Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:116733519-117173948

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr62614 6 116735331 to 116735347 16 - TSS region transcription start site region 62614
Tssr62615 6 116735357 to 116735375 18 - TSS region transcription start site region 62615
Tssr62616 6 116735388 to 116735399 11 - TSS region transcription start site region 62616
Gm22882 6 116765529 to 116765652 123 - snoRNA gene predicted gene, 22882
Gm36788 6 116771713 to 116775339 3626 - lncRNA gene predicted gene, 36788
Gm36873 6 116794465 to 116860522 66057 + lncRNA gene predicted gene, 36873
Tssr58388 6 116857957 to 116857967 10 + TSS region transcription start site region 58388
Gm43926 6 116953519 to 116953948 429 + pseudogene predicted gene, 43926
Tssr58389 6 116970983 to 116970984 1 + TSS region transcription start site region 58389
Gm43929 6 116982019 to 116982427 408 + pseudogene predicted gene, 43929
Cpgi17887 6 117081111 to 117081342 231 CpG island CpG island 17887
D6Ertd490e 6 117112829 to 117113058 229 DNA segment DNA segment, Chr 6, ERATO Doi 490, expressed
D6Mit367 6 117127231 to 117127378 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 367
Gm43930 6 117144325 to 117145169 844 + unclassified gene predicted gene, 43930
2810048H02Rik 6 117145162 to 117152542 7380 - lncRNA gene RIKEN cDNA 2810048H02 gene
D6Mit330 6 117147630 to 117147748 118 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 330
D030044L04Rik 6 117160773 to 117162808 2035 + lincRNA gene RIKEN cDNA D030044L04 gene
Cpgi17888 6 117168318 to 117169541 1223 CpG island CpG island 17888
Cxcl12 6 117168535 to 117181367 12832 + protein coding gene chemokine (C-X-C motif) ligand 12
Tssr58390 6 117168566 to 117168584 18 + TSS region transcription start site region 58390
Tssr58391 6 117169999 to 117170005 6 + TSS region transcription start site region 58391
Tssr58392 6 117171476 to 117171487 11 + TSS region transcription start site region 58392
Tssr58393 6 117171488 to 117171506 18 + TSS region transcription start site region 58393
Tssr58394 6 117171508 to 117171546 38 + TSS region transcription start site region 58394
Tssr58395 6 117173492 to 117173505 13 + TSS region transcription start site region 58395
Tssr58396 6 117173508 to 117173519 11 + TSS region transcription start site region 58396
Tssr58397 6 117173546 to 117173554 8 + TSS region transcription start site region 58397
Tssr62617 6 117173556 to 117173576 20 - TSS region transcription start site region 62617
Tssr58398 6 117173572 to 117173577 5 + TSS region transcription start site region 58398
Tssr62618 6 117173578 to 117173599 21 - TSS region transcription start site region 62618
Tssr58399 6 117173594 to 117173606 12 + TSS region transcription start site region 58399
Tssr62619 6 117173614 to 117173635 21 - TSS region transcription start site region 62619
Tssr58400 6 117173622 to 117173639 17 + TSS region transcription start site region 58400
Tssr62620 6 117173657 to 117173668 11 - TSS region transcription start site region 62620
Tssr58401 6 117173658 to 117173673 15 + TSS region transcription start site region 58401
Tssr58402 6 117173689 to 117173702 13 + TSS region transcription start site region 58402
Tssr58403 6 117173707 to 117173720 13 + TSS region transcription start site region 58403
Tssr62621 6 117173723 to 117173752 29 - TSS region transcription start site region 62621
Tssr58404 6 117173726 to 117173731 5 + TSS region transcription start site region 58404
Tssr58405 6 117173768 to 117173787 19 + TSS region transcription start site region 58405
Tssr58406 6 117173798 to 117173816 18 + TSS region transcription start site region 58406
Tssr58407 6 117173829 to 117173838 9 + TSS region transcription start site region 58407
Tssr58408 6 117173896 to 117173901 5 + TSS region transcription start site region 58408
Tssr58409 6 117173918 to 117173929 11 + TSS region transcription start site region 58409
Tssr58410 6 117173940 to 117173947 7 + TSS region transcription start site region 58410