Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:113309272-113469281

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brpf1 6 113307137 to 113324860 17723 + protein coding gene bromodomain and PHD finger containing, 1
Gm15492 6 113308666 to 113326747 18081 - antisense lncRNA gene predicted gene 15492
Cpgi17839 6 113326266 to 113327368 1102 CpG island CpG island 17839
Tssr62435 6 113326635 to 113326685 50 - TSS region transcription start site region 62435
Tssr62436 6 113326726 to 113326750 24 - TSS region transcription start site region 62436
Ogg1 6 113326976 to 113334188 7212 + protein coding gene 8-oxoguanine DNA-glycosylase 1
Tssr58194 6 113326990 to 113327013 23 + TSS region transcription start site region 58194
Tssr58195 6 113327019 to 113327031 12 + TSS region transcription start site region 58195
Tssr58196 6 113327225 to 113327241 16 + TSS region transcription start site region 58196
Tssr58197 6 113327243 to 113327264 21 + TSS region transcription start site region 58197
Tssr58198 6 113333304 to 113333332 28 + TSS region transcription start site region 58198
Camk1 6 113334124 to 113343922 9798 - protein coding gene calcium/calmodulin-dependent protein kinase I
Cpgi17840 6 113343721 to 113344078 357 CpG island CpG island 17840
Tssr62437 6 113343898 to 113343966 68 - TSS region transcription start site region 62437
Tssr62438 6 113343975 to 113343989 14 - TSS region transcription start site region 62438
Lmr4b 6 113347325 to 113347522 197 QTL leishmaniasis resistance 4b
Cia3 6 113347325 to 113347522 197 QTL collagen induced arthritis QTL 3
D6Mit10 6 113347325 to 113347522 197 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 10
Gm20589 6 113352638 to 113354042 1404 - pseudogene predicted gene, 20589
Tada3 6 113366640 to 113377940 11300 - protein coding gene transcriptional adaptor 3
Tssr62439 6 113377376 to 113377396 20 - TSS region transcription start site region 62439
Tssr62440 6 113377510 to 113377548 38 - TSS region transcription start site region 62440
Tssr62441 6 113377555 to 113377577 22 - TSS region transcription start site region 62441
Cpgi17841 6 113377582 to 113378824 1242 CpG island CpG island 17841
Tssr62442 6 113377712 to 113377776 64 - TSS region transcription start site region 62442
Tssr62443 6 113377787 to 113377855 68 - TSS region transcription start site region 62443
Tssr62444 6 113377866 to 113377877 11 - TSS region transcription start site region 62444
Arpc4 6 113378115 to 113390448 12333 + protein coding gene actin related protein 2/3 complex, subunit 4
Tssr58199 6 113378158 to 113378191 33 + TSS region transcription start site region 58199
Tssr58200 6 113380713 to 113380747 34 + TSS region transcription start site region 58200
Tssr58201 6 113388957 to 113388986 29 + TSS region transcription start site region 58201
Tssr58202 6 113389035 to 113389059 24 + TSS region transcription start site region 58202
Tssr58203 6 113389109 to 113389113 4 + TSS region transcription start site region 58203
Tssr58204 6 113389192 to 113389220 28 + TSS region transcription start site region 58204
Tssr58205 6 113389246 to 113389259 13 + TSS region transcription start site region 58205
Ttll3 6 113389260 to 113414583 25323 + protein coding gene tubulin tyrosine ligase-like family, member 3
Tssr58206 6 113389272 to 113389281 9 + TSS region transcription start site region 58206
Tssr58207 6 113390715 to 113390716 1 + TSS region transcription start site region 58207
Cpgi17842 6 113392167 to 113393122 955 CpG island CpG island 17842
Tssr58208 6 113392417 to 113392484 67 + TSS region transcription start site region 58208
Tssr58209 6 113392510 to 113392517 7 + TSS region transcription start site region 58209
Tssr58210 6 113393062 to 113393082 20 + TSS region transcription start site region 58210
Rpusd3 6 113415319 to 113419340 4021 - protein coding gene RNA pseudouridylate synthase domain containing 3
Gm44280 6 113416472 to 113419582 3110 + unclassified gene predicted gene, 44280
Cpgi17843 6 113418939 to 113419496 557 CpG island CpG island 17843
Tssr62445 6 113419317 to 113419352 35 - TSS region transcription start site region 62445
Gm24387 6 113422150 to 113422239 89 + miRNA gene predicted gene, 24387
Cidec 6 113424634 to 113435760 11126 - protein coding gene cell death-inducing DFFA-like effector c
Tssr62446 6 113431985 to 113431991 6 - TSS region transcription start site region 62446
Tssr62447 6 113434499 to 113434514 15 - TSS region transcription start site region 62447
Tssr62448 6 113434529 to 113434546 17 - TSS region transcription start site region 62448
Tssr62449 6 113434757 to 113434770 13 - TSS region transcription start site region 62449
Tssr62450 6 113434777 to 113434788 11 - TSS region transcription start site region 62450
Tssr62451 6 113434800 to 113434807 7 - TSS region transcription start site region 62451
Tssr58211 6 113434892 to 113434906 14 + TSS region transcription start site region 58211
Tssr62452 6 113435748 to 113435764 16 - TSS region transcription start site region 62452
Gm43928 6 113440486 to 113440894 408 - pseudogene predicted gene, 43928
Cpgi17844 6 113442382 to 113443108 726 CpG island CpG island 17844
Jagn1 6 113442569 to 113448229 5660 + protein coding gene jagunal homolog 1
Tssr58212 6 113442571 to 113442627 56 + TSS region transcription start site region 58212
Tssr58213 6 113442628 to 113442635 7 + TSS region transcription start site region 58213
Il17re 6 113458484 to 113470758 12274 + protein coding gene interleukin 17 receptor E
Tssr58214 6 113458765 to 113458836 71 + TSS region transcription start site region 58214
Cpgi17845 6 113469267 to 113470265 998 CpG island CpG island 17845