Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:11383337-15445996

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr59821 6 11493059 to 11493062 3 - TSS region transcription start site region 59821
D6Mit87 6 11796164 to 11796295 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 87
Ndufa4 6 11900373 to 11907446 7073 - protein coding gene Ndufa4, mitochondrial complex associated
Cpgi17160 6 11907173 to 11908092 919 CpG island CpG island 17160
Tssr59822 6 11907419 to 11907484 65 - TSS region transcription start site region 59822
Tssr54938 6 11907751 to 11907793 42 + TSS region transcription start site region 54938
Phf14 6 11907809 to 12081205 173396 + protein coding gene PHD finger protein 14
Tssr54939 6 11907824 to 11907902 78 + TSS region transcription start site region 54939
Cpgi17161 6 11925665 to 11926658 993 CpG island CpG island 17161
Tssr54940 6 11925869 to 11925941 72 + TSS region transcription start site region 54940
Tssr54941 6 11925958 to 11925969 11 + TSS region transcription start site region 54941
Tssr54942 6 11926128 to 11926195 67 + TSS region transcription start site region 54942
Tssr54943 6 11926758 to 11926790 32 + TSS region transcription start site region 54943
Tssr54944 6 11933380 to 11933405 25 + TSS region transcription start site region 54944
Tssr54945 6 11935188 to 11935189 1 + TSS region transcription start site region 54945
Tssr59823 6 11998347 to 11998351 4 - TSS region transcription start site region 59823
Tssr54946 6 12019831 to 12019834 3 + TSS region transcription start site region 54946
Tssr54947 6 12041374 to 12041395 21 + TSS region transcription start site region 54947
Gm6578 6 12099518 to 12109580 10062 - pseudogene predicted gene 6578
Tssr54948 6 12128561 to 12128563 2 + TSS region transcription start site region 54948
Gm32222 6 12128626 to 12128923 297 + pseudogene predicted gene, 32222
Gm35961 6 12167667 to 12212559 44892 + lncRNA gene predicted gene, 35961
D6Mit234 6 12254797 to 12254946 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 234
Thsd7a 6 12311608 to 12749253 437645 - protein coding gene thrombospondin, type I, domain containing 7A
Tssr59824 6 12315263 to 12315280 17 - TSS region transcription start site region 59824
Gm38583 6 12435014 to 12478332 43318 + lncRNA gene predicted gene, 38583
Cpgi17162 6 12555189 to 12555592 403 CpG island CpG island 17162
Gm16123 6 12565488 to 12566914 1426 + pseudogene predicted gene 16123
D6Mit169 6 12589175 to 12589373 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 169
Gm44129 6 12608996 to 12658956 49960 + lincRNA gene predicted gene, 44129
Tssr59825 6 12706778 to 12706780 2 - TSS region transcription start site region 59825
Tssr59826 6 12724614 to 12724618 4 - TSS region transcription start site region 59826
Tssr59827 6 12726180 to 12726199 19 - TSS region transcription start site region 59827
n-R5s160 6 12742899 to 12743018 119 + rRNA gene nuclear encoded rRNA 5S 160
Cpgi17163 6 12748690 to 12749551 861 CpG island CpG island 17163
Tssr59828 6 12749070 to 12749079 9 - TSS region transcription start site region 59828
Tssr59829 6 12749084 to 12749095 11 - TSS region transcription start site region 59829
Tssr59830 6 12749153 to 12749167 14 - TSS region transcription start site region 59830
Tssr1780 6 12749185 to 12749190 5 - TSS region transcription start site region 1780
Tssr59831 6 12749193 to 12749209 16 - TSS region transcription start site region 59831
Tssr59832 6 12749435 to 12749440 5 - TSS region transcription start site region 59832
Tssr59833 6 12786654 to 12786666 12 - TSS region transcription start site region 59833
Gm18221 6 12809066 to 12874600 65534 - pseudogene predicted gene, 18221
Gm15529 6 12857397 to 12858390 993 + pseudogene predicted gene 15529
