Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:114305628-115524994

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pnhdlc1 6 105564822 to 114368849 8804027 QTL plasma non-HDL cholesterol 1
Slc6a1 6 114282635 to 114317525 34890 + protein coding gene solute carrier family 6 (neurotransmitter transporter, GABA), member 1
Tssr58271 6 114306302 to 114306306 4 + TSS region transcription start site region 58271
Tssr58272 6 114306863 to 114306867 4 + TSS region transcription start site region 58272
Cpgi17862 6 114307743 to 114307935 192 CpG island CpG island 17862
Tssr58273 6 114310184 to 114310194 10 + TSS region transcription start site region 58273
Tssr58274 6 114315409 to 114315426 17 + TSS region transcription start site region 58274
Tssr1966 6 114315665 to 114315674 9 + TSS region transcription start site region 1966
Tssr58275 6 114315680 to 114315689 9 + TSS region transcription start site region 58275
Tssr58276 6 114315727 to 114315737 10 + TSS region transcription start site region 58276
Tssr1967 6 114316247 to 114316256 9 + TSS region transcription start site region 1967
Tssr58277 6 114316645 to 114316664 19 + TSS region transcription start site region 58277
Gm38875 6 114356142 to 114397735 41593 - lncRNA gene predicted gene, 38875
D6Oda26 6 114367221 to 114367406 185 DNA segment DNA segment, Chr 6, Sen-ichi Oda 26
Mvwf2 6 114368732 to 145656013 31287281 QTL modifier of von Willebrand factor 2
D6Mit63 6 114368732 to 114368849 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 63
Cpgi17863 6 114397387 to 114398629 1242 CpG island CpG island 17863
Tssr62486 6 114397755 to 114397777 22 - TSS region transcription start site region 62486
Hrh1 6 114397936 to 114483296 85360 + protein coding gene histamine receptor H1
Tssr62487 6 114411458 to 114411461 3 - TSS region transcription start site region 62487
Tssr62488 6 114464316 to 114464354 38 - TSS region transcription start site region 62488
Tssr62489 6 114474995 to 114474996 1 - TSS region transcription start site region 62489
Cpgi17864 6 114642924 to 114643420 496 CpG island CpG island 17864
Tssr58278 6 114643094 to 114643105 11 + TSS region transcription start site region 58278
Atg7 6 114643097 to 114860614 217517 + protein coding gene autophagy related 7
Tssr58279 6 114643106 to 114643169 63 + TSS region transcription start site region 58279
Tssr58280 6 114643176 to 114643187 11 + TSS region transcription start site region 58280
Tssr58281 6 114643194 to 114643203 9 + TSS region transcription start site region 58281
Tssr58282 6 114644829 to 114644832 3 + TSS region transcription start site region 58282
D6Oda27 6 114646533 to 114646707 174 DNA segment DNA segment, Chr 6, Sen-ichi Oda 27
Tssr58283 6 114648811 to 114648889 78 + TSS region transcription start site region 58283
Tssr58284 6 114648906 to 114648920 14 + TSS region transcription start site region 58284
Tssr58285 6 114648927 to 114648933 6 + TSS region transcription start site region 58285
Tssr58286 6 114652402 to 114652418 16 + TSS region transcription start site region 58286
Tssr58287 6 114654815 to 114654825 10 + TSS region transcription start site region 58287
Tssr62490 6 114659194 to 114659196 2 - TSS region transcription start site region 62490
Tssr58288 6 114688770 to 114688780 10 + TSS region transcription start site region 58288
Cpgi17865 6 114738328 to 114738817 489 CpG island CpG island 17865
Gm19040 6 114738533 to 114741775 3242 + pseudogene predicted gene, 19040
Tssr58289 6 114748855 to 114748868 13 + TSS region transcription start site region 58289
Gm44332 6 114751530 to 114751962 432 + pseudogene predicted gene, 44332
Tssr58290 6 114759373 to 114759402 29 + TSS region transcription start site region 58290
Gm44331 6 114789390 to 114789777 387 + pseudogene predicted gene, 44331
Tssr62491 6 114859932 to 114859935 3 - TSS region transcription start site region 62491
Vgll4 6 114860628 to 114969994 109366 - protein coding gene vestigial like family member 4
Tssr62492 6 114864717 to 114864744 27 - TSS region transcription start site region 62492
Tssr62493 6 114875075 to 114875127 52 - TSS region transcription start site region 62493
Cpgi17866 6 114875083 to 114875308 225 CpG island CpG island 17866
Tssr1968 6 114880538 to 114880541 3 + TSS region transcription start site region 1968
A530060M17Rik 6 114881423 to 114884842 3419 unclassified gene RIKEN cDNA A530060M17 gene
Tssr62494 6 114921778 to 114921837 59 - TSS region transcription start site region 62494
Gm38876 6 114940300 to 114943633 3333 - lncRNA gene predicted gene, 38876
D6Ertd47e 6 114941563 to 114941773 210 DNA segment DNA segment, Chr 6, ERATO Doi 47, expressed
Cpgi17867 6 114968424 to 114970181 1757 CpG island CpG island 17867
Tssr62495 6 114969004 to 114969022 18 - TSS region transcription start site region 62495
Tssr62496 6 114969929 to 114969940 11 - TSS region transcription start site region 62496
Tssr62497 6 114969945 to 114969981 36 - TSS region transcription start site region 62497
Tssr62498 6 114969986 to 114970006 20 - TSS region transcription start site region 62498
