Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:113128975-113558989

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Setd5 6 113077365 to 113153435 76070 + protein coding gene SET domain containing 5
Tssr58175 6 113133659 to 113133692 33 + TSS region transcription start site region 58175
Tssr58176 6 113147959 to 113147962 3 + TSS region transcription start site region 58176
Lhfpl4 6 113168090 to 113195384 27294 - protein coding gene lipoma HMGIC fusion partner-like protein 4
Cpgi17830 6 113176483 to 113176646 163 CpG island CpG island 17830
Cpgi17831 6 113184898 to 113185166 268 CpG island CpG island 17831
Cpgi17832 6 113193797 to 113194553 756 CpG island CpG island 17832
Cpgi17833 6 113194715 to 113195793 1078 CpG island CpG island 17833
Tssr62431 6 113195326 to 113195362 36 - TSS region transcription start site region 62431
Tssr62432 6 113195380 to 113195387 7 - TSS region transcription start site region 62432
D6Mit378 6 113208786 to 113208910 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-378
Tssr58177 6 113212834 to 113212836 2 + TSS region transcription start site region 58177
Cpgi17834 6 113237549 to 113238251 702 CpG island CpG island 17834
Mtmr14 6 113237843 to 113281392 43549 + protein coding gene myotubularin related protein 14
Tssr58178 6 113237845 to 113237874 29 + TSS region transcription start site region 58178
Tssr58179 6 113237876 to 113237907 31 + TSS region transcription start site region 58179
Tssr62433 6 113238526 to 113238551 25 - TSS region transcription start site region 62433
Tssr58180 6 113267867 to 113267892 25 + TSS region transcription start site region 58180
Gm16161 6 113275837 to 113276930 1093 - antisense lncRNA gene predicted gene 16161
Cpgi17835 6 113282231 to 113282823 592 CpG island CpG island 17835
Cpne9 6 113282268 to 113305571 23303 + protein coding gene copine family member IX
Tssr58181 6 113282302 to 113282316 14 + TSS region transcription start site region 58181
Tssr58182 6 113282326 to 113282344 18 + TSS region transcription start site region 58182
Tssr58183 6 113282354 to 113282369 15 + TSS region transcription start site region 58183
Cpgi17836 6 113283070 to 113283474 404 CpG island CpG island 17836
Tssr58184 6 113283850 to 113283880 30 + TSS region transcription start site region 58184
Cpgi17837 6 113289358 to 113289634 276 CpG island CpG island 17837
Tssr58185 6 113301560 to 113301564 4 + TSS region transcription start site region 58185
Tssr58186 6 113301576 to 113301584 8 + TSS region transcription start site region 58186
Tssr58187 6 113301612 to 113301619 7 + TSS region transcription start site region 58187
Tssr58188 6 113301620 to 113301629 9 + TSS region transcription start site region 58188
Gm43935 6 113305625 to 113306674 1049 - unclassified gene predicted gene, 43935
Cpgi17838 6 113306316 to 113308035 1719 CpG island CpG island 17838
Tssr58189 6 113306950 to 113306977 27 + TSS region transcription start site region 58189
Brpf1 6 113307137 to 113324860 17723 + protein coding gene bromodomain and PHD finger containing, 1
Tssr58190 6 113307160 to 113307230 70 + TSS region transcription start site region 58190
Tssr58191 6 113307239 to 113307246 7 + TSS region transcription start site region 58191
Tssr62434 6 113307767 to 113307786 19 - TSS region transcription start site region 62434
Tssr58192 6 113307841 to 113307861 20 + TSS region transcription start site region 58192
Tssr58193 6 113307867 to 113307885 18 + TSS region transcription start site region 58193
Gm15492 6 113308666 to 113326747 18081 - antisense lncRNA gene predicted gene 15492
Cpgi17839 6 113326266 to 113327368 1102 CpG island CpG island 17839
Tssr62435 6 113326635 to 113326685 50 - TSS region transcription start site region 62435
Tssr62436 6 113326726 to 113326750 24 - TSS region transcription start site region 62436
Ogg1 6 113326976 to 113334188 7212 + protein coding gene 8-oxoguanine DNA-glycosylase 1