Tssr54949 6 12911081 to 12911085 4 + TSS region transcription start site region 54949
Gm44472 6 12917525 to 12918467 942 + unclassified gene predicted gene, 44472
Gm5300 6 13055595 to 13056597 1002 - pseudogene predicted gene 5300
Cpgi17164 6 13069585 to 13070247 662 CpG island CpG island 17164
Tssr54950 6 13069750 to 13069755 5 + TSS region transcription start site region 54950
Tssr54951 6 13069758 to 13069866 108 + TSS region transcription start site region 54951
Tmem106b 6 13069759 to 13089269 19510 + protein coding gene transmembrane protein 106B
Tssr54952 6 13069879 to 13069895 16 + TSS region transcription start site region 54952
Gm24985 6 13111299 to 13111427 128 + snoRNA gene predicted gene, 24985
Vwde 6 13185610 to 13224965 39355 - protein coding gene von Willebrand factor D and EGF domains
Gm725 6 13263695 to 13264606 911 + protein coding gene predicted gene 725
D6Mit83 6 13400268 to 13400420 152 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 83
Tssr54953 6 13413334 to 13413361 27 + TSS region transcription start site region 54953
1700016P04Rik 6 13413337 to 13415996 2659 + lincRNA gene RIKEN cDNA 1700016P04 gene
Tssr54954 6 13413365 to 13413369 4 + TSS region transcription start site region 54954
Gm2796 6 13461462 to 13461957 495 - pseudogene predicted gene 2796
Tssr59834 6 13461995 to 13461996 1 - TSS region transcription start site region 59834
Gm25737 6 13549506 to 13549612 106 + snRNA gene predicted gene, 25737
Tmem168 6 13580687 to 13608100 27413 - protein coding gene transmembrane protein 168
Cpgi17165 6 13607470 to 13608578 1108 CpG island CpG island 17165
Tssr59835 6 13608011 to 13608050 39 - TSS region transcription start site region 59835
Bmt2 6 13625675 to 13677966 52291 - protein coding gene base methyltransferase of 25S rRNA 2
Tssr59836 6 13650969 to 13650988 19 - TSS region transcription start site region 59836
Tssr59837 6 13654130 to 13654157 27 - TSS region transcription start site region 59837
Cpgi17166 6 13677056 to 13678363 1307 CpG island CpG island 17166
Tssr59838 6 13677890 to 13677895 5 - TSS region transcription start site region 59838
Tssr59839 6 13677907 to 13677923 16 - TSS region transcription start site region 59839
Tssr59840 6 13677930 to 13677974 44 - TSS region transcription start site region 59840
Tssr54955 6 13682626 to 13682632 6 + TSS region transcription start site region 54955
Gm40354 6 13749475 to 13776712 27237 + lncRNA gene predicted gene, 40354
Gm38766 6 13824157 to 13832041 7884 - lncRNA gene predicted gene, 38766
Tssr59841 6 13829017 to 13829020 3 - TSS region transcription start site region 59841
Gpr85 6 13834454 to 13839937 5483 - protein coding gene G protein-coupled receptor 85
Tssr59842 6 13838097 to 13838107 10 - TSS region transcription start site region 59842
Tssr59843 6 13838432 to 13838442 10 - TSS region transcription start site region 59843
Cpgi17167 6 13838497 to 13839180 683 CpG island CpG island 17167
Tssr59844 6 13838574 to 13838618 44 - TSS region transcription start site region 59844
Tssr59845 6 13838652 to 13838689 37 - TSS region transcription start site region 59845
Tssr54956 6 13838679 to 13838701 22 + TSS region transcription start site region 54956
Tssr54957 6 13838728 to 13838742 14 + TSS region transcription start site region 54957
Tssr59846 6 13839180 to 13839210 30 - TSS region transcription start site region 59846
Tssr59847 6 13839318 to 13839340 22 - TSS region transcription start site region 59847
Tssr59848 6 13839424 to 13839438 14 - TSS region transcription start site region 59848
Tssr59849 6 13839486 to 13839510 24 - TSS region transcription start site region 59849
Tssr59850 6 13839519 to 13839534 15 - TSS region transcription start site region 59850
