Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:113281888-114512047

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265 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
ssl 6 100057020 to 114282207 14225187 heritable phenotypic marker small swaying lethal
Pnhdlc1 6 105564822 to 114368849 8804027 QTL plasma non-HDL cholesterol 1
Cpgi17835 6 113282231 to 113282823 592 CpG island CpG island 17835
Cpne9 6 113282268 to 113305571 23303 + protein coding gene copine family member IX
Tssr58181 6 113282302 to 113282316 14 + TSS region transcription start site region 58181
Tssr58182 6 113282326 to 113282344 18 + TSS region transcription start site region 58182
Tssr58183 6 113282354 to 113282369 15 + TSS region transcription start site region 58183
Cpgi17836 6 113283070 to 113283474 404 CpG island CpG island 17836
Tssr58184 6 113283850 to 113283880 30 + TSS region transcription start site region 58184
Cpgi17837 6 113289358 to 113289634 276 CpG island CpG island 17837
Tssr58185 6 113301560 to 113301564 4 + TSS region transcription start site region 58185
Tssr58186 6 113301576 to 113301584 8 + TSS region transcription start site region 58186
Tssr58187 6 113301612 to 113301619 7 + TSS region transcription start site region 58187
Tssr58188 6 113301620 to 113301629 9 + TSS region transcription start site region 58188
Gm43935 6 113305625 to 113306674 1049 - unclassified gene predicted gene, 43935
Cpgi17838 6 113306316 to 113308035 1719 CpG island CpG island 17838
Tssr58189 6 113306950 to 113306977 27 + TSS region transcription start site region 58189
Brpf1 6 113307137 to 113324860 17723 + protein coding gene bromodomain and PHD finger containing, 1
Tssr58190 6 113307160 to 113307230 70 + TSS region transcription start site region 58190
Tssr58191 6 113307239 to 113307246 7 + TSS region transcription start site region 58191
Tssr62434 6 113307767 to 113307786 19 - TSS region transcription start site region 62434
Tssr58192 6 113307841 to 113307861 20 + TSS region transcription start site region 58192
Tssr58193 6 113307867 to 113307885 18 + TSS region transcription start site region 58193
Gm15492 6 113308666 to 113326747 18081 - antisense lncRNA gene predicted gene 15492
Cpgi17839 6 113326266 to 113327368 1102 CpG island CpG island 17839
Tssr62435 6 113326635 to 113326685 50 - TSS region transcription start site region 62435
Tssr62436 6 113326726 to 113326750 24 - TSS region transcription start site region 62436
Ogg1 6 113326976 to 113334188 7212 + protein coding gene 8-oxoguanine DNA-glycosylase 1
Tssr58194 6 113326990 to 113327013 23 + TSS region transcription start site region 58194
Tssr58195 6 113327019 to 113327031 12 + TSS region transcription start site region 58195
Tssr58196 6 113327225 to 113327241 16 + TSS region transcription start site region 58196
Tssr58197 6 113327243 to 113327264 21 + TSS region transcription start site region 58197
Tssr58198 6 113333304 to 113333332 28 + TSS region transcription start site region 58198
Camk1 6 113334124 to 113343922 9798 - protein coding gene calcium/calmodulin-dependent protein kinase I
Cpgi17840 6 113343721 to 113344078 357 CpG island CpG island 17840
Tssr62437 6 113343898 to 113343966 68 - TSS region transcription start site region 62437
Tssr62438 6 113343975 to 113343989 14 - TSS region transcription start site region 62438
D6Mit10 6 113347325 to 113347522 197 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 10
Cia3 6 113347325 to 113347522 197 QTL collagen induced arthritis QTL 3
Lmr4b 6 113347325 to 113347522 197 QTL leishmaniasis resistance 4b
Gm20589 6 113352638 to 113354042 1404 - pseudogene predicted gene, 20589
Tada3 6 113366640 to 113377940 11300 - protein coding gene transcriptional adaptor 3
Tssr62439 6 113377376 to 113377396 20 - TSS region transcription start site region 62439
Tssr62440 6 113377510 to 113377548 38 - TSS region transcription start site region 62440
Tssr62441 6 113377555 to 113377577 22 - TSS region transcription start site region 62441
Cpgi17841 6 113377582 to 113378824 1242 CpG island CpG island 17841
Tssr62442 6 113377712 to 113377776 64 - TSS region transcription start site region 62442
Tssr62443 6 113377787 to 113377855 68 - TSS region transcription start site region 62443
Tssr62444 6 113377866 to 113377877 11 - TSS region transcription start site region 62444
