Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:116720577-118123617

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr62614 6 116735331 to 116735347 16 - TSS region transcription start site region 62614
Tssr62615 6 116735357 to 116735375 18 - TSS region transcription start site region 62615
Tssr62616 6 116735388 to 116735399 11 - TSS region transcription start site region 62616
Gm22882 6 116765529 to 116765652 123 - snoRNA gene predicted gene, 22882
Gm36788 6 116771713 to 116775339 3626 - lncRNA gene predicted gene, 36788
Gm36873 6 116794465 to 116860522 66057 + lncRNA gene predicted gene, 36873
Tssr58388 6 116857957 to 116857967 10 + TSS region transcription start site region 58388
Gm43926 6 116953519 to 116953948 429 + pseudogene predicted gene, 43926
Tssr58389 6 116970983 to 116970984 1 + TSS region transcription start site region 58389
Gm43929 6 116982019 to 116982427 408 + pseudogene predicted gene, 43929
Cpgi17887 6 117081111 to 117081342 231 CpG island CpG island 17887
D6Ertd490e 6 117112829 to 117113058 229 DNA segment DNA segment, Chr 6, ERATO Doi 490, expressed
D6Mit367 6 117127231 to 117127378 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 367
Gm43930 6 117144325 to 117145169 844 + unclassified gene predicted gene, 43930
2810048H02Rik 6 117145162 to 117152542 7380 - lncRNA gene RIKEN cDNA 2810048H02 gene
D6Mit330 6 117147630 to 117147748 118 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 330
D030044L04Rik 6 117160773 to 117162808 2035 + lincRNA gene RIKEN cDNA D030044L04 gene
Cpgi17888 6 117168318 to 117169541 1223 CpG island CpG island 17888
Cxcl12 6 117168535 to 117181367 12832 + protein coding gene chemokine (C-X-C motif) ligand 12
Tssr58390 6 117168566 to 117168584 18 + TSS region transcription start site region 58390
Tssr58391 6 117169999 to 117170005 6 + TSS region transcription start site region 58391
Tssr58392 6 117171476 to 117171487 11 + TSS region transcription start site region 58392
Tssr58393 6 117171488 to 117171506 18 + TSS region transcription start site region 58393
Tssr58394 6 117171508 to 117171546 38 + TSS region transcription start site region 58394
Tssr58395 6 117173492 to 117173505 13 + TSS region transcription start site region 58395
Tssr58396 6 117173508 to 117173519 11 + TSS region transcription start site region 58396
Tssr58397 6 117173546 to 117173554 8 + TSS region transcription start site region 58397
Tssr62617 6 117173556 to 117173576 20 - TSS region transcription start site region 62617
Tssr58398 6 117173572 to 117173577 5 + TSS region transcription start site region 58398
Tssr62618 6 117173578 to 117173599 21 - TSS region transcription start site region 62618
Tssr58399 6 117173594 to 117173606 12 + TSS region transcription start site region 58399
Tssr62619 6 117173614 to 117173635 21 - TSS region transcription start site region 62619
Tssr58400 6 117173622 to 117173639 17 + TSS region transcription start site region 58400
Tssr62620 6 117173657 to 117173668 11 - TSS region transcription start site region 62620
Tssr58401 6 117173658 to 117173673 15 + TSS region transcription start site region 58401
Tssr58402 6 117173689 to 117173702 13 + TSS region transcription start site region 58402
Tssr58403 6 117173707 to 117173720 13 + TSS region transcription start site region 58403
Tssr62621 6 117173723 to 117173752 29 - TSS region transcription start site region 62621
Tssr58404 6 117173726 to 117173731 5 + TSS region transcription start site region 58404
Tssr58405 6 117173768 to 117173787 19 + TSS region transcription start site region 58405
Tssr58406 6 117173798 to 117173816 18 + TSS region transcription start site region 58406
Tssr58407 6 117173829 to 117173838 9 + TSS region transcription start site region 58407
Tssr58408 6 117173896 to 117173901 5 + TSS region transcription start site region 58408
Tssr58409 6 117173918 to 117173929 11 + TSS region transcription start site region 58409
Tssr58410 6 117173940 to 117173947 7 + TSS region transcription start site region 58410