Tssr59851 6 13839895 to 13839908 13 - TSS region transcription start site region 59851
Tssr59852 6 13839916 to 13839941 25 - TSS region transcription start site region 59852
2610001J05Rik 6 13869074 to 13871483 2409 - protein coding gene RIKEN cDNA 2610001J05 gene
Tssr59853 6 13871073 to 13871129 56 - TSS region transcription start site region 59853
Tssr59854 6 13871167 to 13871176 9 - TSS region transcription start site region 59854
Tssr59855 6 13871459 to 13871471 12 - TSS region transcription start site region 59855
Tssr59856 6 13871477 to 13871487 10 - TSS region transcription start site region 59856
Tssr54958 6 13871517 to 13871562 45 + TSS region transcription start site region 54958
1110019D14Rik 6 13871569 to 13896421 24852 + lincRNA gene RIKEN cDNA 1110019D14 gene
Tssr59857 6 13871687 to 13871707 20 - TSS region transcription start site region 59857
Tssr59858 6 13872284 to 13872298 14 - TSS region transcription start site region 59858
Tssr59859 6 13872305 to 13872316 11 - TSS region transcription start site region 59859
Tssr59860 6 13872319 to 13872345 26 - TSS region transcription start site region 59860
Gm44412 6 13913155 to 13913448 293 - pseudogene predicted gene, 44412
Gm44411 6 14006007 to 14006355 348 + pseudogene predicted gene, 44411
Gm38767 6 14018525 to 14045525 27000 + lncRNA gene predicted gene, 38767
Gm19252 6 14081331 to 14081635 304 - pseudogene predicted gene, 19252
Gm23760 6 14113316 to 14113431 115 + snoRNA gene predicted gene, 23760
Gm8820 6 14389481 to 14390044 563 - pseudogene predicted gene 8820
Gm23013 6 14457045 to 14457150 105 - snRNA gene predicted gene, 23013
Tssr54959 6 14512588 to 14512601 13 + TSS region transcription start site region 54959
Gm44446 6 14570771 to 14571025 254 - pseudogene predicted gene, 44446
Tssr54960 6 14608327 to 14608350 23 + TSS region transcription start site region 54960
Tssr54961 6 14608423 to 14608432 9 + TSS region transcription start site region 54961
Gm38768 6 14608451 to 14611644 3193 + lncRNA gene predicted gene, 38768
Ppp1r3a 6 14713977 to 14755274 41297 - protein coding gene protein phosphatase 1, regulatory subunit 3A
Tssr59861 6 14715184 to 14715189 5 - TSS region transcription start site region 59861
Tssr1781 6 14748056 to 14748059 3 - TSS region transcription start site region 1781
Tssr59862 6 14754590 to 14754600 10 - TSS region transcription start site region 59862
Tssr59863 6 14754716 to 14754729 13 - TSS region transcription start site region 59863
Tssr59864 6 14754738 to 14754751 13 - TSS region transcription start site region 59864
Tssr59865 6 14755070 to 14755081 11 - TSS region transcription start site region 59865
Tssr59866 6 14755086 to 14755095 9 - TSS region transcription start site region 59866
Tssr59867 6 14755096 to 14755134 38 - TSS region transcription start site region 59867
Tssr59868 6 14755136 to 14755146 10 - TSS region transcription start site region 59868
Tssr59869 6 14755169 to 14755193 24 - TSS region transcription start site region 59869
Tssr59870 6 14755250 to 14755286 36 - TSS region transcription start site region 59870
Tssr59871 6 14755300 to 14755317 17 - TSS region transcription start site region 59871
Tssr1782 6 14755327 to 14755332 5 - TSS region transcription start site region 1782
Tssr59872 6 14757596 to 14757615 19 - TSS region transcription start site region 59872
Gm36300 6 14784676 to 14819205 34529 - lncRNA gene predicted gene, 36300
Cpgi17168 6 14900597 to 14902053 1456 CpG island CpG island 17168
Tssr54962 6 14901212 to 14901226 14 + TSS region transcription start site region 54962
Tssr54963 6 14901250 to 14901277 27 + TSS region transcription start site region 54963
Tssr54964 6 14901287 to 14901342 55 + TSS region transcription start site region 54964
