Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:115923737-116424123

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ift122 6 115853470 to 115926699 73229 + protein coding gene intraflagellar transport 122
Rho 6 115931748 to 115940036 8288 + protein coding gene rhodopsin
Chab3 6 115931748 to 115940036 8288 QTL cholesterol absorption 3
Tssr58331 6 115931855 to 115931858 3 + TSS region transcription start site region 58331
Tssr58332 6 115931897 to 115931919 22 + TSS region transcription start site region 58332
Tssr58333 6 115931922 to 115931937 15 + TSS region transcription start site region 58333
Tssr58334 6 115931938 to 115931963 25 + TSS region transcription start site region 58334
Tssr58335 6 115931964 to 115931978 14 + TSS region transcription start site region 58335
Tssr1973 6 115932156 to 115932174 18 + TSS region transcription start site region 1973
D6Mit44 6 115933269 to 115933416 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 44
Tssr58336 6 115933938 to 115933949 11 + TSS region transcription start site region 58336
Tssr58337 6 115933982 to 115933990 8 + TSS region transcription start site region 58337
Tssr58338 6 115933993 to 115934001 8 + TSS region transcription start site region 58338
Tssr58339 6 115934349 to 115934378 29 + TSS region transcription start site region 58339
Tssr58340 6 115935034 to 115935045 11 + TSS region transcription start site region 58340
Tssr58341 6 115935118 to 115935128 10 + TSS region transcription start site region 58341
Tssr58342 6 115935136 to 115935148 12 + TSS region transcription start site region 58342
Tssr1974 6 115935511 to 115935516 5 + TSS region transcription start site region 1974
Tssr62540 6 115935529 to 115935550 21 - TSS region transcription start site region 62540
Tssr58343 6 115935588 to 115935596 8 + TSS region transcription start site region 58343
Gm43866 6 115935688 to 115936526 838 - unclassified gene predicted gene, 43866
Tssr58344 6 115944936 to 115944943 7 + TSS region transcription start site region 58344
H1foo 6 115944938 to 115950236 5298 + protein coding gene H1 histone family, member O, oocyte-specific
Plxnd1 6 115954811 to 115995005 40194 - protein coding gene plexin D1
Tssr62541 6 115967483 to 115967489 6 - TSS region transcription start site region 62541
Tssr58345 6 115989287 to 115989308 21 + TSS region transcription start site region 58345
Tssr58346 6 115989989 to 115990000 11 + TSS region transcription start site region 58346
Tssr62542 6 115991631 to 115991667 36 - TSS region transcription start site region 62542
Cpgi17879 6 115992953 to 115995412 2459 CpG island CpG island 17879
Tssr62543 6 115994828 to 115994857 29 - TSS region transcription start site region 62543
Tssr62544 6 115994885 to 115994888 3 - TSS region transcription start site region 62544
Tssr62545 6 115994929 to 115994932 3 - TSS region transcription start site region 62545
Tssr62546 6 115994939 to 115994945 6 - TSS region transcription start site region 62546
Tssr62547 6 115994953 to 115995010 57 - TSS region transcription start site region 62547
Tssr58347 6 115995097 to 115995113 16 + TSS region transcription start site region 58347
Tssr58348 6 115995123 to 115995158 35 + TSS region transcription start site region 58348
Tssr58349 6 115995389 to 115995432 43 + TSS region transcription start site region 58349
Tmcc1 6 116018611 to 116193374 174763 - protein coding gene transmembrane and coiled coil domains 1
Tssr62548 6 116073037 to 116073077 40 - TSS region transcription start site region 62548
Tssr62549 6 116073121 to 116073148 27 - TSS region transcription start site region 62549
Tssr62550 6 116073149 to 116073163 14 - TSS region transcription start site region 62550
Tssr58350 6 116073829 to 116073832 3 + TSS region transcription start site region 58350
Tssr62551 6 116101811 to 116101825 14 - TSS region transcription start site region 62551
Tssr62552 6 116101829 to 116101838 9 - TSS region transcription start site region 62552
Tssr62553 6 116107504 to 116107551 47 - TSS region transcription start site region 62553
Tssr62554 6 116107561 to 116107577 16 - TSS region transcription start site region 62554
Gm20404 6 116107650 to 116127493 19843 + antisense lncRNA gene predicted gene 20404
Tssr62555 6 116107849 to 116107881 32 - TSS region transcription start site region 62555
