Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:119773438-120603463

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Erc1 6 119570796 to 119848167 277371 - protein coding gene ELKS/RAB6-interacting/CAST family member 1
Tssr62728 6 119818314 to 119818344 30 - TSS region transcription start site region 62728
Cpgi17913 6 119847363 to 119848866 1503 CpG island CpG island 17913
Tssr62729 6 119848069 to 119848078 9 - TSS region transcription start site region 62729
Tssr62730 6 119848093 to 119848113 20 - TSS region transcription start site region 62730
Tssr62731 6 119848120 to 119848168 48 - TSS region transcription start site region 62731
3110021A11Rik 6 119848193 to 119849029 836 + lncRNA gene RIKEN cDNA 3110021A11 gene
Gm15532 6 119892920 to 119893800 880 + pseudogene predicted gene 15532
4930540M05Rik 6 119896159 to 119902653 6494 - lincRNA gene RIKEN cDNA 4930540M05 gene
Cpgi17914 6 119902371 to 119903190 819 CpG island CpG island 17914
Tssr1986 6 119902450 to 119902463 13 + TSS region transcription start site region 1986
Tssr58513 6 119902688 to 119902734 46 + TSS region transcription start site region 58513
Rad52 6 119902698 to 119922828 20130 + protein coding gene RAD52 homolog, DNA repair protein
Tssr58514 6 119902741 to 119902754 13 + TSS region transcription start site region 58514
Tssr58515 6 119904255 to 119904260 5 + TSS region transcription start site region 58515
Cpgi17915 6 119918963 to 119919134 171 CpG island CpG island 17915
Tssr62732 6 119921611 to 119921615 4 - TSS region transcription start site region 62732
Tssr58516 6 119922191 to 119922202 11 + TSS region transcription start site region 58516
Tssr58517 6 119922208 to 119922216 8 + TSS region transcription start site region 58517
Wnk1 6 119923969 to 120038672 114703 - protein coding gene WNK lysine deficient protein kinase 1
Tssr62733 6 119925853 to 119925875 22 - TSS region transcription start site region 62733
Tssr62734 6 119926295 to 119926300 5 - TSS region transcription start site region 62734
Tssr62735 6 119933697 to 119933699 2 - TSS region transcription start site region 62735
Tssr62736 6 119948491 to 119948547 56 - TSS region transcription start site region 62736
Tssr62737 6 119948686 to 119948704 18 - TSS region transcription start site region 62737
Tssr62738 6 119961256 to 119961261 5 - TSS region transcription start site region 62738
Tssr62739 6 119963834 to 119963836 2 - TSS region transcription start site region 62739
Tssr62740 6 119966039 to 119966042 3 - TSS region transcription start site region 62740
Tssr62741 6 119969279 to 119969323 44 - TSS region transcription start site region 62741
Tssr62742 6 119969519 to 119969534 15 - TSS region transcription start site region 62742
Tssr62743 6 119971013 to 119971036 23 - TSS region transcription start site region 62743
Tssr62744 6 119981459 to 119981478 19 - TSS region transcription start site region 62744
Tssr62745 6 119992481 to 119992496 15 - TSS region transcription start site region 62745
Tssr62746 6 119992500 to 119992511 11 - TSS region transcription start site region 62746
Tssr62747 6 120002239 to 120002251 12 - TSS region transcription start site region 62747
Tssr62748 6 120002311 to 120002324 13 - TSS region transcription start site region 62748
Gm16199 6 120005998 to 120006285 287 + pseudogene predicted gene 16199
Aips5 6 120007151 to 120007151 0 QTL autoimmune pancreatitis severity 5
4833412E19Rik 6 120009357 to 120011168 1811 unclassified gene RIKEN cDNA 4833412E19 gene
Tssr62749 6 120022790 to 120022793 3 - TSS region transcription start site region 62749
Mir706 6 120034228 to 120034311 83 - miRNA gene microRNA 706
Cpgi17916 6 120036880 to 120038981 2101 CpG island CpG island 17916
Tssr62750 6 120037334 to 120037353 19 - TSS region transcription start site region 62750
Tssr62751 6 120037860 to 120037880 20 - TSS region transcription start site region 62751