Tssr58411 6 117173956 to 117173978 22 + TSS region transcription start site region 58411
Tssr58412 6 117173983 to 117173990 7 + TSS region transcription start site region 58412
Tssr58413 6 117173996 to 117174014 18 + TSS region transcription start site region 58413
Tssr58414 6 117174029 to 117174036 7 + TSS region transcription start site region 58414
Tssr58415 6 117174044 to 117174054 10 + TSS region transcription start site region 58415
Tssr58416 6 117174059 to 117174072 13 + TSS region transcription start site region 58416
Tssr58417 6 117174113 to 117174126 13 + TSS region transcription start site region 58417
Tssr58418 6 117174146 to 117174152 6 + TSS region transcription start site region 58418
Tssr58419 6 117174165 to 117174172 7 + TSS region transcription start site region 58419
Tssr58420 6 117174192 to 117174207 15 + TSS region transcription start site region 58420
Tssr58421 6 117174211 to 117174231 20 + TSS region transcription start site region 58421
Tssr58422 6 117174237 to 117174244 7 + TSS region transcription start site region 58422
Tssr58423 6 117174245 to 117174265 20 + TSS region transcription start site region 58423
Tssr62622 6 117174275 to 117174292 17 - TSS region transcription start site region 62622
Tssr62623 6 117174293 to 117174312 19 - TSS region transcription start site region 62623
Tssr58424 6 117174307 to 117174324 17 + TSS region transcription start site region 58424
Tssr58425 6 117174352 to 117174363 11 + TSS region transcription start site region 58425
Tssr58426 6 117174374 to 117174381 7 + TSS region transcription start site region 58426
Tssr58427 6 117174401 to 117174415 14 + TSS region transcription start site region 58427
Tssr62624 6 117174408 to 117174458 50 - TSS region transcription start site region 62624
Tssr58428 6 117174416 to 117174426 10 + TSS region transcription start site region 58428
Tssr58429 6 117174481 to 117174504 23 + TSS region transcription start site region 58429
Tssr58430 6 117174526 to 117174535 9 + TSS region transcription start site region 58430
Tssr62625 6 117174559 to 117174597 38 - TSS region transcription start site region 62625
Tssr58431 6 117174622 to 117174634 12 + TSS region transcription start site region 58431
Tssr62626 6 117174655 to 117174662 7 - TSS region transcription start site region 62626
Tssr62627 6 117174686 to 117174707 21 - TSS region transcription start site region 62627
Tssr58432 6 117174695 to 117174715 20 + TSS region transcription start site region 58432
Tssr58433 6 117174731 to 117174740 9 + TSS region transcription start site region 58433
Tssr62628 6 117174821 to 117174839 18 - TSS region transcription start site region 62628
Tssr62629 6 117175001 to 117175019 18 - TSS region transcription start site region 62629
Tssr58434 6 117175169 to 117175187 18 + TSS region transcription start site region 58434
Tssr58435 6 117178695 to 117178707 12 + TSS region transcription start site region 58435
Tssr58436 6 117178712 to 117178725 13 + TSS region transcription start site region 58436
Tssr58437 6 117178787 to 117178801 14 + TSS region transcription start site region 58437
Tssr58438 6 117178960 to 117178968 8 + TSS region transcription start site region 58438
Tssr58439 6 117178983 to 117178990 7 + TSS region transcription start site region 58439
Tssr58440 6 117179016 to 117179044 28 + TSS region transcription start site region 58440
Tssr62630 6 117179092 to 117179110 18 - TSS region transcription start site region 62630
Tssr58441 6 117179208 to 117179235 27 + TSS region transcription start site region 58441
Tssr62631 6 117179360 to 117179377 17 - TSS region transcription start site region 62631
Tssr58442 6 117179655 to 117179661 6 + TSS region transcription start site region 58442
Tssr62632 6 117179827 to 117179849 22 - TSS region transcription start site region 62632
Tssr58443 6 117179971 to 117179983 12 + TSS region transcription start site region 58443
