Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:114691877-115811888

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg7 6 114643097 to 114860614 217517 + protein coding gene autophagy related 7
Cpgi17865 6 114738328 to 114738817 489 CpG island CpG island 17865
Gm19040 6 114738533 to 114741775 3242 + pseudogene predicted gene, 19040
Tssr58289 6 114748855 to 114748868 13 + TSS region transcription start site region 58289
Gm44332 6 114751530 to 114751962 432 + pseudogene predicted gene, 44332
Tssr58290 6 114759373 to 114759402 29 + TSS region transcription start site region 58290
Gm44331 6 114789390 to 114789777 387 + pseudogene predicted gene, 44331
Tssr62491 6 114859932 to 114859935 3 - TSS region transcription start site region 62491
Vgll4 6 114860628 to 114969994 109366 - protein coding gene vestigial like family member 4
Tssr62492 6 114864717 to 114864744 27 - TSS region transcription start site region 62492
Tssr62493 6 114875075 to 114875127 52 - TSS region transcription start site region 62493
Cpgi17866 6 114875083 to 114875308 225 CpG island CpG island 17866
Tssr1968 6 114880538 to 114880541 3 + TSS region transcription start site region 1968
A530060M17Rik 6 114881423 to 114884842 3419 unclassified gene RIKEN cDNA A530060M17 gene
Tssr62494 6 114921778 to 114921837 59 - TSS region transcription start site region 62494
Gm38876 6 114940300 to 114943633 3333 - lncRNA gene predicted gene, 38876
D6Ertd47e 6 114941563 to 114941773 210 DNA segment DNA segment, Chr 6, ERATO Doi 47, expressed
Cpgi17867 6 114968424 to 114970181 1757 CpG island CpG island 17867
Tssr62495 6 114969004 to 114969022 18 - TSS region transcription start site region 62495
Tssr62496 6 114969929 to 114969940 11 - TSS region transcription start site region 62496
Tssr62497 6 114969945 to 114969981 36 - TSS region transcription start site region 62497
Tssr62498 6 114969986 to 114970006 20 - TSS region transcription start site region 62498
Tamm41 6 115004381 to 115037876 33495 - protein coding gene TAM41 mitochondrial translocator assembly and maintenance homolog
Cpgi17868 6 115037327 to 115038045 718 CpG island CpG island 17868
Tssr62499 6 115037824 to 115037881 57 - TSS region transcription start site region 62499
Tssr62500 6 115039190 to 115039198 8 - TSS region transcription start site region 62500
Gm36190 6 115059336 to 115062422 3086 - lncRNA gene predicted gene, 36190
Gm24767 6 115099554 to 115099648 94 + miRNA gene predicted gene, 24767
Gm44010 6 115109339 to 115109669 330 + pseudogene predicted gene, 44010
Gm17733 6 115127600 to 115134835 7235 - bidirectional promoter lncRNA gene predicted gene, 17733
Cpgi17869 6 115134566 to 115135818 1252 CpG island CpG island 17869
Tssr58291 6 115134899 to 115134982 83 + TSS region transcription start site region 58291
Syn2 6 115134902 to 115282006 147104 + protein coding gene synapsin II
Tssr58292 6 115134990 to 115134993 3 + TSS region transcription start site region 58292
Tssr58293 6 115138514 to 115138518 4 + TSS region transcription start site region 58293
Gm18325 6 115159097 to 115159931 834 - pseudogene predicted gene, 18325
Tssr58294 6 115212906 to 115212915 9 + TSS region transcription start site region 58294
Gm17482 6 115227343 to 115259294 31951 + protein coding gene predicted gene, 17482
Tssr58295 6 115238967 to 115238978 11 + TSS region transcription start site region 58295
D6Mit366 6 115242853 to 115242977 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 366
Bhr7 6 115242853 to 115242977 124 QTL bronchial hyperresponsiveness 7
Radpf3 6 115242853 to 146429238 31186385 QTL radiation pulmonary fibrosis 3
Tssr58296 6 115244183 to 115244188 5 + TSS region transcription start site region 58296
Timp4 6 115245616 to 115252303 6687 - protein coding gene tissue inhibitor of metalloproteinase 4
Tssr62501 6 115251807 to 115251818 11 - TSS region transcription start site region 62501
Tssr62502 6 115251839 to 115251867 28 - TSS region transcription start site region 62502
Tssr62503 6 115251877 to 115251888 11 - TSS region transcription start site region 62503
Tssr62504 6 115252063 to 115252072 9 - TSS region transcription start site region 62504
Tssr62505 6 115252167 to 115252203 36 - TSS region transcription start site region 62505
