Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:118011520-120951541

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348 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ibdq2 6 106005405 to 120917141 14911736 QTL inflammatory bowel disease QTL 2
Cia43 6 114182280 to 119760571 5578291 QTL collagen induced arthritis QTL 43
Cpgi17897 6 118010789 to 118012306 1517 CpG island CpG island 17897
Rasgef1a 6 118011475 to 118091546 80071 + protein coding gene RasGEF domain family, member 1A
Tssr58479 6 118054831 to 118054839 8 + TSS region transcription start site region 58479
Tssr58480 6 118058185 to 118058196 11 + TSS region transcription start site region 58480
Cpgi17898 6 118065914 to 118066777 863 CpG island CpG island 17898
Tssr58481 6 118066356 to 118066410 54 + TSS region transcription start site region 58481
Tssr58482 6 118084127 to 118084132 5 + TSS region transcription start site region 58482
Mir7044 6 118085192 to 118085263 71 + miRNA gene microRNA 7044
Csgalnact2 6 118107452 to 118139140 31688 - protein coding gene chondroitin sulfate N-acetylgalactosaminyltransferase 2
Gm23908 6 118111914 to 118112045 131 - snoRNA gene predicted gene, 23908
Cpgi17899 6 118138716 to 118139521 805 CpG island CpG island 17899
Tssr62646 6 118139045 to 118139070 25 - TSS region transcription start site region 62646
Tssr62647 6 118139094 to 118139158 64 - TSS region transcription start site region 62647
Ret 6 118151745 to 118197718 45973 - protein coding gene ret proto-oncogene
Tssr62648 6 118155333 to 118155352 19 - TSS region transcription start site region 62648
Tssr58483 6 118163066 to 118163079 13 + TSS region transcription start site region 58483
Tssr58484 6 118163090 to 118163103 13 + TSS region transcription start site region 58484
Tssr58485 6 118163117 to 118163122 5 + TSS region transcription start site region 58485
Tssr62649 6 118166437 to 118166440 3 - TSS region transcription start site region 62649
Cpgi17900 6 118196433 to 118197805 1372 CpG island CpG island 17900
Tssr62650 6 118197318 to 118197335 17 - TSS region transcription start site region 62650
Tssr1982 6 118197341 to 118197346 5 - TSS region transcription start site region 1982
Tssr62651 6 118197347 to 118197348 1 - TSS region transcription start site region 62651
Tssr62652 6 118197356 to 118197374 18 - TSS region transcription start site region 62652
Tssr62653 6 118197386 to 118197397 11 - TSS region transcription start site region 62653
Tssr62654 6 118197732 to 118197743 11 - TSS region transcription start site region 62654
Tssr62655 6 118197750 to 118197761 11 - TSS region transcription start site region 62655
Tssr62656 6 118197794 to 118197808 14 - TSS region transcription start site region 62656
Tssr58486 6 118198401 to 118198406 5 + TSS region transcription start site region 58486
1700069P05Rik 6 118246695 to 118248452 1757 - lincRNA gene RIKEN cDNA 1700069P05 gene
Gm30557 6 118261686 to 118264033 2347 + lincRNA gene predicted gene, 30557
Tssr1983 6 118277520 to 118277522 2 - TSS region transcription start site region 1983
D6Mit109 6 118289424 to 118289555 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 109
Gm30498 6 118300168 to 118308384 8216 - lincRNA gene predicted gene, 30498
Tssr58487 6 118348411 to 118348430 19 + TSS region transcription start site region 58487
Tssr62657 6 118350447 to 118350475 28 - TSS region transcription start site region 62657
Tssr1984 6 118374749 to 118374758 9 + TSS region transcription start site region 1984
Bms1 6 118383381 to 118419474 36093 - protein coding gene BMS1, ribosome biogenesis factor
Cpgi17901 6 118419074 to 118419951 877 CpG island CpG island 17901
Tssr62658 6 118419336 to 118419351 15 - TSS region transcription start site region 62658
Tssr62659 6 118419358 to 118419387 29 - TSS region transcription start site region 62659
Tssr62660 6 118419388 to 118419441 53 - TSS region transcription start site region 62660
Zfp248 6 118427319 to 118455506 28187 - protein coding gene zinc finger protein 248
Gm25953 6 118429170 to 118429252 82 + miRNA gene predicted gene, 25953
Gm38885 6 118444798 to 118446249 1451 - lncRNA gene predicted gene, 38885
Cpgi17902 6 118454968 to 118455696 728 CpG island CpG island 17902
Tssr62661 6 118455475 to 118455518 43 - TSS region transcription start site region 62661
Zfp9 6 118461950 to 118479320 17370 - protein coding gene zinc finger protein 9
