Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:116733657-117613668

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr62614 6 116735331 to 116735347 16 - TSS region transcription start site region 62614
Tssr62615 6 116735357 to 116735375 18 - TSS region transcription start site region 62615
Tssr62616 6 116735388 to 116735399 11 - TSS region transcription start site region 62616
Gm22882 6 116765529 to 116765652 123 - snoRNA gene predicted gene, 22882
Gm36788 6 116771713 to 116775339 3626 - lncRNA gene predicted gene, 36788
Gm36873 6 116794465 to 116860522 66057 + lncRNA gene predicted gene, 36873
Tssr58388 6 116857957 to 116857967 10 + TSS region transcription start site region 58388
Gm43926 6 116953519 to 116953948 429 + pseudogene predicted gene, 43926
Tssr58389 6 116970983 to 116970984 1 + TSS region transcription start site region 58389
Gm43929 6 116982019 to 116982427 408 + pseudogene predicted gene, 43929
Cpgi17887 6 117081111 to 117081342 231 CpG island CpG island 17887
D6Ertd490e 6 117112829 to 117113058 229 DNA segment DNA segment, Chr 6, ERATO Doi 490, expressed
D6Mit367 6 117127231 to 117127378 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 367
Gm43930 6 117144325 to 117145169 844 + unclassified gene predicted gene, 43930
2810048H02Rik 6 117145162 to 117152542 7380 - lncRNA gene RIKEN cDNA 2810048H02 gene
D6Mit330 6 117147630 to 117147748 118 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 330
D030044L04Rik 6 117160773 to 117162808 2035 + lincRNA gene RIKEN cDNA D030044L04 gene
Cpgi17888 6 117168318 to 117169541 1223 CpG island CpG island 17888
Cxcl12 6 117168535 to 117181367 12832 + protein coding gene chemokine (C-X-C motif) ligand 12
Tssr58390 6 117168566 to 117168584 18 + TSS region transcription start site region 58390
Tssr58391 6 117169999 to 117170005 6 + TSS region transcription start site region 58391
Tssr58392 6 117171476 to 117171487 11 + TSS region transcription start site region 58392
Tssr58393 6 117171488 to 117171506 18 + TSS region transcription start site region 58393
Tssr58394 6 117171508 to 117171546 38 + TSS region transcription start site region 58394
Tssr58395 6 117173492 to 117173505 13 + TSS region transcription start site region 58395
Tssr58396 6 117173508 to 117173519 11 + TSS region transcription start site region 58396
Tssr58397 6 117173546 to 117173554 8 + TSS region transcription start site region 58397
Tssr62617 6 117173556 to 117173576 20 - TSS region transcription start site region 62617
Tssr58398 6 117173572 to 117173577 5 + TSS region transcription start site region 58398
Tssr62618 6 117173578 to 117173599 21 - TSS region transcription start site region 62618
Tssr58399 6 117173594 to 117173606 12 + TSS region transcription start site region 58399
Tssr62619 6 117173614 to 117173635 21 - TSS region transcription start site region 62619
Tssr58400 6 117173622 to 117173639 17 + TSS region transcription start site region 58400
Tssr62620 6 117173657 to 117173668 11 - TSS region transcription start site region 62620
Tssr58401 6 117173658 to 117173673 15 + TSS region transcription start site region 58401
Tssr58402 6 117173689 to 117173702 13 + TSS region transcription start site region 58402
Tssr58403 6 117173707 to 117173720 13 + TSS region transcription start site region 58403
Tssr62621 6 117173723 to 117173752 29 - TSS region transcription start site region 62621
Tssr58404 6 117173726 to 117173731 5 + TSS region transcription start site region 58404
Tssr58405 6 117173768 to 117173787 19 + TSS region transcription start site region 58405
Tssr58406 6 117173798 to 117173816 18 + TSS region transcription start site region 58406
Tssr58407 6 117173829 to 117173838 9 + TSS region transcription start site region 58407
Tssr58408 6 117173896 to 117173901 5 + TSS region transcription start site region 58408
Tssr58409 6 117173918 to 117173929 11 + TSS region transcription start site region 58409
Tssr58410 6 117173940 to 117173947 7 + TSS region transcription start site region 58410
Tssr58411 6 117173956 to 117173978 22 + TSS region transcription start site region 58411
Tssr58412 6 117173983 to 117173990 7 + TSS region transcription start site region 58412
Tssr58413 6 117173996 to 117174014 18 + TSS region transcription start site region 58413
Tssr58414 6 117174029 to 117174036 7 + TSS region transcription start site region 58414
Tssr58415 6 117174044 to 117174054 10 + TSS region transcription start site region 58415
Tssr58416 6 117174059 to 117174072 13 + TSS region transcription start site region 58416
Tssr58417 6 117174113 to 117174126 13 + TSS region transcription start site region 58417
