Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:11799084-13699095

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ndufa4 6 11900373 to 11907446 7073 - protein coding gene Ndufa4, mitochondrial complex associated
Cpgi17160 6 11907173 to 11908092 919 CpG island CpG island 17160
Tssr59822 6 11907419 to 11907484 65 - TSS region transcription start site region 59822
Tssr54938 6 11907751 to 11907793 42 + TSS region transcription start site region 54938
Phf14 6 11907809 to 12081205 173396 + protein coding gene PHD finger protein 14
Tssr54939 6 11907824 to 11907902 78 + TSS region transcription start site region 54939
Cpgi17161 6 11925665 to 11926658 993 CpG island CpG island 17161
Tssr54940 6 11925869 to 11925941 72 + TSS region transcription start site region 54940
Tssr54941 6 11925958 to 11925969 11 + TSS region transcription start site region 54941
Tssr54942 6 11926128 to 11926195 67 + TSS region transcription start site region 54942
Tssr54943 6 11926758 to 11926790 32 + TSS region transcription start site region 54943
Tssr54944 6 11933380 to 11933405 25 + TSS region transcription start site region 54944
Tssr54945 6 11935188 to 11935189 1 + TSS region transcription start site region 54945
Tssr59823 6 11998347 to 11998351 4 - TSS region transcription start site region 59823
Tssr54946 6 12019831 to 12019834 3 + TSS region transcription start site region 54946
Tssr54947 6 12041374 to 12041395 21 + TSS region transcription start site region 54947
Gm6578 6 12099518 to 12109580 10062 - pseudogene predicted gene 6578
Tssr54948 6 12128561 to 12128563 2 + TSS region transcription start site region 54948
Gm32222 6 12128626 to 12128923 297 + pseudogene predicted gene, 32222
Gm35961 6 12167667 to 12212559 44892 + lncRNA gene predicted gene, 35961
D6Mit234 6 12254797 to 12254946 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 234
Thsd7a 6 12311608 to 12749253 437645 - protein coding gene thrombospondin, type I, domain containing 7A
Tssr59824 6 12315263 to 12315280 17 - TSS region transcription start site region 59824
Gm38583 6 12435014 to 12478332 43318 + lncRNA gene predicted gene, 38583
Cpgi17162 6 12555189 to 12555592 403 CpG island CpG island 17162
Gm16123 6 12565488 to 12566914 1426 + pseudogene predicted gene 16123
D6Mit169 6 12589175 to 12589373 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 169
Gm44129 6 12608996 to 12658956 49960 + lincRNA gene predicted gene, 44129
Tssr59825 6 12706778 to 12706780 2 - TSS region transcription start site region 59825
Tssr59826 6 12724614 to 12724618 4 - TSS region transcription start site region 59826
Tssr59827 6 12726180 to 12726199 19 - TSS region transcription start site region 59827
n-R5s160 6 12742899 to 12743018 119 + rRNA gene nuclear encoded rRNA 5S 160
Cpgi17163 6 12748690 to 12749551 861 CpG island CpG island 17163
Tssr59828 6 12749070 to 12749079 9 - TSS region transcription start site region 59828
Tssr59829 6 12749084 to 12749095 11 - TSS region transcription start site region 59829
Tssr59830 6 12749153 to 12749167 14 - TSS region transcription start site region 59830
Tssr1780 6 12749185 to 12749190 5 - TSS region transcription start site region 1780
Tssr59831 6 12749193 to 12749209 16 - TSS region transcription start site region 59831
Tssr59832 6 12749435 to 12749440 5 - TSS region transcription start site region 59832
Tssr59833 6 12786654 to 12786666 12 - TSS region transcription start site region 59833
Gm18221 6 12809066 to 12874600 65534 - pseudogene predicted gene, 18221
Gm15529 6 12857397 to 12858390 993 + pseudogene predicted gene 15529
Tssr54949 6 12911081 to 12911085 4 + TSS region transcription start site region 54949
Gm44472 6 12917525 to 12918467 942 + unclassified gene predicted gene, 44472
Gm5300 6 13055595 to 13056597 1002 - pseudogene predicted gene 5300
Cpgi17164 6 13069585 to 13070247 662 CpG island CpG island 17164
Tssr54950 6 13069750 to 13069755 5 + TSS region transcription start site region 54950
Tssr54951 6 13069758 to 13069866 108 + TSS region transcription start site region 54951
Tmem106b 6 13069759 to 13089269 19510 + protein coding gene transmembrane protein 106B
Tssr54952 6 13069879 to 13069895 16 + TSS region transcription start site region 54952
Gm24985 6 13111299 to 13111427 128 + snoRNA gene predicted gene, 24985
Vwde 6 13185610 to 13224965 39355 - protein coding gene von Willebrand factor D and EGF domains
Gm725 6 13263695 to 13264606 911 + protein coding gene predicted gene 725
D6Mit83 6 13400268 to 13400420 152 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 83
Tssr54953 6 13413334 to 13413361 27 + TSS region transcription start site region 54953
1700016P04Rik 6 13413337 to 13415996 2659 + lincRNA gene RIKEN cDNA 1700016P04 gene
Tssr54954 6 13413365 to 13413369 4 + TSS region transcription start site region 54954
Gm2796 6 13461462 to 13461957 495 - pseudogene predicted gene 2796
Tssr59834 6 13461995 to 13461996 1 - TSS region transcription start site region 59834
Gm25737 6 13549506 to 13549612 106 + snRNA gene predicted gene, 25737
Tmem168 6 13580687 to 13608100 27413 - protein coding gene transmembrane protein 168
Cpgi17165 6 13607470 to 13608578 1108 CpG island CpG island 17165
Tssr59835 6 13608011 to 13608050 39 - TSS region transcription start site region 59835
Bmt2 6 13625675 to 13677966 52291 - protein coding gene base methyltransferase of 25S rRNA 2
Tssr59836 6 13650969 to 13650988 19 - TSS region transcription start site region 59836
Tssr59837 6 13654130 to 13654157 27 - TSS region transcription start site region 59837
Cpgi17166 6 13677056 to 13678363 1307 CpG island CpG island 17166
Tssr59838 6 13677890 to 13677895 5 - TSS region transcription start site region 59838
Tssr59839 6 13677907 to 13677923 16 - TSS region transcription start site region 59839
Tssr59840 6 13677930 to 13677974 44 - TSS region transcription start site region 59840
Tssr54955 6 13682626 to 13682632 6 + TSS region transcription start site region 54955