Tssr62506 6 115252263 to 115252299 36 - TSS region transcription start site region 62506
Gm38877 6 115306225 to 115317088 10863 - lncRNA gene predicted gene, 38877
Tssr62507 6 115317066 to 115317082 16 - TSS region transcription start site region 62507
Tssr62508 6 115317105 to 115317114 9 - TSS region transcription start site region 62508
Gm38878 6 115320963 to 115325418 4455 - lncRNA gene predicted gene, 38878
Cpgi17870 6 115360753 to 115362239 1486 CpG island CpG island 17870
Tssr58297 6 115360854 to 115360881 27 + TSS region transcription start site region 58297
Tssr58298 6 115360890 to 115360912 22 + TSS region transcription start site region 58298
Tssr58299 6 115360950 to 115360962 12 + TSS region transcription start site region 58299
Berr6 6 115360951 to 115578340 217389 QTL berghei resistance locus 6
Pparg 6 115360951 to 115490399 129448 + protein coding gene peroxisome proliferator activated receptor gamma
Tssr58300 6 115360978 to 115360989 11 + TSS region transcription start site region 58300
Tssr58301 6 115361012 to 115361047 35 + TSS region transcription start site region 58301
Tssr58302 6 115361065 to 115361101 36 + TSS region transcription start site region 58302
Tssr58303 6 115361114 to 115361129 15 + TSS region transcription start site region 58303
Tssr58304 6 115361214 to 115361223 9 + TSS region transcription start site region 58304
Tssr58305 6 115361252 to 115361280 28 + TSS region transcription start site region 58305
Tssr58306 6 115361290 to 115361299 9 + TSS region transcription start site region 58306
Tssr62509 6 115362223 to 115362230 7 - TSS region transcription start site region 62509
Tssr58307 6 115362311 to 115362322 11 + TSS region transcription start site region 58307
Tssr58308 6 115362343 to 115362360 17 + TSS region transcription start site region 58308
Tssr58309 6 115399234 to 115399264 30 + TSS region transcription start site region 58309
Tssr58310 6 115421998 to 115422004 6 + TSS region transcription start site region 58310
Tssr58311 6 115422040 to 115422067 27 + TSS region transcription start site region 58311
Tssr58312 6 115422081 to 115422103 22 + TSS region transcription start site region 58312
Tssr58313 6 115422121 to 115422134 13 + TSS region transcription start site region 58313
Tssr58314 6 115441523 to 115441534 11 + TSS region transcription start site region 58314
Gm44079 6 115451815 to 115464990 13175 - antisense lncRNA gene predicted gene, 44079
D6Oda17 6 115465109 to 115465296 187 DNA segment DNA segment, Chr 6, Sen-ichi Oda 17
Tssr62510 6 115484485 to 115484488 3 - TSS region transcription start site region 62510
Tssr62511 6 115488851 to 115488861 10 - TSS region transcription start site region 62511
Gm36301 6 115505886 to 115519525 13639 - lncRNA gene predicted gene, 36301
Tssr1969 6 115522104 to 115522106 2 + TSS region transcription start site region 1969
Gm36355 6 115529131 to 115536900 7769 - lincRNA gene predicted gene, 36355
Tssr62512 6 115536969 to 115536998 29 - TSS region transcription start site region 62512
Cpgi17871 6 115544362 to 115545096 734 CpG island CpG island 17871
Tssr58315 6 115544672 to 115544712 40 + TSS region transcription start site region 58315
Tsen2 6 115544703 to 115578340 33637 + protein coding gene tRNA splicing endonuclease subunit 2
Tssr58316 6 115581098 to 115581109 11 + TSS region transcription start site region 58316
Mkrn2os 6 115583547 to 115592576 9029 - protein coding gene makorin, ring finger protein 2, opposite strand
Tssr62513 6 115592493 to 115592503 10 - TSS region transcription start site region 62513
Tssr62514 6 115592510 to 115592529 19 - TSS region transcription start site region 62514
Tssr62515 6 115592530 to 115592537 7 - TSS region transcription start site region 62515
Tssr62516 6 115592543 to 115592570 27 - TSS region transcription start site region 62516
Tssr62517 6 115592571 to 115592599 28 - TSS region transcription start site region 62517
Cpgi17872 6 115601704 to 115602445 741 CpG island CpG island 17872
Tssr58317 6 115601907 to 115601940 33 + TSS region transcription start site region 58317
Mkrn2 6 115601938 to 115618670 16732 + protein coding gene makorin, ring finger protein, 2
Tssr58318 6 115601951 to 115601979 28 + TSS region transcription start site region 58318
Gm44157 6 115608170 to 115608579 409 + unclassified gene predicted gene, 44157