Tssr58444 6 117180895 to 117180907 12 + TSS region transcription start site region 58444
Rpl28-ps4 6 117213690 to 117214066 376 - pseudogene ribosomal protein L28, pseudogene 4
Tssr62633 6 117214105 to 117214114 9 - TSS region transcription start site region 62633
Tssr62634 6 117299529 to 117299547 18 - TSS region transcription start site region 62634
Gm4640 6 117420577 to 117423617 3040 - lincRNA gene predicted gene 4640
Gm6227 6 117472998 to 117473418 420 - pseudogene predicted gene 6227
Tssr62635 6 117473115 to 117473131 16 - TSS region transcription start site region 62635
D6Mit288 6 117489535 to 117489659 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 288
4930477O03Rik 6 117495066 to 117495483 417 unclassified non-coding RNA gene RIKEN cDNA 4930477O03 gene
6820426E19Rik 6 117495235 to 117500077 4842 + lincRNA gene RIKEN cDNA 6820426E19 gene
D6Mit332 6 117518646 to 117518762 116 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 332
Gm18965 6 117541023 to 117542914 1891 - pseudogene predicted gene, 18965
Gm9946 6 117558835 to 117568244 9409 + lincRNA gene predicted gene 9946
Tssr58445 6 117559694 to 117559700 6 + TSS region transcription start site region 58445
Gm45083 6 117578715 to 117612570 33855 - lincRNA gene predicted gene 45083
Tssr62636 6 117612562 to 117612579 17 - TSS region transcription start site region 62636
Tssr1979 6 117675161 to 117675188 27 - TSS region transcription start site region 1979
1700030F04Rik 6 117679207 to 117751769 72562 - lincRNA gene RIKEN cDNA 1700030F04 gene
Tssr58446 6 117716340 to 117716343 3 + TSS region transcription start site region 58446
Gm7292 6 117716342 to 117718868 2526 + lincRNA gene predicted gene 7292
Gemin6-ps 6 117808720 to 117809220 500 + pseudogene gem nuclear organelle associated protein 6, pseudogene
Cpgi17889 6 117840821 to 117841665 844 CpG island CpG island 17889
Tssr58447 6 117841174 to 117841251 77 + TSS region transcription start site region 58447
Zfp637 6 117841180 to 117845956 4776 + protein coding gene zinc finger protein 637
Tssr58448 6 117841258 to 117841286 28 + TSS region transcription start site region 58448
Tssr58449 6 117861944 to 117861972 28 + TSS region transcription start site region 58449
Cpgi17890 6 117862907 to 117863382 475 CpG island CpG island 17890
Tssr58450 6 117863069 to 117863103 34 + TSS region transcription start site region 58450
Zfp239 6 117863077 to 117872766 9689 + protein coding gene zinc finger protein 239
Cpgi17891 6 117871318 to 117871816 498 CpG island CpG island 17891
Gm38882 6 117878547 to 117884595 6048 + lncRNA gene predicted gene, 38882
Gm38883 6 117878802 to 117881828 3026 - lncRNA gene predicted gene, 38883
Cpgi17892 6 117879081 to 117880110 1029 CpG island CpG island 17892
Tssr62637 6 117879512 to 117879528 16 - TSS region transcription start site region 62637
Tssr58451 6 117879963 to 117879982 19 + TSS region transcription start site region 58451
Tssr58452 6 117879997 to 117880046 49 + TSS region transcription start site region 58452
Tssr62638 6 117891568 to 117891595 27 - TSS region transcription start site region 62638
Gm29509 6 117899201 to 117899521 320 + lincRNA gene predicted gene 29509
Tssr58453 6 117900295 to 117900307 12 + TSS region transcription start site region 58453
Tssr58454 6 117900311 to 117900349 38 + TSS region transcription start site region 58454
Hnrnpf 6 117900340 to 117925622 25282 + protein coding gene heterogeneous nuclear ribonucleoprotein F
Tssr58455 6 117900355 to 117900363 8 + TSS region transcription start site region 58455
Tssr58456 6 117900403 to 117900417 14 + TSS region transcription start site region 58456
Tssr58457 6 117900442 to 117900473 31 + TSS region transcription start site region 58457
4933440N22Rik 6 117905808 to 117907760 1952 - protein coding gene RIKEN cDNA 4933440N22 gene
Cpgi17893 6 117906447 to 117908634 2187 CpG island CpG island 17893
Tssr62639 6 117906494 to 117906502 8 - TSS region transcription start site region 62639