Tssr54965 6 14901344 to 14901364 20 + TSS region transcription start site region 54965
Foxp2 6 14901349 to 15441977 540628 + protein coding gene forkhead box P2
Tssr54966 6 14901377 to 14901396 19 + TSS region transcription start site region 54966
Tssr54967 6 14901403 to 14901422 19 + TSS region transcription start site region 54967
Tssr54968 6 14901440 to 14901497 57 + TSS region transcription start site region 54968
Tssr54969 6 14901547 to 14901571 24 + TSS region transcription start site region 54969
Tssr54970 6 14901605 to 14901614 9 + TSS region transcription start site region 54970
Tssr54971 6 14903484 to 14903504 20 + TSS region transcription start site region 54971
Gm2845 6 14948515 to 14949138 623 + pseudogene predicted gene 2845
D6Mit265 6 15021724 to 15021817 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 265
Tssr54972 6 15105864 to 15105869 5 + TSS region transcription start site region 54972
Tssr54973 6 15125484 to 15125489 5 + TSS region transcription start site region 54973
Mobq2 6 15144274 to 15144496 222 QTL multigenic obesity QTL 2
Chol2 6 15144274 to 15144496 222 QTL cholesterol 2
D6Mit1 6 15144274 to 15144496 222 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1
Skull7 6 15144274 to 15144496 222 QTL skull morphology 7
Tssr54974 6 15184570 to 15184581 11 + TSS region transcription start site region 54974
Tssr54975 6 15184631 to 15184662 31 + TSS region transcription start site region 54975
Tssr54976 6 15184731 to 15184745 14 + TSS region transcription start site region 54976
Tssr54977 6 15184754 to 15184767 13 + TSS region transcription start site region 54977
Tssr54978 6 15185215 to 15185244 29 + TSS region transcription start site region 54978
Tssr54979 6 15185370 to 15185393 23 + TSS region transcription start site region 54979
Tssr54980 6 15185439 to 15185452 13 + TSS region transcription start site region 54980
Tssr54981 6 15185456 to 15185520 64 + TSS region transcription start site region 54981
Tssr54982 6 15185582 to 15185595 13 + TSS region transcription start site region 54982
Tssr54983 6 15185607 to 15185626 19 + TSS region transcription start site region 54983
Tssr54984 6 15185639 to 15185655 16 + TSS region transcription start site region 54984
Tssr54985 6 15185655 to 15185665 10 + TSS region transcription start site region 54985
Tssr54986 6 15185858 to 15185859 1 + TSS region transcription start site region 54986
Tssr54987 6 15186804 to 15186844 40 + TSS region transcription start site region 54987
Tssr54988 6 15186851 to 15186896 45 + TSS region transcription start site region 54988
Tssr54989 6 15186902 to 15186913 11 + TSS region transcription start site region 54989
Tssr54990 6 15197031 to 15197042 11 + TSS region transcription start site region 54990
Tssr54991 6 15197062 to 15197074 12 + TSS region transcription start site region 54991
Tssr54992 6 15197087 to 15197102 15 + TSS region transcription start site region 54992
Tssr54993 6 15208074 to 15208080 6 + TSS region transcription start site region 54993
D6Ertd588e 6 15249506 to 15249715 209 DNA segment DNA segment, Chr 6, ERATO Doi 588, expressed
D6Mit305 6 15311624 to 15311713 89 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 305
D6Mit305.2 6 15311720 to 15311862 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 305.2
Tssr54994 6 15326873 to 15326922 49 + TSS region transcription start site region 54994
Tssr54995 6 15364486 to 15364495 9 + TSS region transcription start site region 54995
Tssr54996 6 15365212 to 15365216 4 + TSS region transcription start site region 54996
Cpgi17169 6 15379515 to 15379699 184 CpG island CpG island 17169
Tssr54997 6 15394722 to 15394734 12 + TSS region transcription start site region 54997
Gm25470 6 15404981 to 15405091 110 + miRNA gene predicted gene, 25470