Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:112113758-112490423

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17819 6 112197503 to 112197785 282 CpG island CpG island 17819
1700054K19Rik 6 112210708 to 112212519 1811 + lincRNA gene RIKEN cDNA 1700054K19 gene
n-R5s165 6 112234163 to 112234262 99 - rRNA gene nuclear encoded rRNA 5S 165
Tilss4 6 112269957 to 125356785 13086828 QTL TNF-induced lethal shock susceptibility 3
D6Mit54 6 112269957 to 112270141 184 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 54
Clas1 6 112269957 to 147052561 34782604 QTL carcinogen-induced lung adenoma susceptibility 1
Tssr62398 6 112271300 to 112271307 7 - TSS region transcription start site region 62398
Cpgi17820 6 112273619 to 112273886 267 CpG island CpG island 17820
Lmcd1 6 112273758 to 112330423 56665 + protein coding gene LIM and cysteine-rich domains 1
Tssr58144 6 112273800 to 112273816 16 + TSS region transcription start site region 58144
5031434C07Rik 6 112285593 to 112288837 3244 - antisense lncRNA gene RIKEN cDNA 5031434C07 gene
Gm44193 6 112293231 to 112295753 2522 + unclassified gene predicted gene, 44193
Tssr1958 6 112305062 to 112305073 11 + TSS region transcription start site region 1958
Tssr62399 6 112352990 to 112352991 1 - TSS region transcription start site region 62399
Ssu2 6 112359324 to 112388023 28699 - protein coding gene ssu-2 homolog (C. elegans)
Tssr62400 6 112388013 to 112388037 24 - TSS region transcription start site region 62400
Gm38873 6 112393085 to 112398174 5089 + lncRNA gene predicted gene, 38873
Gm44336 6 112393350 to 112393817 467 - pseudogene predicted gene, 44336
Gm40395 6 112422733 to 112424511 1778 - lncRNA gene predicted gene, 40395
Gm35649 6 112452799 to 112463888 11089 - lncRNA gene predicted gene, 35649
Cav3 6 112459505 to 112472872 13367 + protein coding gene caveolin 3
Tssr58145 6 112459595 to 112459604 9 + TSS region transcription start site region 58145
Tssr58146 6 112459623 to 112459639 16 + TSS region transcription start site region 58146
Tssr58147 6 112459649 to 112459652 3 + TSS region transcription start site region 58147
Tssr58148 6 112459653 to 112459669 16 + TSS region transcription start site region 58148
Tssr58149 6 112459672 to 112459703 31 + TSS region transcription start site region 58149
Tssr58150 6 112459715 to 112459749 34 + TSS region transcription start site region 58150
Tssr58151 6 112459751 to 112459758 7 + TSS region transcription start site region 58151
Cpgi17821 6 112472197 to 112472438 241 CpG island CpG island 17821
Oxtr 6 112473683 to 112489943 16260 - protein coding gene oxytocin receptor
Tssr62401 6 112475754 to 112475759 5 - TSS region transcription start site region 62401
Cpgi17822 6 112488807 to 112490123 1316 CpG island CpG island 17822
Tssr62402 6 112488919 to 112488935 16 - TSS region transcription start site region 62402
Tssr62403 6 112488961 to 112488970 9 - TSS region transcription start site region 62403
Tssr58152 6 112489039 to 112489050 11 + TSS region transcription start site region 58152
Tssr58153 6 112489054 to 112489067 13 + TSS region transcription start site region 58153
Tssr58154 6 112489095 to 112489129 34 + TSS region transcription start site region 58154
Tssr58155 6 112489224 to 112489256 32 + TSS region transcription start site region 58155
Tssr62404 6 112489819 to 112489828 9 - TSS region transcription start site region 62404