Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:112088919-112888935

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcga4c 6 110959922 to 112581887 1621965 QTL home cage activity 4c
D6Mit389 6 112094529 to 112094670 141 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 389
Cpgi17818 6 112108798 to 112108955 157 CpG island CpG island 17818
Cpgi17819 6 112197503 to 112197785 282 CpG island CpG island 17819
1700054K19Rik 6 112210708 to 112212519 1811 + lincRNA gene RIKEN cDNA 1700054K19 gene
n-R5s165 6 112234163 to 112234262 99 - rRNA gene nuclear encoded rRNA 5S 165
Tilss4 6 112269957 to 125356785 13086828 QTL TNF-induced lethal shock susceptibility 3
Clas1 6 112269957 to 147052561 34782604 QTL carcinogen-induced lung adenoma susceptibility 1
D6Mit54 6 112269957 to 112270141 184 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 54
Tssr62398 6 112271300 to 112271307 7 - TSS region transcription start site region 62398
Cpgi17820 6 112273619 to 112273886 267 CpG island CpG island 17820
Lmcd1 6 112273758 to 112330423 56665 + protein coding gene LIM and cysteine-rich domains 1
Tssr58144 6 112273800 to 112273816 16 + TSS region transcription start site region 58144
5031434C07Rik 6 112285593 to 112288837 3244 - antisense lncRNA gene RIKEN cDNA 5031434C07 gene
Gm44193 6 112293231 to 112295753 2522 + unclassified gene predicted gene, 44193
Tssr1958 6 112305062 to 112305073 11 + TSS region transcription start site region 1958
Tssr62399 6 112352990 to 112352991 1 - TSS region transcription start site region 62399
Ssu2 6 112359324 to 112388023 28699 - protein coding gene ssu-2 homolog (C. elegans)
Tssr62400 6 112388013 to 112388037 24 - TSS region transcription start site region 62400
Gm38873 6 112393085 to 112398174 5089 + lncRNA gene predicted gene, 38873
Gm44336 6 112393350 to 112393817 467 - pseudogene predicted gene, 44336
Gm40395 6 112422733 to 112424511 1778 - lncRNA gene predicted gene, 40395
Gm35649 6 112452799 to 112463888 11089 - lncRNA gene predicted gene, 35649
Cav3 6 112459505 to 112472872 13367 + protein coding gene caveolin 3
Tssr58145 6 112459595 to 112459604 9 + TSS region transcription start site region 58145
Tssr58146 6 112459623 to 112459639 16 + TSS region transcription start site region 58146
Tssr58147 6 112459649 to 112459652 3 + TSS region transcription start site region 58147
Tssr58148 6 112459653 to 112459669 16 + TSS region transcription start site region 58148
Tssr58149 6 112459672 to 112459703 31 + TSS region transcription start site region 58149
Tssr58150 6 112459715 to 112459749 34 + TSS region transcription start site region 58150
Tssr58151 6 112459751 to 112459758 7 + TSS region transcription start site region 58151
Cpgi17821 6 112472197 to 112472438 241 CpG island CpG island 17821
Oxtr 6 112473683 to 112489943 16260 - protein coding gene oxytocin receptor
Tssr62401 6 112475754 to 112475759 5 - TSS region transcription start site region 62401
Cpgi17822 6 112488807 to 112490123 1316 CpG island CpG island 17822
Tssr62402 6 112488919 to 112488935 16 - TSS region transcription start site region 62402
Tssr62403 6 112488961 to 112488970 9 - TSS region transcription start site region 62403
Tssr58152 6 112489039 to 112489050 11 + TSS region transcription start site region 58152
Tssr58153 6 112489054 to 112489067 13 + TSS region transcription start site region 58153
Tssr58154 6 112489095 to 112489129 34 + TSS region transcription start site region 58154
Tssr58155 6 112489224 to 112489256 32 + TSS region transcription start site region 58155
Tssr62404 6 112489819 to 112489828 9 - TSS region transcription start site region 62404
Cpgi17823 6 112490599 to 112491153 554 CpG island CpG island 17823
Tssr62405 6 112490786 to 112490803 17 - TSS region transcription start site region 62405
Tssr62406 6 112490804 to 112490829 25 - TSS region transcription start site region 62406
Tssr62407 6 112490831 to 112490844 13 - TSS region transcription start site region 62407
Tssr62408 6 112491042 to 112491044 2 - TSS region transcription start site region 62408
Gm27944 6 112513447 to 112513549 102 + snRNA gene predicted gene, 27944
D6Mit107 6 112533607 to 112533755 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 107
Gm35706 6 112541763 to 112546264 4501 - lncRNA gene predicted gene, 35706
Gm15519 6 112563642 to 112565207 1565 + pseudogene predicted gene 15519
D6Mit23 6 112581750 to 112581887 137 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 23
Gm23002 6 112592967 to 112593073 106 - snRNA gene predicted gene, 23002
Gm5578 6 112605544 to 112606779 1235 + pseudogene predicted pseudogene 5578
Cpgi17824 6 112606025 to 112606330 305 CpG island CpG island 17824
Rad18 6 112619850 to 112696686 76836 - protein coding gene RAD18 E3 ubiquitin protein ligase
Tssr62409 6 112620791 to 112620800 9 - TSS region transcription start site region 62409
Tssr62410 6 112659918 to 112659928 10 - TSS region transcription start site region 62410
Tssr62411 6 112693593 to 112693604 11 - TSS region transcription start site region 62411
Tssr62412 6 112694645 to 112694649 4 - TSS region transcription start site region 62412
Cpgi17825 6 112696113 to 112696943 830 CpG island CpG island 17825
Tssr58156 6 112696335 to 112696349 14 + TSS region transcription start site region 58156
Tssr58157 6 112696352 to 112696384 32 + TSS region transcription start site region 58157
Tssr62413 6 112696378 to 112696394 16 - TSS region transcription start site region 62413
Tssr62414 6 112696634 to 112696675 41 - TSS region transcription start site region 62414
Tssr58158 6 112696713 to 112696753 40 + TSS region transcription start site region 58158
Tssr58159 6 112696772 to 112696786 14 + TSS region transcription start site region 58159
Gm35824 6 112696904 to 112698487 1583 + lncRNA gene predicted gene, 35824
Gm26799 6 112699780 to 112704164 4384 + lincRNA gene predicted gene, 26799
Srgap3 6 112717971 to 112947266 229295 - protein coding gene SLIT-ROBO Rho GTPase activating protein 3
Tssr62415 6 112721266 to 112721289 23 - TSS region transcription start site region 62415
Tssr62416 6 112721702 to 112721706 4 - TSS region transcription start site region 62416
Tssr62417 6 112721766 to 112721778 12 - TSS region transcription start site region 62417
Tssr62418 6 112722272 to 112722277 5 - TSS region transcription start site region 62418
Cpgi17826 6 112727275 to 112727487 212 CpG island CpG island 17826
Tssr62419 6 112737389 to 112737390 1 - TSS region transcription start site region 62419
2310039F13Rik 6 112758202 to 112758596 394 unclassified gene RIKEN cDNA 2310039F13 gene
Tssr62420 6 112758391 to 112758397 6 - TSS region transcription start site region 62420
D6Mit328 6 112779350 to 112779474 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 328
Tssr62421 6 112802153 to 112802154 1 - TSS region transcription start site region 62421