Tssr62752 6 120037887 to 120037914 27 - TSS region transcription start site region 62752
Tssr62753 6 120037965 to 120037976 11 - TSS region transcription start site region 62753
Tssr62754 6 120038023 to 120038050 27 - TSS region transcription start site region 62754
Tssr62755 6 120038060 to 120038139 79 - TSS region transcription start site region 62755
Tssr62756 6 120038305 to 120038363 58 - TSS region transcription start site region 62756
Tssr62757 6 120038546 to 120038555 9 - TSS region transcription start site region 62757
Tssr62758 6 120038621 to 120038636 15 - TSS region transcription start site region 62758
Tssr62759 6 120038647 to 120038699 52 - TSS region transcription start site region 62759
Cpgi17917 6 120039762 to 120040033 271 CpG island CpG island 17917
Tssr58518 6 120039901 to 120039926 25 + TSS region transcription start site region 58518
Tssr62760 6 120083559 to 120083582 23 - TSS region transcription start site region 62760
Tssr58519 6 120093348 to 120093359 11 + TSS region transcription start site region 58519
Ninj2 6 120093350 to 120200339 106989 + protein coding gene ninjurin 2
Tssr58520 6 120093370 to 120093381 11 + TSS region transcription start site region 58520
D6Dcr24 6 120104650 to 120104752 102 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 24
Tssr58521 6 120112695 to 120112748 53 + TSS region transcription start site region 58521
Tssr62761 6 120114755 to 120114802 47 - TSS region transcription start site region 62761
Gm25327 6 120143644 to 120143750 106 - snRNA gene predicted gene, 25327
Tssr62762 6 120187650 to 120187670 20 - TSS region transcription start site region 62762
Tssr62763 6 120187680 to 120187691 11 - TSS region transcription start site region 62763
Tssr62764 6 120188438 to 120188463 25 - TSS region transcription start site region 62764
Tssr62765 6 120188467 to 120188483 16 - TSS region transcription start site region 62765
Tssr58522 6 120189099 to 120189124 25 + TSS region transcription start site region 58522
B4galnt3 6 120203073 to 120294559 91486 - protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 3
Tssr62766 6 120227163 to 120227200 37 - TSS region transcription start site region 62766
Tssr62767 6 120242696 to 120242730 34 - TSS region transcription start site region 62767
Tssr62768 6 120257446 to 120257493 47 - TSS region transcription start site region 62768
Tssr62769 6 120286679 to 120286684 5 - TSS region transcription start site region 62769
Cpgi17918 6 120293812 to 120295181 1369 CpG island CpG island 17918
Tssr62770 6 120294281 to 120294316 35 - TSS region transcription start site region 62770
D330020A13Rik 6 120294364 to 120295432 1068 + protein coding gene RIKEN cDNA D330020A13 gene
Tssr1987 6 120294694 to 120294717 23 - TSS region transcription start site region 1987
Tssr62771 6 120294888 to 120294904 16 - TSS region transcription start site region 62771
Tssr62772 6 120294921 to 120294935 14 - TSS region transcription start site region 62772
Tssr1988 6 120302723 to 120302727 4 - TSS region transcription start site region 1988
Ccdc77 6 120324322 to 120364369 40047 - protein coding gene coiled-coil domain containing 77
D6Mit375 6 120339759 to 120339971 212 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-375
Cpgi17919 6 120357326 to 120357495 169 CpG island CpG island 17919
Tssr62773 6 120357342 to 120357400 58 - TSS region transcription start site region 62773
Tssr62774 6 120357422 to 120357435 13 - TSS region transcription start site region 62774
Tssr62775 6 120357440 to 120357489 49 - TSS region transcription start site region 62775
Cpgi17920 6 120363673 to 120365209 1536 CpG island CpG island 17920
Tssr58523 6 120364094 to 120364163 69 + TSS region transcription start site region 58523
Kdm5a 6 120364124 to 120444574 80450 + protein coding gene lysine (K)-specific demethylase 5A