Arpc4 6 113378115 to 113390448 12333 + protein coding gene actin related protein 2/3 complex, subunit 4
Tssr58199 6 113378158 to 113378191 33 + TSS region transcription start site region 58199
Tssr58200 6 113380713 to 113380747 34 + TSS region transcription start site region 58200
Tssr58201 6 113388957 to 113388986 29 + TSS region transcription start site region 58201
Tssr58202 6 113389035 to 113389059 24 + TSS region transcription start site region 58202
Tssr58203 6 113389109 to 113389113 4 + TSS region transcription start site region 58203
Tssr58204 6 113389192 to 113389220 28 + TSS region transcription start site region 58204
Tssr58205 6 113389246 to 113389259 13 + TSS region transcription start site region 58205
Ttll3 6 113389260 to 113414583 25323 + protein coding gene tubulin tyrosine ligase-like family, member 3
Tssr58206 6 113389272 to 113389281 9 + TSS region transcription start site region 58206
Tssr58207 6 113390715 to 113390716 1 + TSS region transcription start site region 58207
Cpgi17842 6 113392167 to 113393122 955 CpG island CpG island 17842
Tssr58208 6 113392417 to 113392484 67 + TSS region transcription start site region 58208
Tssr58209 6 113392510 to 113392517 7 + TSS region transcription start site region 58209
Tssr58210 6 113393062 to 113393082 20 + TSS region transcription start site region 58210
Rpusd3 6 113415319 to 113419340 4021 - protein coding gene RNA pseudouridylate synthase domain containing 3
Gm44280 6 113416472 to 113419582 3110 + unclassified gene predicted gene, 44280
Cpgi17843 6 113418939 to 113419496 557 CpG island CpG island 17843
Tssr62445 6 113419317 to 113419352 35 - TSS region transcription start site region 62445
Gm24387 6 113422150 to 113422239 89 + miRNA gene predicted gene, 24387
Cidec 6 113424634 to 113435760 11126 - protein coding gene cell death-inducing DFFA-like effector c
Tssr62446 6 113431985 to 113431991 6 - TSS region transcription start site region 62446
Tssr62447 6 113434499 to 113434514 15 - TSS region transcription start site region 62447
Tssr62448 6 113434529 to 113434546 17 - TSS region transcription start site region 62448
Tssr62449 6 113434757 to 113434770 13 - TSS region transcription start site region 62449
Tssr62450 6 113434777 to 113434788 11 - TSS region transcription start site region 62450
Tssr62451 6 113434800 to 113434807 7 - TSS region transcription start site region 62451
Tssr58211 6 113434892 to 113434906 14 + TSS region transcription start site region 58211
Tssr62452 6 113435748 to 113435764 16 - TSS region transcription start site region 62452
Gm43928 6 113440486 to 113440894 408 - pseudogene predicted gene, 43928
Cpgi17844 6 113442382 to 113443108 726 CpG island CpG island 17844
Jagn1 6 113442569 to 113448229 5660 + protein coding gene jagunal homolog 1
Tssr58212 6 113442571 to 113442627 56 + TSS region transcription start site region 58212
Tssr58213 6 113442628 to 113442635 7 + TSS region transcription start site region 58213
Il17re 6 113458484 to 113470758 12274 + protein coding gene interleukin 17 receptor E
Tssr58214 6 113458765 to 113458836 71 + TSS region transcription start site region 58214
Cpgi17845 6 113469267 to 113470265 998 CpG island CpG island 17845
Il17rc 6 113471455 to 113483163 11708 + protein coding gene interleukin 17 receptor C
Tssr58215 6 113471464 to 113471475 11 + TSS region transcription start site region 58215
Tssr58216 6 113471481 to 113471513 32 + TSS region transcription start site region 58216
Tssr58217 6 113471515 to 113471540 25 + TSS region transcription start site region 58217
Tssr58218 6 113472259 to 113472269 10 + TSS region transcription start site region 58218
Tssr58219 6 113472276 to 113472291 15 + TSS region transcription start site region 58219
Cpgi17846 6 113482377 to 113483473 1096 CpG island CpG island 17846
Tssr62453 6 113483156 to 113483168 12 - TSS region transcription start site region 62453
Tssr62454 6 113483170 to 113483185 15 - TSS region transcription start site region 62454
Creld1 6 113483297 to 113493343 10046 + protein coding gene cysteine-rich with EGF-like domains 1
Tssr58220 6 113483298 to 113483316 18 + TSS region transcription start site region 58220
Tssr58221 6 113483329 to 113483366 37 + TSS region transcription start site region 58221
Tssr58222 6 113483412 to 113483435 23 + TSS region transcription start site region 58222