Tssr58458 6 117906720 to 117906726 6 + TSS region transcription start site region 58458
Tssr58459 6 117906755 to 117906801 46 + TSS region transcription start site region 58459
Tssr58460 6 117906809 to 117906863 54 + TSS region transcription start site region 58460
Tssr58461 6 117906897 to 117906922 25 + TSS region transcription start site region 58461
Tssr58462 6 117906936 to 117907008 72 + TSS region transcription start site region 58462
Tssr58463 6 117907025 to 117907029 4 + TSS region transcription start site region 58463
Tssr58464 6 117907071 to 117907093 22 + TSS region transcription start site region 58464
Tssr58465 6 117907102 to 117907153 51 + TSS region transcription start site region 58465
Tssr58466 6 117907173 to 117907184 11 + TSS region transcription start site region 58466
Tssr62640 6 117907661 to 117907671 10 - TSS region transcription start site region 62640
Tssr62641 6 117907695 to 117907733 38 - TSS region transcription start site region 62641
Tssr62642 6 117907753 to 117907761 8 - TSS region transcription start site region 62642
Tssr58467 6 117907776 to 117907786 10 + TSS region transcription start site region 58467
Tssr58468 6 117907795 to 117907832 37 + TSS region transcription start site region 58468
Tssr58469 6 117908770 to 117908774 4 + TSS region transcription start site region 58469
Gm43863 6 117916531 to 117917722 1191 - unclassified gene predicted gene, 43863
Cpgi17894 6 117916540 to 117917700 1160 CpG island CpG island 17894
Tssr1980 6 117916811 to 117916820 9 - TSS region transcription start site region 1980
Tssr58470 6 117916992 to 117917006 14 + TSS region transcription start site region 58470
Tssr58471 6 117917012 to 117917021 9 + TSS region transcription start site region 58471
Tssr58472 6 117917281 to 117917349 68 + TSS region transcription start site region 58472
Tssr58473 6 117917359 to 117917377 18 + TSS region transcription start site region 58473
Tssr58474 6 117922650 to 117922660 10 + TSS region transcription start site region 58474
Tssr58475 6 117926559 to 117926563 4 + TSS region transcription start site region 58475
Fxyd4 6 117933559 to 117937692 4133 - protein coding gene FXYD domain-containing ion transport regulator 4
Gm25535 6 117935469 to 117935593 124 - miRNA gene predicted gene, 25535
Tssr62643 6 117937328 to 117937343 15 - TSS region transcription start site region 62643
Tssr62644 6 117937394 to 117937435 41 - TSS region transcription start site region 62644
Tssr62645 6 117937686 to 117937697 11 - TSS region transcription start site region 62645
Gm38884 6 117984703 to 118008651 23948 + lncRNA gene predicted gene, 38884
Cpgi17895 6 117996966 to 117997549 583 CpG island CpG island 17895
Tssr58476 6 117997077 to 117997100 23 + TSS region transcription start site region 58476
Gm4875 6 117997207 to 117997992 785 + pseudogene predicted gene 4875
Cpgi17896 6 117997740 to 117997990 250 CpG island CpG island 17896
Cpgi17897 6 118010789 to 118012306 1517 CpG island CpG island 17897
Tssr58477 6 118011313 to 118011395 82 + TSS region transcription start site region 58477
Tssr58478 6 118011448 to 118011496 48 + TSS region transcription start site region 58478
Rasgef1a 6 118011475 to 118091546 80071 + protein coding gene RasGEF domain family, member 1A
Tssr1981 6 118011497 to 118011511 14 + TSS region transcription start site region 1981
Tssr58479 6 118054831 to 118054839 8 + TSS region transcription start site region 58479
Tssr58480 6 118058185 to 118058196 11 + TSS region transcription start site region 58480
Cpgi17898 6 118065914 to 118066777 863 CpG island CpG island 17898
Tssr58481 6 118066356 to 118066410 54 + TSS region transcription start site region 58481
Tssr58482 6 118084127 to 118084132 5 + TSS region transcription start site region 58482
Mir7044 6 118085192 to 118085263 71 + miRNA gene microRNA 7044
Csgalnact2 6 118107452 to 118139140 31688 - protein coding gene chondroitin sulfate N-acetylgalactosaminyltransferase 2
Gm23908 6 118111914 to 118112045 131 - snoRNA gene predicted gene, 23908