Cpgi17903 6 118478964 to 118479769 805 CpG island CpG island 17903
Tssr62662 6 118479237 to 118479318 81 - TSS region transcription start site region 62662
Gm18223 6 118486885 to 118487706 821 + pseudogene predicted gene, 18223
Ankrd26 6 118501308 to 118562226 60918 - protein coding gene ankyrin repeat domain 26
Cpgi17904 6 118561721 to 118562565 844 CpG island CpG island 17904
Tssr62663 6 118562204 to 118562216 12 - TSS region transcription start site region 62663
Tssr62664 6 118562226 to 118562280 54 - TSS region transcription start site region 62664
Cacna1c 6 118587240 to 119196418 609178 - protein coding gene calcium channel, voltage-dependent, L type, alpha 1C subunit
Cpgi17905 6 118593643 to 118594041 398 CpG island CpG island 17905
Gm38887 6 118598009 to 118600725 2716 + lncRNA gene predicted gene, 38887
Gm18981 6 118617626 to 118619224 1598 - pseudogene predicted gene, 18981
Tssr62665 6 118637973 to 118637983 10 - TSS region transcription start site region 62665
Tssr62666 6 118658742 to 118658748 6 - TSS region transcription start site region 62666
Tssr62667 6 118748279 to 118748283 4 - TSS region transcription start site region 62667
Gm18008 6 118833065 to 118833611 546 - pseudogene predicted gene, 18008
Gm25905 6 118834900 to 118835000 100 + snRNA gene predicted gene, 25905
1700080F18Rik 6 118846044 to 118852978 6934 lncRNA gene RIKEN cDNA 1700080F18 gene
Tssr62668 6 118861460 to 118861465 5 - TSS region transcription start site region 62668
Tssr58488 6 118880152 to 118880163 11 + TSS region transcription start site region 58488
4931430N09Rik 6 118880158 to 118885543 5385 + lncRNA gene RIKEN cDNA 4931430N09 gene
Tssr58489 6 118880164 to 118880175 11 + TSS region transcription start site region 58489
Tssr62669 6 118883603 to 118883623 20 - TSS region transcription start site region 62669
Tssr62670 6 118968131 to 118968147 16 - TSS region transcription start site region 62670
Tssr62671 6 118968354 to 118968360 6 - TSS region transcription start site region 62671
Tssr62672 6 118987137 to 118987142 5 - TSS region transcription start site region 62672
Tssr62673 6 118997383 to 118997395 12 - TSS region transcription start site region 62673
D6Dcr27 6 119012340 to 119012435 95 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 27
Tssr62674 6 119014357 to 119014386 29 - TSS region transcription start site region 62674
Tssr62675 6 119017036 to 119017041 5 - TSS region transcription start site region 62675
6720477C19Rik 6 119029382 to 119030615 1233 unclassified gene RIKEN cDNA 6720477C19 gene
Tssr62676 6 119030863 to 119030874 11 - TSS region transcription start site region 62676
Tssr62677 6 119030939 to 119030980 41 - TSS region transcription start site region 62677
Tssr62678 6 119031027 to 119031045 18 - TSS region transcription start site region 62678
Tssr62679 6 119031195 to 119031219 24 - TSS region transcription start site region 62679
Tssr62680 6 119031256 to 119031273 17 - TSS region transcription start site region 62680
Tssr62681 6 119032714 to 119032726 12 - TSS region transcription start site region 62681
Tssr62682 6 119035939 to 119035943 4 - TSS region transcription start site region 62682
Tssr62683 6 119036987 to 119036991 4 - TSS region transcription start site region 62683
Tssr62684 6 119086660 to 119086672 12 - TSS region transcription start site region 62684
Cpgi17906 6 119107178 to 119109340 2162 CpG island CpG island 17906
Tssr62685 6 119108547 to 119108616 69 - TSS region transcription start site region 62685
Tssr62686 6 119109005 to 119109017 12 - TSS region transcription start site region 62686
Tssr62687 6 119109034 to 119109077 43 - TSS region transcription start site region 62687
Tssr62688 6 119110957 to 119110961 4 - TSS region transcription start site region 62688
Tssr62689 6 119121127 to 119121149 22 - TSS region transcription start site region 62689
Tssr62690 6 119121155 to 119121174 19 - TSS region transcription start site region 62690
Tssr62691 6 119121270 to 119121275 5 - TSS region transcription start site region 62691
Tssr62692 6 119137316 to 119137325 9 - TSS region transcription start site region 62692
Cpgi17907 6 119174922 to 119175841 919 CpG island CpG island 17907
Tssr58490 6 119175247 to 119175292 45 + TSS region transcription start site region 58490
Dcp1b 6 119175253 to 119221616 46363 + protein coding gene decapping mRNA 1B
