797 6 121031640 to 121031643 3 - TSS region transcription start site region 62797
Tssr62798 6 121044124 to 121044128 4 - TSS region transcription start site region 62798
Gm4651 6 121064464 to 121069954 5490 + unclassified non-coding RNA gene predicted gene 4651