Tssr58223 6 113483449 to 113483473 24 + TSS region transcription start site region 58223
Tssr58224 6 113483513 to 113483524 11 + TSS region transcription start site region 58224
Tssr58225 6 113483528 to 113483571 43 + TSS region transcription start site region 58225
Tssr58226 6 113483584 to 113483618 34 + TSS region transcription start site region 58226
Prrt3 6 113493639 to 113501931 8292 - protein coding gene proline-rich transmembrane protein 3
Cpgi17847 6 113494216 to 113495458 1242 CpG island CpG island 17847
Cpgi17848 6 113501646 to 113502113 467 CpG island CpG island 17848
Tssr62455 6 113501877 to 113501949 72 - TSS region transcription start site region 62455
Tssr62456 6 113501950 to 113501963 13 - TSS region transcription start site region 62456
Emc3 6 113514887 to 113531638 16751 - protein coding gene ER membrane protein complex subunit 3
Gm23365 6 113528550 to 113528674 124 - miRNA gene predicted gene, 23365
Cpgi17849 6 113531277 to 113531805 528 CpG island CpG island 17849
Tssr62457 6 113531501 to 113531512 11 - TSS region transcription start site region 62457
Tssr62458 6 113531575 to 113531667 92 - TSS region transcription start site region 62458
Tssr58227 6 113531675 to 113531721 46 + TSS region transcription start site region 58227
Fancd2 6 113531682 to 113597017 65335 + protein coding gene Fanconi anemia, complementation group D2
Tssr58228 6 113537810 to 113537811 1 + TSS region transcription start site region 58228
Tssr1959 6 113544099 to 113544109 10 + TSS region transcription start site region 1959
D6Mit11 6 113544509 to 113544602 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 11
Mnic2 6 113544602 to 86806805 -26737797 QTL macronutrient intake, carbohydrate 2
Gm44232 6 113564641 to 113564865 224 - pseudogene predicted gene, 44232
Gm46971 6 113575770 to 113577013 1243 + lncRNA gene predicted gene, 46971
Fancd2os 6 113596761 to 113600715 3954 - protein coding gene Fancd2 opposite strand
Tssr62459 6 113600626 to 113600643 17 - TSS region transcription start site region 62459
Tssr62460 6 113600645 to 113600653 8 - TSS region transcription start site region 62460
Tssr58229 6 113600758 to 113600764 6 + TSS region transcription start site region 58229
Cpgi17850 6 113604375 to 113605357 982 CpG island CpG island 17850
Tssr58230 6 113604749 to 113604768 19 + TSS region transcription start site region 58230
Brk1 6 113604772 to 113616951 12179 + protein coding gene BRICK1, SCAR/WAVE actin-nucleating complex subunit
Gm44200 6 113607475 to 113611527 4052 + sense intronic lncRNA gene predicted gene, 44200
Gm44199 6 113610318 to 113612445 2127 - antisense lncRNA gene predicted gene, 44199
Tssr58231 6 113616063 to 113616109 46 + TSS region transcription start site region 58231
Tssr58232 6 113616214 to 113616226 12 + TSS region transcription start site region 58232
Tssr62461 6 113623528 to 113623532 4 - TSS region transcription start site region 62461
Cpgi17851 6 113623671 to 113624865 1194 CpG island CpG island 17851
Tssr58233 6 113623988 to 113624037 49 + TSS region transcription start site region 58233
Vhl 6 113624021 to 113631633 7612 + protein coding gene von Hippel-Lindau tumor suppressor
Tssr58234 6 113624048 to 113624062 14 + TSS region transcription start site region 58234
Tssr58235 6 113624126 to 113624164 38 + TSS region transcription start site region 58235
Tssr58236 6 113624667 to 113624678 11 + TSS region transcription start site region 58236
1700015O11Rik 6 113631649 to 113633144 1495 - lincRNA gene RIKEN cDNA 1700015O11 gene
Tssr62462 6 113633127 to 113633145 18 - TSS region transcription start site region 62462
Cpgi17852 6 113638287 to 113638770 483 CpG island CpG island 17852
Irak2 6 113638467 to 113695026 56559 + protein coding gene interleukin-1 receptor-associated kinase 2
Tssr58237 6 113638483 to 113638544 61 + TSS region transcription start site region 58237
Tssr62463 6 113639363 to 113639377 14 - TSS region transcription start site region 62463
Gm43964 6 113640562 to 113641521 959 - antisense lncRNA gene predicted gene, 43964
Tssr58238 6 113650601 to 113650603 2 + TSS region transcription start site region 58238
Tssr62464 6 113654205 to 113654215 10 - TSS region transcription start site region 62464
Tssr58239 6 113654370 to 113654394 24 + TSS region transcription start site region 58239
Tssr62465 6 113654918 to 113654924 6 - TSS region transcription start site region 62465
