Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:114249829-115039832

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
ssl 6 100057020 to 114282207 14225187 heritable phenotypic marker small swaying lethal
Pnhdlc1 6 105564822 to 114368849 8804027 QTL plasma non-HDL cholesterol 1
Slc6a11 6 114131241 to 114249886 118645 + protein coding gene solute carrier family 6 (neurotransmitter transporter, GABA), member 11
Gm46972 6 114272429 to 114277114 4685 + lncRNA gene predicted gene, 46972
D6Mit55 6 114282098 to 114282207 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 55
Cpgi17861 6 114282482 to 114283256 774 CpG island CpG island 17861
Slc6a1 6 114282635 to 114317525 34890 + protein coding gene solute carrier family 6 (neurotransmitter transporter, GABA), member 1
Tssr58268 6 114282757 to 114282817 60 + TSS region transcription start site region 58268
Tssr58269 6 114302150 to 114302156 6 + TSS region transcription start site region 58269
Tssr58270 6 114302591 to 114302605 14 + TSS region transcription start site region 58270
Tssr58271 6 114306302 to 114306306 4 + TSS region transcription start site region 58271
Tssr58272 6 114306863 to 114306867 4 + TSS region transcription start site region 58272
Cpgi17862 6 114307743 to 114307935 192 CpG island CpG island 17862
Tssr58273 6 114310184 to 114310194 10 + TSS region transcription start site region 58273
Tssr58274 6 114315409 to 114315426 17 + TSS region transcription start site region 58274
Tssr1966 6 114315665 to 114315674 9 + TSS region transcription start site region 1966
Tssr58275 6 114315680 to 114315689 9 + TSS region transcription start site region 58275
Tssr58276 6 114315727 to 114315737 10 + TSS region transcription start site region 58276
Tssr1967 6 114316247 to 114316256 9 + TSS region transcription start site region 1967
Tssr58277 6 114316645 to 114316664 19 + TSS region transcription start site region 58277
Gm38875 6 114356142 to 114397735 41593 - lncRNA gene predicted gene, 38875
D6Oda26 6 114367221 to 114367406 185 DNA segment DNA segment, Chr 6, Sen-ichi Oda 26
D6Mit63 6 114368732 to 114368849 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 63
Mvwf2 6 114368732 to 145656013 31287281 QTL modifier of von Willebrand factor 2
Cpgi17863 6 114397387 to 114398629 1242 CpG island CpG island 17863
Tssr62486 6 114397755 to 114397777 22 - TSS region transcription start site region 62486
Hrh1 6 114397936 to 114483296 85360 + protein coding gene histamine receptor H1
Tssr62487 6 114411458 to 114411461 3 - TSS region transcription start site region 62487
Tssr62488 6 114464316 to 114464354 38 - TSS region transcription start site region 62488
Tssr62489 6 114474995 to 114474996 1 - TSS region transcription start site region 62489
Cpgi17864 6 114642924 to 114643420 496 CpG island CpG island 17864
Tssr58278 6 114643094 to 114643105 11 + TSS region transcription start site region 58278
Atg7 6 114643097 to 114860614 217517 + protein coding gene autophagy related 7
Tssr58279 6 114643106 to 114643169 63 + TSS region transcription start site region 58279
Tssr58280 6 114643176 to 114643187 11 + TSS region transcription start site region 58280
Tssr58281 6 114643194 to 114643203 9 + TSS region transcription start site region 58281
Tssr58282 6 114644829 to 114644832 3 + TSS region transcription start site region 58282
D6Oda27 6 114646533 to 114646707 174 DNA segment DNA segment, Chr 6, Sen-ichi Oda 27
Tssr58283 6 114648811 to 114648889 78 + TSS region transcription start site region 58283
Tssr58284 6 114648906 to 114648920 14 + TSS region transcription start site region 58284
Tssr58285 6 114648927 to 114648933 6 + TSS region transcription start site region 58285
Tssr58286 6 114652402 to 114652418 16 + TSS region transcription start site region 58286
Tssr58287 6 114654815 to 114654825 10 + TSS region transcription start site region 58287
Tssr62490 6 114659194 to 114659196 2 - TSS region transcription start site region 62490
Tssr58288 6 114688770 to 114688780 10 + TSS region transcription start site region 58288
Cpgi17865 6 114738328 to 114738817 489 CpG island CpG island 17865
Gm19040 6 114738533 to 114741775 3242 + pseudogene predicted gene, 19040
Tssr58289 6 114748855 to 114748868 13 + TSS region transcription start site region 58289
Gm44332 6 114751530 to 114751962 432 + pseudogene predicted gene, 44332
Tssr58290 6 114759373 to 114759402 29 + TSS region transcription start site region 58290
Gm44331 6 114789390 to 114789777 387 + pseudogene predicted gene, 44331
Tssr62491 6 114859932 to 114859935 3 - TSS region transcription start site region 62491
Vgll4 6 114860628 to 114969994 109366 - protein coding gene vestigial like family member 4
Tssr62492 6 114864717 to 114864744 27 - TSS region transcription start site region 62492
Tssr62493 6 114875075 to 114875127 52 - TSS region transcription start site region 62493
Cpgi17866 6 114875083 to 114875308 225 CpG island CpG island 17866
Tssr1968 6 114880538 to 114880541 3 + TSS region transcription start site region 1968
A530060M17Rik 6 114881423 to 114884842 3419 unclassified gene RIKEN cDNA A530060M17 gene
Tssr62494 6 114921778 to 114921837 59 - TSS region transcription start site region 62494
Gm38876 6 114940300 to 114943633 3333 - lncRNA gene predicted gene, 38876
D6Ertd47e 6 114941563 to 114941773 210 DNA segment DNA segment, Chr 6, ERATO Doi 47, expressed
Cpgi17867 6 114968424 to 114970181 1757 CpG island CpG island 17867
Tssr62495 6 114969004 to 114969022 18 - TSS region transcription start site region 62495
Tssr62496 6 114969929 to 114969940 11 - TSS region transcription start site region 62496
Tssr62497 6 114969945 to 114969981 36 - TSS region transcription start site region 62497
Tssr62498 6 114969986 to 114970006 20 - TSS region transcription start site region 62498
Tamm41 6 115004381 to 115037876 33495 - protein coding gene TAM41 mitochondrial translocator assembly and maintenance homolog
Cpgi17868 6 115037327 to 115038045 718 CpG island CpG island 17868
Tssr62499 6 115037824 to 115037881 57 - TSS region transcription start site region 62499
Tssr62500 6 115039190 to 115039198 8 - TSS region transcription start site region 62500