Tamm41 6 115004381 to 115037876 33495 - protein coding gene TAM41 mitochondrial translocator assembly and maintenance homolog
Cpgi17868 6 115037327 to 115038045 718 CpG island CpG island 17868
Tssr62499 6 115037824 to 115037881 57 - TSS region transcription start site region 62499
Tssr62500 6 115039190 to 115039198 8 - TSS region transcription start site region 62500
Gm36190 6 115059336 to 115062422 3086 - lncRNA gene predicted gene, 36190
Gm24767 6 115099554 to 115099648 94 + miRNA gene predicted gene, 24767
Gm44010 6 115109339 to 115109669 330 + pseudogene predicted gene, 44010
Gm17733 6 115127600 to 115134835 7235 - bidirectional promoter lncRNA gene predicted gene, 17733
Cpgi17869 6 115134566 to 115135818 1252 CpG island CpG island 17869
Tssr58291 6 115134899 to 115134982 83 + TSS region transcription start site region 58291
Syn2 6 115134902 to 115282006 147104 + protein coding gene synapsin II
Tssr58292 6 115134990 to 115134993 3 + TSS region transcription start site region 58292
Tssr58293 6 115138514 to 115138518 4 + TSS region transcription start site region 58293
Gm18325 6 115159097 to 115159931 834 - pseudogene predicted gene, 18325
Tssr58294 6 115212906 to 115212915 9 + TSS region transcription start site region 58294
Gm17482 6 115227343 to 115259294 31951 + protein coding gene predicted gene, 17482
Tssr58295 6 115238967 to 115238978 11 + TSS region transcription start site region 58295
Bhr7 6 115242853 to 115242977 124 QTL bronchial hyperresponsiveness 7
D6Mit366 6 115242853 to 115242977 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 366
Radpf3 6 115242853 to 146429238 31186385 QTL radiation pulmonary fibrosis 3
Tssr58296 6 115244183 to 115244188 5 + TSS region transcription start site region 58296
Timp4 6 115245616 to 115252303 6687 - protein coding gene tissue inhibitor of metalloproteinase 4
Tssr62501 6 115251807 to 115251818 11 - TSS region transcription start site region 62501
Tssr62502 6 115251839 to 115251867 28 - TSS region transcription start site region 62502
Tssr62503 6 115251877 to 115251888 11 - TSS region transcription start site region 62503
Tssr62504 6 115252063 to 115252072 9 - TSS region transcription start site region 62504
Tssr62505 6 115252167 to 115252203 36 - TSS region transcription start site region 62505
Tssr62506 6 115252263 to 115252299 36 - TSS region transcription start site region 62506
Gm38877 6 115306225 to 115317088 10863 - lncRNA gene predicted gene, 38877
Tssr62507 6 115317066 to 115317082 16 - TSS region transcription start site region 62507
Tssr62508 6 115317105 to 115317114 9 - TSS region transcription start site region 62508
Gm38878 6 115320963 to 115325418 4455 - lncRNA gene predicted gene, 38878
Cpgi17870 6 115360753 to 115362239 1486 CpG island CpG island 17870
Tssr58297 6 115360854 to 115360881 27 + TSS region transcription start site region 58297
Tssr58298 6 115360890 to 115360912 22 + TSS region transcription start site region 58298
Tssr58299 6 115360950 to 115360962 12 + TSS region transcription start site region 58299
Berr6 6 115360951 to 115578340 217389 QTL berghei resistance locus 6
Pparg 6 115360951 to 115490399 129448 + protein coding gene peroxisome proliferator activated receptor gamma
Tssr58300 6 115360978 to 115360989 11 + TSS region transcription start site region 58300
Tssr58301 6 115361012 to 115361047 35 + TSS region transcription start site region 58301
Tssr58302 6 115361065 to 115361101 36 + TSS region transcription start site region 58302
Tssr58303 6 115361114 to 115361129 15 + TSS region transcription start site region 58303
Tssr58304 6 115361214 to 115361223 9 + TSS region transcription start site region 58304
Tssr58305 6 115361252 to 115361280 28 + TSS region transcription start site region 58305
Tssr58306 6 115361290 to 115361299 9 + TSS region transcription start site region 58306
Tssr62509 6 115362223 to 115362230 7 - TSS region transcription start site region 62509
Tssr58307 6 115362311 to 115362322 11 + TSS region transcription start site region 58307
Tssr58308 6 115362343 to 115362360 17 + TSS region transcription start site region 58308
Tssr58309 6 115399234 to 115399264 30 + TSS region transcription start site region 58309
Tssr58310 6 115421998 to 115422004 6 + TSS region transcription start site region 58310
Tssr58311 6 115422040 to 115422067 27 + TSS region transcription start site region 58311
Tssr58312 6 115422081 to 115422103 22 + TSS region transcription start site region 58312
Tssr58313 6 115422121 to 115422134 13 + TSS region transcription start site region 58313
Tssr58314 6 115441523 to 115441534 11 + TSS region transcription start site region 58314
Gm44079 6 115451815 to 115464990 13175 - antisense lncRNA gene predicted gene, 44079
D6Oda17 6 115465109 to 115465296 187 DNA segment DNA segment, Chr 6, Sen-ichi Oda 17
Tssr62510 6 115484485 to 115484488 3 - TSS region transcription start site region 62510
Tssr62511 6 115488851 to 115488861 10 - TSS region transcription start site region 62511
Gm36301 6 115505886 to 115519525 13639 - lncRNA gene predicted gene, 36301
Tssr1969 6 115522104 to 115522106 2 + TSS region transcription start site region 1969