Tssr62556 6 116109845 to 116109871 26 - TSS region transcription start site region 62556
Tssr62557 6 116131849 to 116131884 35 - TSS region transcription start site region 62557
Tssr62558 6 116133848 to 116133893 45 - TSS region transcription start site region 62558
Tssr62559 6 116133896 to 116133908 12 - TSS region transcription start site region 62559
Tssr58351 6 116137417 to 116137457 40 + TSS region transcription start site region 58351
D6Mit150.1 6 116154994 to 116155133 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 150.1
Bmd8 6 116155128 to 116155267 139 QTL bone mineral density 8
D6Mit150 6 116155128 to 116155267 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 150
Igf1sl1 6 116155267 to 52161713 -63993554 QTL IGF-1 serum levels 1
Tssr58352 6 116173628 to 116173635 7 + TSS region transcription start site region 58352
Gm8203 6 116173737 to 116174123 386 + pseudogene predicted pseudogene 8203
Tssr58353 6 116173785 to 116173804 19 + TSS region transcription start site region 58353
Tssr62560 6 116181517 to 116181521 4 - TSS region transcription start site region 62560
Cpgi17880 6 116192685 to 116194073 1388 CpG island CpG island 17880
Tssr62561 6 116193426 to 116193501 75 - TSS region transcription start site region 62561
Gm8213 6 116195418 to 116195858 440 - pseudogene predicted pseudogene 8213
9530062K07Rik 6 116199410 to 116207993 8583 - bidirectional promoter lncRNA gene RIKEN cDNA 9530062K07 gene
Cpgi17881 6 116207754 to 116208587 833 CpG island CpG island 17881
Washc2 6 116208027 to 116262671 54644 + protein coding gene WASH complex subunit 2`
Tssr58354 6 116208030 to 116208114 84 + TSS region transcription start site region 58354
Tssr58355 6 116208116 to 116208130 14 + TSS region transcription start site region 58355
Tssr58356 6 116208185 to 116208197 12 + TSS region transcription start site region 58356
Tssr58357 6 116226258 to 116226264 6 + TSS region transcription start site region 58357
Tssr58358 6 116226966 to 116226980 14 + TSS region transcription start site region 58358
Gm44103 6 116260434 to 116264095 3661 - unclassified gene predicted gene, 44103
Cpgi17882 6 116263899 to 116264636 737 CpG island CpG island 17882
Tssr62562 6 116264043 to 116264057 14 - TSS region transcription start site region 62562
Tssr58359 6 116264186 to 116264225 39 + TSS region transcription start site region 58359
Zfand4 6 116264222 to 116330302 66080 + protein coding gene zinc finger, AN1-type domain 4
Tssr58360 6 116264227 to 116264266 39 + TSS region transcription start site region 58360
Tssr58361 6 116264273 to 116264282 9 + TSS region transcription start site region 58361
Tssr58362 6 116286552 to 116286582 30 + TSS region transcription start site region 58362
Gm44957 6 116335233 to 116337949 2716 - unclassified non-coding RNA gene predicted gene 44957
Cpgi17883 6 116337721 to 116338537 816 CpG island CpG island 17883
Tssr58363 6 116337871 to 116337898 27 + TSS region transcription start site region 58363
Tssr58364 6 116337900 to 116337911 11 + TSS region transcription start site region 58364
Tssr58365 6 116337999 to 116338010 11 + TSS region transcription start site region 58365
Tssr58366 6 116338013 to 116338083 70 + TSS region transcription start site region 58366
March8 6 116338024 to 116409540 71516 + protein coding gene membrane-associated ring finger (C3HC4) 8
Tssr58367 6 116338300 to 116338332 32 + TSS region transcription start site region 58367
Tssr58368 6 116338373 to 116338392 19 + TSS region transcription start site region 58368
Tssr58369 6 116350902 to 116350937 35 + TSS region transcription start site region 58369
Tssr58370 6 116354869 to 116354870 1 + TSS region transcription start site region 58370
Tssr58371 6 116358956 to 116358973 17 + TSS region transcription start site region 58371
Gm23527 6 116371939 to 116372068 129 - snoRNA gene predicted gene, 23527
Gm44237 6 116389462 to 116390397 935 + unclassified gene predicted gene, 44237
Alox5 6 116410077 to 116461178 51101 - protein coding gene arachidonate 5-lipoxygenase
Tssr62563 6 116414044 to 116414053 9 - TSS region transcription start site region 62563
Gm38880 6 116420396 to 116448276 27880 + lncRNA gene predicted gene, 38880
Tssr62564 6 116423986 to 116423987 1 - TSS region transcription start site region 62564