Tssr58194 6 113326990 to 113327013 23 + TSS region transcription start site region 58194
Tssr58195 6 113327019 to 113327031 12 + TSS region transcription start site region 58195
Tssr58196 6 113327225 to 113327241 16 + TSS region transcription start site region 58196
Tssr58197 6 113327243 to 113327264 21 + TSS region transcription start site region 58197
Tssr58198 6 113333304 to 113333332 28 + TSS region transcription start site region 58198
Camk1 6 113334124 to 113343922 9798 - protein coding gene calcium/calmodulin-dependent protein kinase I
Cpgi17840 6 113343721 to 113344078 357 CpG island CpG island 17840
Tssr62437 6 113343898 to 113343966 68 - TSS region transcription start site region 62437
Tssr62438 6 113343975 to 113343989 14 - TSS region transcription start site region 62438
Lmr4b 6 113347325 to 113347522 197 QTL leishmaniasis resistance 4b
D6Mit10 6 113347325 to 113347522 197 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 10
Cia3 6 113347325 to 113347522 197 QTL collagen induced arthritis QTL 3
Gm20589 6 113352638 to 113354042 1404 - pseudogene predicted gene, 20589
Tada3 6 113366640 to 113377940 11300 - protein coding gene transcriptional adaptor 3
Tssr62439 6 113377376 to 113377396 20 - TSS region transcription start site region 62439
Tssr62440 6 113377510 to 113377548 38 - TSS region transcription start site region 62440
Tssr62441 6 113377555 to 113377577 22 - TSS region transcription start site region 62441
Cpgi17841 6 113377582 to 113378824 1242 CpG island CpG island 17841
Tssr62442 6 113377712 to 113377776 64 - TSS region transcription start site region 62442
Tssr62443 6 113377787 to 113377855 68 - TSS region transcription start site region 62443
Tssr62444 6 113377866 to 113377877 11 - TSS region transcription start site region 62444
Arpc4 6 113378115 to 113390448 12333 + protein coding gene actin related protein 2/3 complex, subunit 4
Tssr58199 6 113378158 to 113378191 33 + TSS region transcription start site region 58199
Tssr58200 6 113380713 to 113380747 34 + TSS region transcription start site region 58200
Tssr58201 6 113388957 to 113388986 29 + TSS region transcription start site region 58201
Tssr58202 6 113389035 to 113389059 24 + TSS region transcription start site region 58202
Tssr58203 6 113389109 to 113389113 4 + TSS region transcription start site region 58203
Tssr58204 6 113389192 to 113389220 28 + TSS region transcription start site region 58204
Tssr58205 6 113389246 to 113389259 13 + TSS region transcription start site region 58205
Ttll3 6 113389260 to 113414583 25323 + protein coding gene tubulin tyrosine ligase-like family, member 3
Tssr58206 6 113389272 to 113389281 9 + TSS region transcription start site region 58206
Tssr58207 6 113390715 to 113390716 1 + TSS region transcription start site region 58207
Cpgi17842 6 113392167 to 113393122 955 CpG island CpG island 17842
Tssr58208 6 113392417 to 113392484 67 + TSS region transcription start site region 58208
Tssr58209 6 113392510 to 113392517 7 + TSS region transcription start site region 58209
Tssr58210 6 113393062 to 113393082 20 + TSS region transcription start site region 58210
Rpusd3 6 113415319 to 113419340 4021 - protein coding gene RNA pseudouridylate synthase domain containing 3
Gm44280 6 113416472 to 113419582 3110 + unclassified gene predicted gene, 44280
Cpgi17843 6 113418939 to 113419496 557 CpG island CpG island 17843
Tssr62445 6 113419317 to 113419352 35 - TSS region transcription start site region 62445
Gm24387 6 113422150 to 113422239 89 + miRNA gene predicted gene, 24387
Cidec 6 113424634 to 113435760 11126 - protein coding gene cell death-inducing DFFA-like effector c
Tssr62446 6 113431985 to 113431991 6 - TSS region transcription start site region 62446
Tssr62447 6 113434499 to 113434514 15 - TSS region transcription start site region 62447
Tssr62448 6 113434529 to 113434546 17 - TSS region transcription start site region 62448