Tssr58418 6 117174146 to 117174152 6 + TSS region transcription start site region 58418
Tssr58419 6 117174165 to 117174172 7 + TSS region transcription start site region 58419
Tssr58420 6 117174192 to 117174207 15 + TSS region transcription start site region 58420
Tssr58421 6 117174211 to 117174231 20 + TSS region transcription start site region 58421
Tssr58422 6 117174237 to 117174244 7 + TSS region transcription start site region 58422
Tssr58423 6 117174245 to 117174265 20 + TSS region transcription start site region 58423
Tssr62622 6 117174275 to 117174292 17 - TSS region transcription start site region 62622
Tssr62623 6 117174293 to 117174312 19 - TSS region transcription start site region 62623
Tssr58424 6 117174307 to 117174324 17 + TSS region transcription start site region 58424
Tssr58425 6 117174352 to 117174363 11 + TSS region transcription start site region 58425
Tssr58426 6 117174374 to 117174381 7 + TSS region transcription start site region 58426
Tssr58427 6 117174401 to 117174415 14 + TSS region transcription start site region 58427
Tssr62624 6 117174408 to 117174458 50 - TSS region transcription start site region 62624
Tssr58428 6 117174416 to 117174426 10 + TSS region transcription start site region 58428
Tssr58429 6 117174481 to 117174504 23 + TSS region transcription start site region 58429
Tssr58430 6 117174526 to 117174535 9 + TSS region transcription start site region 58430
Tssr62625 6 117174559 to 117174597 38 - TSS region transcription start site region 62625
Tssr58431 6 117174622 to 117174634 12 + TSS region transcription start site region 58431
Tssr62626 6 117174655 to 117174662 7 - TSS region transcription start site region 62626
Tssr62627 6 117174686 to 117174707 21 - TSS region transcription start site region 62627
Tssr58432 6 117174695 to 117174715 20 + TSS region transcription start site region 58432
Tssr58433 6 117174731 to 117174740 9 + TSS region transcription start site region 58433
Tssr62628 6 117174821 to 117174839 18 - TSS region transcription start site region 62628
Tssr62629 6 117175001 to 117175019 18 - TSS region transcription start site region 62629
Tssr58434 6 117175169 to 117175187 18 + TSS region transcription start site region 58434
Tssr58435 6 117178695 to 117178707 12 + TSS region transcription start site region 58435
Tssr58436 6 117178712 to 117178725 13 + TSS region transcription start site region 58436
Tssr58437 6 117178787 to 117178801 14 + TSS region transcription start site region 58437
Tssr58438 6 117178960 to 117178968 8 + TSS region transcription start site region 58438
Tssr58439 6 117178983 to 117178990 7 + TSS region transcription start site region 58439
Tssr58440 6 117179016 to 117179044 28 + TSS region transcription start site region 58440
Tssr62630 6 117179092 to 117179110 18 - TSS region transcription start site region 62630
Tssr58441 6 117179208 to 117179235 27 + TSS region transcription start site region 58441
Tssr62631 6 117179360 to 117179377 17 - TSS region transcription start site region 62631
Tssr58442 6 117179655 to 117179661 6 + TSS region transcription start site region 58442
Tssr62632 6 117179827 to 117179849 22 - TSS region transcription start site region 62632
Tssr58443 6 117179971 to 117179983 12 + TSS region transcription start site region 58443
Tssr58444 6 117180895 to 117180907 12 + TSS region transcription start site region 58444
Rpl28-ps4 6 117213690 to 117214066 376 - pseudogene ribosomal protein L28, pseudogene 4
Tssr62633 6 117214105 to 117214114 9 - TSS region transcription start site region 62633
Tssr62634 6 117299529 to 117299547 18 - TSS region transcription start site region 62634
Gm4640 6 117420577 to 117423617 3040 - lincRNA gene predicted gene 4640
Gm6227 6 117472998 to 117473418 420 - pseudogene predicted gene 6227
Tssr62635 6 117473115 to 117473131 16 - TSS region transcription start site region 62635
D6Mit288 6 117489535 to 117489659 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 288
4930477O03Rik 6 117495066 to 117495483 417 unclassified non-coding RNA gene RIKEN cDNA 4930477O03 gene
6820426E19Rik 6 117495235 to 117500077 4842 + lincRNA gene RIKEN cDNA 6820426E19 gene
D6Mit332 6 117518646 to 117518762 116 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 332
Gm18965 6 117541023 to 117542914 1891 - pseudogene predicted gene, 18965
Gm9946 6 117558835 to 117568244 9409 + lincRNA gene predicted gene 9946
Tssr58445 6 117559694 to 117559700 6 + TSS region transcription start site region 58445
Gm45083 6 117578715 to 117612570 33855 - lincRNA gene predicted gene 45083
Tssr62636 6 117612562 to 117612579 17 - TSS region transcription start site region 62636