Raf1 6 115618573 to 115676635 58062 - protein coding gene v-raf-leukemia viral oncogene 1
Gm14335 6 115638250 to 115639059 809 - pseudogene predicted gene 14335
Tssr62518 6 115639184 to 115639206 22 - TSS region transcription start site region 62518
Tssr62519 6 115644527 to 115644558 31 - TSS region transcription start site region 62519
Tssr62520 6 115653995 to 115654002 7 - TSS region transcription start site region 62520
Tssr62521 6 115661731 to 115661749 18 - TSS region transcription start site region 62521
Tssr58319 6 115666952 to 115666970 18 + TSS region transcription start site region 58319
Cpgi17873 6 115675680 to 115677067 1387 CpG island CpG island 17873
Tssr62522 6 115675871 to 115675887 16 - TSS region transcription start site region 62522
Tssr58320 6 115675944 to 115675956 12 + TSS region transcription start site region 58320
D830050J10Rik 6 115675968 to 115677780 1812 + bidirectional promoter lncRNA gene RIKEN cDNA D830050J10 gene
Tssr58321 6 115675983 to 115676004 21 + TSS region transcription start site region 58321
Tssr62523 6 115676472 to 115676578 106 - TSS region transcription start site region 62523
Tssr62524 6 115676601 to 115676618 17 - TSS region transcription start site region 62524
Tssr62525 6 115676623 to 115676642 19 - TSS region transcription start site region 62525
Tssr58322 6 115676714 to 115676754 40 + TSS region transcription start site region 58322
Tssr62526 6 115685450 to 115685498 48 - TSS region transcription start site region 62526
Tssr1970 6 115687862 to 115687864 2 + TSS region transcription start site region 1970
Gm38879 6 115701150 to 115705539 4389 + lncRNA gene predicted gene, 38879
Lith6 6 115717516 to 115717715 199 QTL lithogenic gene 6
D6Mit62a 6 115717516 to 115717715 199 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 62a
Bhr5 6 115717516 to 132601187 16883671 QTL bronchial hyperresponsiveness 5
D6Mit62b 6 115717516 to 115717805 289 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 62b
Gm24008 6 115723695 to 115723832 137 - snoRNA gene predicted gene, 24008
Tmem40 6 115729131 to 115762410 33279 - protein coding gene transmembrane protein 40
Tssr62527 6 115731077 to 115731090 13 - TSS region transcription start site region 62527
Tssr62528 6 115731098 to 115731115 17 - TSS region transcription start site region 62528
Tssr58323 6 115731962 to 115731976 14 + TSS region transcription start site region 58323
Gm27853 6 115750366 to 115750615 249 - unclassified non-coding RNA gene predicted gene, 27853
Tssr62529 6 115758974 to 115759000 26 - TSS region transcription start site region 62529
Tssr62530 6 115759004 to 115759020 16 - TSS region transcription start site region 62530
Tssr62531 6 115759021 to 115759036 15 - TSS region transcription start site region 62531
Tssr1971 6 115759726 to 115759732 6 + TSS region transcription start site region 1971
Tssr58324 6 115762254 to 115762298 44 + TSS region transcription start site region 58324
Tssr62532 6 115762322 to 115762344 22 - TSS region transcription start site region 62532
Tssr62533 6 115762346 to 115762380 34 - TSS region transcription start site region 62533
Gm44180 6 115769920 to 115770327 407 - pseudogene predicted gene, 44180
Cand2 6 115774557 to 115805555 30998 + protein coding gene cullin-associated and neddylation-dissociated 2 (putative)
Cpgi17874 6 115774559 to 115774724 165 CpG island CpG island 17874
Tssr58325 6 115774564 to 115774609 45 + TSS region transcription start site region 58325
Mir7660 6 115775657 to 115775719 62 + miRNA gene microRNA 7660
Cpgi17875 6 115792065 to 115792654 589 CpG island CpG island 17875
Tssr1972 6 115792928 to 115792967 39 + TSS region transcription start site region 1972
Cpgi17876 6 115792935 to 115793197 262 CpG island CpG island 17876
Rpl32 6 115805514 to 115808743 3229 - protein coding gene ribosomal protein L32
Snora7a 6 115807975 to 115808103 128 - snoRNA gene small nucleolar RNA, H/ACA box 7A
Cpgi17877 6 115808031 to 115808838 807 CpG island CpG island 17877
Tssr62534 6 115808736 to 115808754 18 - TSS region transcription start site region 62534
Tssr62535 6 115808765 to 115808779 14 - TSS region transcription start site region 62535
Efcab12 6 115810729 to 115838412 27683 - protein coding gene EF-hand calcium binding domain 12