Tssr62776 6 120364317 to 120364328 11 - TSS region transcription start site region 62776
Tssr62777 6 120364344 to 120364374 30 - TSS region transcription start site region 62777
Tssr58524 6 120364393 to 120364448 55 + TSS region transcription start site region 58524
Tssr58525 6 120364462 to 120364469 7 + TSS region transcription start site region 58525
D230014I24Rik 6 120378806 to 120380483 1677 unclassified gene RIKEN cDNA D230014I24 gene
Gm24592 6 120381034 to 120381139 105 - snRNA gene predicted gene, 24592
Tssr58526 6 120382038 to 120382043 5 + TSS region transcription start site region 58526
Tssr58527 6 120394631 to 120394635 4 + TSS region transcription start site region 58527
D730048M19Rik 6 120396857 to 120397988 1131 unclassified gene RIKEN cDNA D730048M19 gene
Tssr58528 6 120405220 to 120405224 4 + TSS region transcription start site region 58528
Tssr58529 6 120419387 to 120419436 49 + TSS region transcription start site region 58529
Tssr58530 6 120434990 to 120435001 11 + TSS region transcription start site region 58530
Tssr58531 6 120439879 to 120439912 33 + TSS region transcription start site region 58531
Tssr58532 6 120441081 to 120441092 11 + TSS region transcription start site region 58532
Cpgi17921 6 120454255 to 120454709 454 CpG island CpG island 17921
Cpgi17922 6 120462900 to 120464174 1274 CpG island CpG island 17922
Il17ra 6 120463181 to 120483731 20550 + protein coding gene interleukin 17 receptor A
Tssr58533 6 120463200 to 120463253 53 + TSS region transcription start site region 58533
Tssr58534 6 120463320 to 120463335 15 + TSS region transcription start site region 58534
Tssr1989 6 120465233 to 120465259 26 + TSS region transcription start site region 1989
Tssr58535 6 120465719 to 120465751 32 + TSS region transcription start site region 58535
Tssr58536 6 120465872 to 120465882 10 + TSS region transcription start site region 58536
Tssr58537 6 120465889 to 120465944 55 + TSS region transcription start site region 58537
Tssr1990 6 120466695 to 120466705 10 + TSS region transcription start site region 1990
Tssr1991 6 120471930 to 120471971 41 + TSS region transcription start site region 1991
Tssr58538 6 120472951 to 120472977 26 + TSS region transcription start site region 58538
Tssr1992 6 120473507 to 120473520 13 - TSS region transcription start site region 1992
Tssr58539 6 120473771 to 120473790 19 + TSS region transcription start site region 58539
Tmem121b 6 120488939 to 120493807 4868 - protein coding gene transmembrane protein 121B
Tssr58540 6 120489078 to 120489113 35 + TSS region transcription start site region 58540
Cpgi17923 6 120492169 to 120494333 2164 CpG island CpG island 17923
Tssr62778 6 120493902 to 120493913 11 - TSS region transcription start site region 62778
Tssr62779 6 120493924 to 120493935 11 - TSS region transcription start site region 62779
Tssr62780 6 120493936 to 120494017 81 - TSS region transcription start site region 62780
Gm38888 6 120500342 to 120503539 3197 + lncRNA gene predicted gene, 38888
Hdhd5 6 120509494 to 120531319 21825 - protein coding gene haloacid dehalogenase like hydrolase domain containing 5
Gm20692 6 120512449 to 120513232 783 + antisense lncRNA gene predicted gene 20692
Gm24391 6 120524897 to 120524998 101 + snRNA gene predicted gene, 24391
Cpgi17924 6 120530851 to 120531734 883 CpG island CpG island 17924
Tssr62781 6 120531289 to 120531328 39 - TSS region transcription start site region 62781
Tssr58541 6 120554784 to 120554793 9 + TSS region transcription start site region 58541
1700072O05Rik 6 120554796 to 120562879 8083 + lincRNA gene RIKEN cDNA 1700072O05 gene
Gm44074 6 120577371 to 120577707 336 - pseudogene predicted gene, 44074
Cpgi17925 6 120579565 to 120579744 179 CpG island CpG island 17925
Gm44124 6 120579705 to 120580176 471 - unclassified gene predicted gene, 44124