Tssr62693 6 119188610 to 119188618 8 - TSS region transcription start site region 62693
Tssr62694 6 119196391 to 119196422 31 - TSS region transcription start site region 62694
Tssr62695 6 119196448 to 119196518 70 - TSS region transcription start site region 62695
Tssr62696 6 119196526 to 119196539 13 - TSS region transcription start site region 62696
Tssr62697 6 119196544 to 119196555 11 - TSS region transcription start site region 62697
Tssr62698 6 119196567 to 119196581 14 - TSS region transcription start site region 62698
Tssr62699 6 119196590 to 119196597 7 - TSS region transcription start site region 62699
Tssr62700 6 119196618 to 119196625 7 - TSS region transcription start site region 62700
Tssr62701 6 119196717 to 119196728 11 - TSS region transcription start site region 62701
Tssr1985 6 119196738 to 119196751 13 - TSS region transcription start site region 1985
Tssr58491 6 119215334 to 119215343 9 + TSS region transcription start site region 58491
Tssr58492 6 119215349 to 119215360 11 + TSS region transcription start site region 58492
Tssr58493 6 119236507 to 119236532 25 + TSS region transcription start site region 58493
Cacna2d4 6 119236526 to 119352407 115881 + protein coding gene calcium channel, voltage-dependent, alpha 2/delta subunit 4
Tssr58494 6 119236579 to 119236598 19 + TSS region transcription start site region 58494
Tssr58495 6 119267461 to 119267505 44 + TSS region transcription start site region 58495
Tssr62702 6 119314124 to 119314155 31 - TSS region transcription start site region 62702
Lrtm2 6 119315133 to 119330766 15633 - protein coding gene leucine-rich repeats and transmembrane domains 2
Cpgi17908 6 119330341 to 119331149 808 CpG island CpG island 17908
Tssr62703 6 119330568 to 119330583 15 - TSS region transcription start site region 62703
Tssr62704 6 119330593 to 119330607 14 - TSS region transcription start site region 62704
Tssr62705 6 119330668 to 119330694 26 - TSS region transcription start site region 62705
Tssr62706 6 119330700 to 119330712 12 - TSS region transcription start site region 62706
Tssr62707 6 119330723 to 119330800 77 - TSS region transcription start site region 62707
Tssr62708 6 119330806 to 119330817 11 - TSS region transcription start site region 62708
Tssr58496 6 119336369 to 119336417 48 + TSS region transcription start site region 58496
Tssr58497 6 119336424 to 119336431 7 + TSS region transcription start site region 58497
Tssr58498 6 119349726 to 119349731 5 + TSS region transcription start site region 58498
Adipor2 6 119353150 to 119417483 64333 - protein coding gene adiponectin receptor 2
Tssr62709 6 119359487 to 119359517 30 - TSS region transcription start site region 62709
Tssr58499 6 119386655 to 119386681 26 + TSS region transcription start site region 58499
Cpgi17909 6 119387934 to 119389145 1211 CpG island CpG island 17909
Tssr62710 6 119388671 to 119388739 68 - TSS region transcription start site region 62710
Tssr62711 6 119388752 to 119388772 20 - TSS region transcription start site region 62711
Tssr58500 6 119388872 to 119388888 16 + TSS region transcription start site region 58500
Tssr58501 6 119388890 to 119388920 30 + TSS region transcription start site region 58501
Tssr62712 6 119388964 to 119388968 4 - TSS region transcription start site region 62712
Tssr62713 6 119389022 to 119389031 9 - TSS region transcription start site region 62713
Tssr62714 6 119399119 to 119399121 2 - TSS region transcription start site region 62714
Tssr62715 6 119401982 to 119401998 16 - TSS region transcription start site region 62715
Tssr62716 6 119417479 to 119417530 51 - TSS region transcription start site region 62716
Tssr62717 6 119417547 to 119417558 11 - TSS region transcription start site region 62717
Tssr62718 6 119417599 to 119417623 24 - TSS region transcription start site region 62718
Tssr62719 6 119417678 to 119417707 29 - TSS region transcription start site region 62719
Wnt5b 6 119432531 to 119544347 111816 - protein coding gene wingless-type MMTV integration site family, member 5B
Cpgi17910 6 119448869 to 119449277 408 CpG island CpG island 17910
Tssr62720 6 119467191 to 119467202 11 - TSS region transcription start site region 62720
Tssr62721 6 119467210 to 119467223 13 - TSS region transcription start site region 62721
Gm40397 6 119467362 to 119476311 8949 + lncRNA gene predicted gene, 40397
