Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:112597971-113067266

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5578 6 112605544 to 112606779 1235 + pseudogene predicted pseudogene 5578
Cpgi17824 6 112606025 to 112606330 305 CpG island CpG island 17824
Rad18 6 112619850 to 112696686 76836 - protein coding gene RAD18 E3 ubiquitin protein ligase
Tssr62409 6 112620791 to 112620800 9 - TSS region transcription start site region 62409
Tssr62410 6 112659918 to 112659928 10 - TSS region transcription start site region 62410
Tssr62411 6 112693593 to 112693604 11 - TSS region transcription start site region 62411
Tssr62412 6 112694645 to 112694649 4 - TSS region transcription start site region 62412
Cpgi17825 6 112696113 to 112696943 830 CpG island CpG island 17825
Tssr58156 6 112696335 to 112696349 14 + TSS region transcription start site region 58156
Tssr58157 6 112696352 to 112696384 32 + TSS region transcription start site region 58157
Tssr62413 6 112696378 to 112696394 16 - TSS region transcription start site region 62413
Tssr62414 6 112696634 to 112696675 41 - TSS region transcription start site region 62414
Tssr58158 6 112696713 to 112696753 40 + TSS region transcription start site region 58158
Tssr58159 6 112696772 to 112696786 14 + TSS region transcription start site region 58159
Gm35824 6 112696904 to 112698487 1583 + lncRNA gene predicted gene, 35824
Gm26799 6 112699780 to 112704164 4384 + lincRNA gene predicted gene, 26799
Srgap3 6 112717971 to 112947266 229295 - protein coding gene SLIT-ROBO Rho GTPase activating protein 3
Tssr62415 6 112721266 to 112721289 23 - TSS region transcription start site region 62415
Tssr62416 6 112721702 to 112721706 4 - TSS region transcription start site region 62416
Tssr62417 6 112721766 to 112721778 12 - TSS region transcription start site region 62417
Tssr62418 6 112722272 to 112722277 5 - TSS region transcription start site region 62418
Cpgi17826 6 112727275 to 112727487 212 CpG island CpG island 17826
Tssr62419 6 112737389 to 112737390 1 - TSS region transcription start site region 62419
2310039F13Rik 6 112758202 to 112758596 394 unclassified gene RIKEN cDNA 2310039F13 gene
Tssr62420 6 112758391 to 112758397 6 - TSS region transcription start site region 62420
D6Mit328 6 112779350 to 112779474 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 328
Tssr62421 6 112802153 to 112802154 1 - TSS region transcription start site region 62421
D6Oda19 6 112893351 to 112893593 242 DNA segment DNA segment, Chr 6, Sen-ichi Oda 19
Gm19021 6 112897223 to 112897876 653 + pseudogene predicted gene, 19021
Tssr62422 6 112900384 to 112900396 12 - TSS region transcription start site region 62422
Tssr62423 6 112930678 to 112930682 4 - TSS region transcription start site region 62423
Cpgi17827 6 112946810 to 112947344 534 CpG island CpG island 17827
Tssr62424 6 112946904 to 112946915 11 - TSS region transcription start site region 62424
Gm44081 6 112947037 to 112949330 2293 + lincRNA gene predicted gene, 44081
Tssr62425 6 112947246 to 112947277 31 - TSS region transcription start site region 62425
Tssr62426 6 112947281 to 112947301 20 - TSS region transcription start site region 62426
Tssr58160 6 112963368 to 112963386 18 + TSS region transcription start site region 58160
Tssr58161 6 112976179 to 112976183 4 + TSS region transcription start site region 58161
Gm6134 6 112976213 to 112976383 170 + pseudogene predicted pseudogene 6134
Gm43865 6 112991372 to 112991498 126 - pseudogene predicted gene, 43865
Gm8083 6 112992122 to 112992596 474 + pseudogene predicted gene 8083
Gm23244 6 113035843 to 113035934 91 - snRNA gene predicted gene, 23244
Gm43868 6 113044035 to 113046148 2113 - unclassified gene predicted gene, 43868
Cpgi17828 6 113045891 to 113046763 872 CpG island CpG island 17828
Tssr62427 6 113046163 to 113046177 14 - TSS region transcription start site region 62427
Thumpd3 6 113046249 to 113068278 22029 + protein coding gene THUMP domain containing 3
Tssr58162 6 113046304 to 113046369 65 + TSS region transcription start site region 58162
Tssr58163 6 113046372 to 113046389 17 + TSS region transcription start site region 58163
Tssr58164 6 113046477 to 113046488 11 + TSS region transcription start site region 58164
Gm22591 6 113060698 to 113060803 105 + snRNA gene predicted gene, 22591
Tssr58165 6 113065407 to 113065431 24 + TSS region transcription start site region 58165