Tssr62449 6 113434757 to 113434770 13 - TSS region transcription start site region 62449
Tssr62450 6 113434777 to 113434788 11 - TSS region transcription start site region 62450
Tssr62451 6 113434800 to 113434807 7 - TSS region transcription start site region 62451
Tssr58211 6 113434892 to 113434906 14 + TSS region transcription start site region 58211
Tssr62452 6 113435748 to 113435764 16 - TSS region transcription start site region 62452
Gm43928 6 113440486 to 113440894 408 - pseudogene predicted gene, 43928
Cpgi17844 6 113442382 to 113443108 726 CpG island CpG island 17844
Jagn1 6 113442569 to 113448229 5660 + protein coding gene jagunal homolog 1
Tssr58212 6 113442571 to 113442627 56 + TSS region transcription start site region 58212
Tssr58213 6 113442628 to 113442635 7 + TSS region transcription start site region 58213
Il17re 6 113458484 to 113470758 12274 + protein coding gene interleukin 17 receptor E
Tssr58214 6 113458765 to 113458836 71 + TSS region transcription start site region 58214
Cpgi17845 6 113469267 to 113470265 998 CpG island CpG island 17845
Il17rc 6 113471455 to 113483163 11708 + protein coding gene interleukin 17 receptor C
Tssr58215 6 113471464 to 113471475 11 + TSS region transcription start site region 58215
Tssr58216 6 113471481 to 113471513 32 + TSS region transcription start site region 58216
Tssr58217 6 113471515 to 113471540 25 + TSS region transcription start site region 58217
Tssr58218 6 113472259 to 113472269 10 + TSS region transcription start site region 58218
Tssr58219 6 113472276 to 113472291 15 + TSS region transcription start site region 58219
Cpgi17846 6 113482377 to 113483473 1096 CpG island CpG island 17846
Tssr62453 6 113483156 to 113483168 12 - TSS region transcription start site region 62453
Tssr62454 6 113483170 to 113483185 15 - TSS region transcription start site region 62454
Creld1 6 113483297 to 113493343 10046 + protein coding gene cysteine-rich with EGF-like domains 1
Tssr58220 6 113483298 to 113483316 18 + TSS region transcription start site region 58220
Tssr58221 6 113483329 to 113483366 37 + TSS region transcription start site region 58221
Tssr58222 6 113483412 to 113483435 23 + TSS region transcription start site region 58222
Tssr58223 6 113483449 to 113483473 24 + TSS region transcription start site region 58223
Tssr58224 6 113483513 to 113483524 11 + TSS region transcription start site region 58224
Tssr58225 6 113483528 to 113483571 43 + TSS region transcription start site region 58225
Tssr58226 6 113483584 to 113483618 34 + TSS region transcription start site region 58226
Prrt3 6 113493639 to 113501931 8292 - protein coding gene proline-rich transmembrane protein 3
Cpgi17847 6 113494216 to 113495458 1242 CpG island CpG island 17847
Cpgi17848 6 113501646 to 113502113 467 CpG island CpG island 17848
Tssr62455 6 113501877 to 113501949 72 - TSS region transcription start site region 62455
Tssr62456 6 113501950 to 113501963 13 - TSS region transcription start site region 62456
Emc3 6 113514887 to 113531638 16751 - protein coding gene ER membrane protein complex subunit 3
Gm23365 6 113528550 to 113528674 124 - miRNA gene predicted gene, 23365
Cpgi17849 6 113531277 to 113531805 528 CpG island CpG island 17849
Tssr62457 6 113531501 to 113531512 11 - TSS region transcription start site region 62457
Tssr62458 6 113531575 to 113531667 92 - TSS region transcription start site region 62458
Tssr58227 6 113531675 to 113531721 46 + TSS region transcription start site region 58227
Fancd2 6 113531682 to 113597017 65335 + protein coding gene Fanconi anemia, complementation group D2
Tssr58228 6 113537810 to 113537811 1 + TSS region transcription start site region 58228
Tssr1959 6 113544099 to 113544109 10 + TSS region transcription start site region 1959
D6Mit11 6 113544509 to 113544602 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 11
Mnic2 6 113544602 to 86806805 -26737797 QTL macronutrient intake, carbohydrate 2