Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:116361516-116662965

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
March8 6 116338024 to 116409540 71516 + protein coding gene membrane-associated ring finger (C3HC4) 8
Gm23527 6 116371939 to 116372068 129 - snoRNA gene predicted gene, 23527
Gm44237 6 116389462 to 116390397 935 + unclassified gene predicted gene, 44237
Alox5 6 116410077 to 116461178 51101 - protein coding gene arachidonate 5-lipoxygenase
Tssr62563 6 116414044 to 116414053 9 - TSS region transcription start site region 62563
Gm38880 6 116420396 to 116448276 27880 + lncRNA gene predicted gene, 38880
Tssr62564 6 116423986 to 116423987 1 - TSS region transcription start site region 62564
Tssr58372 6 116440086 to 116440091 5 + TSS region transcription start site region 58372
Tssr1975 6 116458865 to 116458902 37 - TSS region transcription start site region 1975
Tssr1976 6 116459404 to 116459411 7 + TSS region transcription start site region 1976
Tssr1977 6 116459435 to 116459471 36 + TSS region transcription start site region 1977
Cpgi17884 6 116460624 to 116461264 640 CpG island CpG island 17884
Tssr62565 6 116461120 to 116461140 20 - TSS region transcription start site region 62565
Tssr62566 6 116461151 to 116461172 21 - TSS region transcription start site region 62566
Gm44076 6 116472854 to 116473373 519 + pseudogene predicted gene, 44076
Olfr211 6 116489117 to 116494540 5423 + protein coding gene olfactory receptor 211
Olfr212 6 116506516 to 116517965 11449 + protein coding gene olfactory receptor 212
Olfr213 6 116540455 to 116541438 983 + protein coding gene olfactory receptor 213
Gm5580 6 116551141 to 116552502 1361 + protein coding gene predicted pseudogene 5580
Olfr214 6 116556427 to 116557389 962 + protein coding gene olfactory receptor 214
Olfr215 6 116582012 to 116582944 932 - protein coding gene olfactory receptor 215
Gm18485 6 116621472 to 116622528 1056 - pseudogene predicted gene, 18485
Zfp422 6 116624016 to 116628999 4983 - protein coding gene zinc finger protein 422
Cpgi17885 6 116628414 to 116629209 795 CpG island CpG island 17885
Tssr62567 6 116628921 to 116628934 13 - TSS region transcription start site region 62567
Tssr62568 6 116628955 to 116629004 49 - TSS region transcription start site region 62568
Tssr62569 6 116629007 to 116629014 7 - TSS region transcription start site region 62569
Tssr58373 6 116629076 to 116629120 44 + TSS region transcription start site region 58373
Tssr62570 6 116629156 to 116629161 5 - TSS region transcription start site region 62570
Gm44154 6 116630222 to 116632945 2723 + unclassified gene predicted gene, 44154
Rassf4 6 116632995 to 116673836 40841 - protein coding gene Ras association (RalGDS/AF-6) domain family member 4
Tssr62571 6 116633305 to 116633316 11 - TSS region transcription start site region 62571
Tssr62572 6 116633344 to 116633355 11 - TSS region transcription start site region 62572
Tssr62573 6 116633409 to 116633415 6 - TSS region transcription start site region 62573
Tssr62574 6 116633567 to 116633595 28 - TSS region transcription start site region 62574
Tssr62575 6 116633814 to 116633828 14 - TSS region transcription start site region 62575
Tssr62576 6 116634942 to 116634960 18 - TSS region transcription start site region 62576
Tssr62577 6 116636946 to 116636968 22 - TSS region transcription start site region 62577
Tssr62578 6 116637322 to 116637338 16 - TSS region transcription start site region 62578
Tssr62579 6 116637819 to 116637850 31 - TSS region transcription start site region 62579
Tssr62580 6 116637872 to 116637894 22 - TSS region transcription start site region 62580
Tssr62581 6 116640317 to 116640343 26 - TSS region transcription start site region 62581
Tssr62582 6 116641453 to 116641482 29 - TSS region transcription start site region 62582
Tssr62583 6 116641731 to 116641747 16 - TSS region transcription start site region 62583
Tssr62584 6 116645155 to 116645181 26 - TSS region transcription start site region 62584
Tssr62585 6 116645224 to 116645247 23 - TSS region transcription start site region 62585
Mir7043 6 116645978 to 116646047 69 - miRNA gene microRNA 7043
Tssr62586 6 116647656 to 116647667 11 - TSS region transcription start site region 62586
Tssr62587 6 116647781 to 116647805 24 - TSS region transcription start site region 62587
Tssr62588 6 116647833 to 116647850 17 - TSS region transcription start site region 62588
Tssr62589 6 116647865 to 116647868 3 - TSS region transcription start site region 62589
Tssr62590 6 116647871 to 116647890 19 - TSS region transcription start site region 62590
Tssr58374 6 116650613 to 116650618 5 + TSS region transcription start site region 58374
Tssr58375 6 116650623 to 116650628 5 + TSS region transcription start site region 58375
Tssr1978 6 116650632 to 116650641 9 + TSS region transcription start site region 1978
Tssr58376 6 116650661 to 116650666 5 + TSS region transcription start site region 58376
Tssr58377 6 116650674 to 116650690 16 + TSS region transcription start site region 58377
Depp1 6 116650684 to 116652847 2163 + protein coding gene DEPP1 autophagy regulator
Tssr58378 6 116650725 to 116650729 4 + TSS region transcription start site region 58378
Tssr58379 6 116651779 to 116651796 17 + TSS region transcription start site region 58379
Tssr58380 6 116651876 to 116651885 9 + TSS region transcription start site region 58380
Tssr58381 6 116652230 to 116652263 33 + TSS region transcription start site region 58381
Tssr62591 6 116655473 to 116655496 23 - TSS region transcription start site region 62591
Tssr62592 6 116656328 to 116656341 13 - TSS region transcription start site region 62592
Tssr62593 6 116656495 to 116656507 12 - TSS region transcription start site region 62593
Tssr62594 6 116656736 to 116656768 32 - TSS region transcription start site region 62594
Tssr62595 6 116656937 to 116656987 50 - TSS region transcription start site region 62595
Tssr62596 6 116657145 to 116657187 42 - TSS region transcription start site region 62596
Tssr62597 6 116657198 to 116657223 25 - TSS region transcription start site region 62597
Tssr62598 6 116657360 to 116657409 49 - TSS region transcription start site region 62598
Tssr62599 6 116657413 to 116657453 40 - TSS region transcription start site region 62599
Tssr62600 6 116657488 to 116657514 26 - TSS region transcription start site region 62600
Tssr62601 6 116657553 to 116657567 14 - TSS region transcription start site region 62601
Tssr62602 6 116659510 to 116659528 18 - TSS region transcription start site region 62602