Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:120109393-120619448

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ninj2 6 120093350 to 120200339 106989 + protein coding gene ninjurin 2
Tssr58521 6 120112695 to 120112748 53 + TSS region transcription start site region 58521
Tssr62761 6 120114755 to 120114802 47 - TSS region transcription start site region 62761
Gm25327 6 120143644 to 120143750 106 - snRNA gene predicted gene, 25327
Tssr62762 6 120187650 to 120187670 20 - TSS region transcription start site region 62762
Tssr62763 6 120187680 to 120187691 11 - TSS region transcription start site region 62763
Tssr62764 6 120188438 to 120188463 25 - TSS region transcription start site region 62764
Tssr62765 6 120188467 to 120188483 16 - TSS region transcription start site region 62765
Tssr58522 6 120189099 to 120189124 25 + TSS region transcription start site region 58522
B4galnt3 6 120203073 to 120294559 91486 - protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 3
Tssr62766 6 120227163 to 120227200 37 - TSS region transcription start site region 62766
Tssr62767 6 120242696 to 120242730 34 - TSS region transcription start site region 62767
Tssr62768 6 120257446 to 120257493 47 - TSS region transcription start site region 62768
Tssr62769 6 120286679 to 120286684 5 - TSS region transcription start site region 62769
Cpgi17918 6 120293812 to 120295181 1369 CpG island CpG island 17918
Tssr62770 6 120294281 to 120294316 35 - TSS region transcription start site region 62770
D330020A13Rik 6 120294364 to 120295432 1068 + protein coding gene RIKEN cDNA D330020A13 gene
Tssr1987 6 120294694 to 120294717 23 - TSS region transcription start site region 1987
Tssr62771 6 120294888 to 120294904 16 - TSS region transcription start site region 62771
Tssr62772 6 120294921 to 120294935 14 - TSS region transcription start site region 62772
Tssr1988 6 120302723 to 120302727 4 - TSS region transcription start site region 1988
Ccdc77 6 120324322 to 120364369 40047 - protein coding gene coiled-coil domain containing 77
D6Mit375 6 120339759 to 120339971 212 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-375
Cpgi17919 6 120357326 to 120357495 169 CpG island CpG island 17919
Tssr62773 6 120357342 to 120357400 58 - TSS region transcription start site region 62773
Tssr62774 6 120357422 to 120357435 13 - TSS region transcription start site region 62774
Tssr62775 6 120357440 to 120357489 49 - TSS region transcription start site region 62775
Cpgi17920 6 120363673 to 120365209 1536 CpG island CpG island 17920
Tssr58523 6 120364094 to 120364163 69 + TSS region transcription start site region 58523
Kdm5a 6 120364124 to 120444574 80450 + protein coding gene lysine (K)-specific demethylase 5A
Tssr62776 6 120364317 to 120364328 11 - TSS region transcription start site region 62776
Tssr62777 6 120364344 to 120364374 30 - TSS region transcription start site region 62777
Tssr58524 6 120364393 to 120364448 55 + TSS region transcription start site region 58524
Tssr58525 6 120364462 to 120364469 7 + TSS region transcription start site region 58525
D230014I24Rik 6 120378806 to 120380483 1677 unclassified gene RIKEN cDNA D230014I24 gene
Gm24592 6 120381034 to 120381139 105 - snRNA gene predicted gene, 24592
Tssr58526 6 120382038 to 120382043 5 + TSS region transcription start site region 58526
Tssr58527 6 120394631 to 120394635 4 + TSS region transcription start site region 58527
D730048M19Rik 6 120396857 to 120397988 1131 unclassified gene RIKEN cDNA D730048M19 gene
Tssr58528 6 120405220 to 120405224 4 + TSS region transcription start site region 58528
Tssr58529 6 120419387 to 120419436 49 + TSS region transcription start site region 58529
Tssr58530 6 120434990 to 120435001 11 + TSS region transcription start site region 58530
Tssr58531 6 120439879 to 120439912 33 + TSS region transcription start site region 58531
Tssr58532 6 120441081 to 120441092 11 + TSS region transcription start site region 58532
Cpgi17921 6 120454255 to 120454709 454 CpG island CpG island 17921
Cpgi17922 6 120462900 to 120464174 1274 CpG island CpG island 17922
Il17ra 6 120463181 to 120483731 20550 + protein coding gene interleukin 17 receptor A
Tssr58533 6 120463200 to 120463253 53 + TSS region transcription start site region 58533
Tssr58534 6 120463320 to 120463335 15 + TSS region transcription start site region 58534
Tssr1989 6 120465233 to 120465259 26 + TSS region transcription start site region 1989
Tssr58535 6 120465719 to 120465751 32 + TSS region transcription start site region 58535
Tssr58536 6 120465872 to 120465882 10 + TSS region transcription start site region 58536
Tssr58537 6 120465889 to 120465944 55 + TSS region transcription start site region 58537
Tssr1990 6 120466695 to 120466705 10 + TSS region transcription start site region 1990
Tssr1991 6 120471930 to 120471971 41 + TSS region transcription start site region 1991
Tssr58538 6 120472951 to 120472977 26 + TSS region transcription start site region 58538
Tssr1992 6 120473507 to 120473520 13 - TSS region transcription start site region 1992
Tssr58539 6 120473771 to 120473790 19 + TSS region transcription start site region 58539
Tmem121b 6 120488939 to 120493807 4868 - protein coding gene transmembrane protein 121B
Tssr58540 6 120489078 to 120489113 35 + TSS region transcription start site region 58540
Cpgi17923 6 120492169 to 120494333 2164 CpG island CpG island 17923
Tssr62778 6 120493902 to 120493913 11 - TSS region transcription start site region 62778
Tssr62779 6 120493924 to 120493935 11 - TSS region transcription start site region 62779
Tssr62780 6 120493936 to 120494017 81 - TSS region transcription start site region 62780
Gm38888 6 120500342 to 120503539 3197 + lncRNA gene predicted gene, 38888
Hdhd5 6 120509494 to 120531319 21825 - protein coding gene haloacid dehalogenase like hydrolase domain containing 5
Gm20692 6 120512449 to 120513232 783 + antisense lncRNA gene predicted gene 20692
Gm24391 6 120524897 to 120524998 101 + snRNA gene predicted gene, 24391
Cpgi17924 6 120530851 to 120531734 883 CpG island CpG island 17924
Tssr62781 6 120531289 to 120531328 39 - TSS region transcription start site region 62781
Tssr58541 6 120554784 to 120554793 9 + TSS region transcription start site region 58541
1700072O05Rik 6 120554796 to 120562879 8083 + lincRNA gene RIKEN cDNA 1700072O05 gene
Gm44074 6 120577371 to 120577707 336 - pseudogene predicted gene, 44074
Cpgi17925 6 120579565 to 120579744 179 CpG island CpG island 17925
Gm44124 6 120579705 to 120580176 471 - unclassified gene predicted gene, 44124
Tssr58542 6 120605717 to 120605727 10 + TSS region transcription start site region 58542