Tssr62466 6 113660533 to 113660542 9 - TSS region transcription start site region 62466
Tssr58240 6 113660638 to 113660651 13 + TSS region transcription start site region 58240
Tssr58241 6 113660669 to 113660690 21 + TSS region transcription start site region 58241
Tssr1960 6 113660695 to 113660706 11 + TSS region transcription start site region 1960
Tssr58242 6 113660709 to 113660718 9 + TSS region transcription start site region 58242
Tssr58243 6 113668058 to 113668097 39 + TSS region transcription start site region 58243
Tssr1961 6 113670091 to 113670096 5 + TSS region transcription start site region 1961
Tssr1962 6 113670161 to 113670200 39 + TSS region transcription start site region 1962
Tssr58244 6 113673019 to 113673051 32 + TSS region transcription start site region 58244
Gm43963 6 113676732 to 113679219 2487 - unclassified gene predicted gene, 43963
Tssr58245 6 113681911 to 113681925 14 + TSS region transcription start site region 58245
Tssr58246 6 113682041 to 113682057 16 + TSS region transcription start site region 58246
Tssr58247 6 113684096 to 113684116 20 + TSS region transcription start site region 58247
Gm43912 6 113689855 to 113690392 537 + unclassified gene predicted gene, 43912
Tssr62467 6 113690493 to 113690501 8 - TSS region transcription start site region 62467
Tssr58248 6 113690722 to 113690743 21 + TSS region transcription start site region 58248
Tssr58249 6 113690754 to 113690769 15 + TSS region transcription start site region 58249
Tssr58250 6 113690956 to 113690976 20 + TSS region transcription start site region 58250
Tssr58251 6 113690986 to 113690997 11 + TSS region transcription start site region 58251
Tssr58252 6 113695965 to 113695982 17 + TSS region transcription start site region 58252
Cpgi17853 6 113696607 to 113698172 1565 CpG island CpG island 17853
Tssr62468 6 113696700 to 113696706 6 - TSS region transcription start site region 62468
Tatdn2 6 113697050 to 113711069 14019 + protein coding gene TatD DNase domain containing 2
Tssr58253 6 113697074 to 113697159 85 + TSS region transcription start site region 58253
Tssr58254 6 113697168 to 113697185 17 + TSS region transcription start site region 58254
Tssr58255 6 113697190 to 113697232 42 + TSS region transcription start site region 58255
Tssr58256 6 113697247 to 113697258 11 + TSS region transcription start site region 58256
Tssr58257 6 113697316 to 113697343 27 + TSS region transcription start site region 58257
Tssr58258 6 113697376 to 113697392 16 + TSS region transcription start site region 58258
Tssr58259 6 113697401 to 113697412 11 + TSS region transcription start site region 58259
Tssr58260 6 113702291 to 113702303 12 + TSS region transcription start site region 58260
Mir7042 6 113707208 to 113707265 57 + miRNA gene microRNA 7042
Gm26982 6 113714971 to 113716121 1150 + antisense lncRNA gene predicted gene, 26982
Ghrl 6 113716119 to 113719880 3761 - protein coding gene ghrelin
Tssr62469 6 113717673 to 113717713 40 - TSS region transcription start site region 62469
D6Oda23 6 113717974 to 113718116 142 DNA segment DNA segment, Chr 6, Sen-ichi Oda 23
Gm44033 6 113718584 to 113719278 694 + unclassified gene predicted gene, 44033
Tssr62470 6 113719450 to 113719468 18 - TSS region transcription start site region 62470
Tssr62471 6 113719880 to 113719883 3 - TSS region transcription start site region 62471
Gm44053 6 113725223 to 113726151 928 + lincRNA gene predicted gene, 44053
Sec13 6 113728052 to 113740681 12629 - protein coding gene SEC13 homolog, nuclear pore and COPII coat complex component
Cpgi17854 6 113740263 to 113740903 640 CpG island CpG island 17854
Tssr62472 6 113740675 to 113740708 33 - TSS region transcription start site region 62472
Tssr1963 6 113740728 to 113740734 6 - TSS region transcription start site region 1963
Atp2b2 6 113743842 to 114042613 298771 - protein coding gene ATPase, Ca++ transporting, plasma membrane 2
Tssr62473 6 113747121 to 113747125 4 - TSS region transcription start site region 62473
Cpgi17855 6 113748349 to 113748941 592 CpG island CpG island 17855
Gm44167 6 113797807 to 113799684 1877 - sense intronic lncRNA gene predicted gene, 44167
Tssr62474 6 113843481 to 113843493 12 - TSS region transcription start site region 62474
Cpgi17856 6 113856995 to 113857158 163 CpG island CpG island 17856