Cpgi17911 6 119478868 to 119481299 2431 CpG island CpG island 17911
Tssr58502 6 119479480 to 119479502 22 + TSS region transcription start site region 58502
Tssr58503 6 119479504 to 119479530 26 + TSS region transcription start site region 58503
Tssr58504 6 119479531 to 119479547 16 + TSS region transcription start site region 58504
Fbxl14 6 119479668 to 119482630 2962 + protein coding gene F-box and leucine-rich repeat protein 14
Tssr58505 6 119479745 to 119479795 50 + TSS region transcription start site region 58505
Tssr62722 6 119480459 to 119480494 35 - TSS region transcription start site region 62722
Tssr58506 6 119481382 to 119481394 12 + TSS region transcription start site region 58506
Tssr58507 6 119481460 to 119481488 28 + TSS region transcription start site region 58507
Tssr58508 6 119481520 to 119481541 21 + TSS region transcription start site region 58508
Tssr58509 6 119481545 to 119481563 18 + TSS region transcription start site region 58509
Tssr62723 6 119481557 to 119481580 23 - TSS region transcription start site region 62723
Tssr58510 6 119481938 to 119481951 13 + TSS region transcription start site region 58510
Tssr58511 6 119515697 to 119515700 3 + TSS region transcription start site region 58511
Tssr62724 6 119517954 to 119517959 5 - TSS region transcription start site region 62724
Gm30690 6 119518005 to 119531087 13082 + lncRNA gene predicted gene, 30690
Cpgi17912 6 119543188 to 119544842 1654 CpG island CpG island 17912
Tssr62725 6 119544282 to 119544304 22 - TSS region transcription start site region 62725
Erc1 6 119570796 to 119848167 277371 - protein coding gene ELKS/RAB6-interacting/CAST family member 1
Gm44317 6 119570941 to 119578057 7116 + antisense lncRNA gene predicted gene, 44317
Tssr62726 6 119673803 to 119673807 4 - TSS region transcription start site region 62726
Tssr58512 6 119690192 to 119690200 8 + TSS region transcription start site region 58512
Tssr62727 6 119714061 to 119714081 20 - TSS region transcription start site region 62727
Tssr62728 6 119818314 to 119818344 30 - TSS region transcription start site region 62728
Cpgi17913 6 119847363 to 119848866 1503 CpG island CpG island 17913
Tssr62729 6 119848069 to 119848078 9 - TSS region transcription start site region 62729
Tssr62730 6 119848093 to 119848113 20 - TSS region transcription start site region 62730
Tssr62731 6 119848120 to 119848168 48 - TSS region transcription start site region 62731
3110021A11Rik 6 119848193 to 119849029 836 + lncRNA gene RIKEN cDNA 3110021A11 gene
Gm15532 6 119892920 to 119893800 880 + pseudogene predicted gene 15532
4930540M05Rik 6 119896159 to 119902653 6494 - lincRNA gene RIKEN cDNA 4930540M05 gene
Cpgi17914 6 119902371 to 119903190 819 CpG island CpG island 17914
Tssr1986 6 119902450 to 119902463 13 + TSS region transcription start site region 1986
Tssr58513 6 119902688 to 119902734 46 + TSS region transcription start site region 58513
Rad52 6 119902698 to 119922828 20130 + protein coding gene RAD52 homolog, DNA repair protein
Tssr58514 6 119902741 to 119902754 13 + TSS region transcription start site region 58514
Tssr58515 6 119904255 to 119904260 5 + TSS region transcription start site region 58515
Cpgi17915 6 119918963 to 119919134 171 CpG island CpG island 17915
Tssr62732 6 119921611 to 119921615 4 - TSS region transcription start site region 62732
Tssr58516 6 119922191 to 119922202 11 + TSS region transcription start site region 58516
Tssr58517 6 119922208 to 119922216 8 + TSS region transcription start site region 58517
Wnk1 6 119923969 to 120038672 114703 - protein coding gene WNK lysine deficient protein kinase 1
Tssr62733 6 119925853 to 119925875 22 - TSS region transcription start site region 62733
Tssr62734 6 119926295 to 119926300 5 - TSS region transcription start site region 62734
Tssr62735 6 119933697 to 119933699 2 - TSS region transcription start site region 62735
Tssr62736 6 119948491 to 119948547 56 - TSS region transcription start site region 62736
Tssr62737 6 119948686 to 119948704 18 - TSS region transcription start site region 62737
Tssr62738 6 119961256 to 119961261 5 - TSS region transcription start site region 62738
Tssr62739 6 119963834 to 119963836 2 - TSS region transcription start site region 62739
Tssr62740 6 119966039 to 119966042 3 - TSS region transcription start site region 62740