Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:11617667-12762559

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D6Mit87 6 11796164 to 11796295 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 87
Ndufa4 6 11900373 to 11907446 7073 - protein coding gene Ndufa4, mitochondrial complex associated
Cpgi17160 6 11907173 to 11908092 919 CpG island CpG island 17160
Tssr59822 6 11907419 to 11907484 65 - TSS region transcription start site region 59822
Tssr54938 6 11907751 to 11907793 42 + TSS region transcription start site region 54938
Phf14 6 11907809 to 12081205 173396 + protein coding gene PHD finger protein 14
Tssr54939 6 11907824 to 11907902 78 + TSS region transcription start site region 54939
Cpgi17161 6 11925665 to 11926658 993 CpG island CpG island 17161
Tssr54940 6 11925869 to 11925941 72 + TSS region transcription start site region 54940
Tssr54941 6 11925958 to 11925969 11 + TSS region transcription start site region 54941
Tssr54942 6 11926128 to 11926195 67 + TSS region transcription start site region 54942
Tssr54943 6 11926758 to 11926790 32 + TSS region transcription start site region 54943
Tssr54944 6 11933380 to 11933405 25 + TSS region transcription start site region 54944
Tssr54945 6 11935188 to 11935189 1 + TSS region transcription start site region 54945
Tssr59823 6 11998347 to 11998351 4 - TSS region transcription start site region 59823
Tssr54946 6 12019831 to 12019834 3 + TSS region transcription start site region 54946
Tssr54947 6 12041374 to 12041395 21 + TSS region transcription start site region 54947
Gm6578 6 12099518 to 12109580 10062 - pseudogene predicted gene 6578
Tssr54948 6 12128561 to 12128563 2 + TSS region transcription start site region 54948
Gm32222 6 12128626 to 12128923 297 + pseudogene predicted gene, 32222
Gm35961 6 12167667 to 12212559 44892 + lncRNA gene predicted gene, 35961
D6Mit234 6 12254797 to 12254946 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 234
Thsd7a 6 12311608 to 12749253 437645 - protein coding gene thrombospondin, type I, domain containing 7A
Tssr59824 6 12315263 to 12315280 17 - TSS region transcription start site region 59824
Gm38583 6 12435014 to 12478332 43318 + lncRNA gene predicted gene, 38583
Cpgi17162 6 12555189 to 12555592 403 CpG island CpG island 17162
Gm16123 6 12565488 to 12566914 1426 + pseudogene predicted gene 16123
D6Mit169 6 12589175 to 12589373 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 169
Gm44129 6 12608996 to 12658956 49960 + lincRNA gene predicted gene, 44129
Tssr59825 6 12706778 to 12706780 2 - TSS region transcription start site region 59825
Tssr59826 6 12724614 to 12724618 4 - TSS region transcription start site region 59826
Tssr59827 6 12726180 to 12726199 19 - TSS region transcription start site region 59827
n-R5s160 6 12742899 to 12743018 119 + rRNA gene nuclear encoded rRNA 5S 160
Cpgi17163 6 12748690 to 12749551 861 CpG island CpG island 17163
Tssr59828 6 12749070 to 12749079 9 - TSS region transcription start site region 59828
Tssr59829 6 12749084 to 12749095 11 - TSS region transcription start site region 59829
Tssr59830 6 12749153 to 12749167 14 - TSS region transcription start site region 59830
Tssr1780 6 12749185 to 12749190 5 - TSS region transcription start site region 1780
Tssr59831 6 12749193 to 12749209 16 - TSS region transcription start site region 59831
Tssr59832 6 12749435 to 12749440 5 - TSS region transcription start site region 59832