Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:108016740-108726743

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr58052 6 108065035 to 108065053 18 + TSS region transcription start site region 58052
Setmar 6 108065045 to 108077122 12077 + protein coding gene SET domain without mariner transposase fusion
Sumf1 6 108107028 to 108185582 78554 - protein coding gene sulfatase modifying factor 1
A430109H19Rik 6 108128732 to 108129204 472 unclassified gene RIKEN cDNA A430109H19 gene
Rpl36-ps12 6 108140120 to 108140509 389 - pseudogene ribosomal protein L36, pseudogene 12
Tssr62383 6 108165009 to 108165021 12 - TSS region transcription start site region 62383
Cpgi17808 6 108185083 to 108185685 602 CpG island CpG island 17808
Tssr62384 6 108185552 to 108185587 35 - TSS region transcription start site region 62384
Gm38872 6 108212256 to 108212962 706 - lncRNA gene predicted gene, 38872
Cpgi17809 6 108212837 to 108213447 610 CpG island CpG island 17809
Tssr58053 6 108213086 to 108213123 37 + TSS region transcription start site region 58053
Itpr1 6 108213096 to 108551109 338013 + protein coding gene inositol 1,4,5-trisphosphate receptor 1
Tssr58054 6 108213219 to 108213269 50 + TSS region transcription start site region 58054
Tssr58055 6 108213311 to 108213323 12 + TSS region transcription start site region 58055
Cpgi17810 6 108213838 to 108213993 155 CpG island CpG island 17810
Tssr58056 6 108213928 to 108213944 16 + TSS region transcription start site region 58056
Tssr58057 6 108257910 to 108257915 5 + TSS region transcription start site region 58057
Tssr58058 6 108277106 to 108277124 18 + TSS region transcription start site region 58058
Tssr58059 6 108371740 to 108371743 3 + TSS region transcription start site region 58059
Tssr58060 6 108386727 to 108386742 15 + TSS region transcription start site region 58060
Gm35165 6 108450619 to 108473396 22777 - lncRNA gene predicted gene, 35165
Gm27813 6 108456183 to 108456536 353 + unclassified non-coding RNA gene predicted gene, 27813
Gm44101 6 108470355 to 108472575 2220 - unclassified gene predicted gene, 44101
Tssr62385 6 108471649 to 108471664 15 - TSS region transcription start site region 62385
Tssr62386 6 108472536 to 108472549 13 - TSS region transcription start site region 62386
Tssr58061 6 108473033 to 108473043 10 + TSS region transcription start site region 58061
Tssr58062 6 108473067 to 108473082 15 + TSS region transcription start site region 58062
Tssr58063 6 108473084 to 108473101 17 + TSS region transcription start site region 58063
Tssr58064 6 108473115 to 108473128 13 + TSS region transcription start site region 58064
Mir7661 6 108489743 to 108489803 60 + miRNA gene microRNA 7661
Tssr58065 6 108512429 to 108512431 2 + TSS region transcription start site region 58065
Gm44040 6 108519029 to 108525687 6658 - antisense lncRNA gene predicted gene, 44040
Tssr62387 6 108532625 to 108532646 21 - TSS region transcription start site region 62387
Tssr62388 6 108532787 to 108532806 19 - TSS region transcription start site region 62388
Tssr58066 6 108549892 to 108549907 15 + TSS region transcription start site region 58066
Tssr62389 6 108553093 to 108553097 4 - TSS region transcription start site region 62389
Gm16433 6 108563605 to 108565588 1983 - pseudogene predicted gene 16433
Cpgi17811 6 108571004 to 108571243 239 CpG island CpG island 17811
0610040F04Rik 6 108577039 to 108660934 83895 - antisense lncRNA gene RIKEN cDNA 0610040F04 gene
Gm38167 6 108594508 to 108595685 1177 - unclassified gene predicted gene, 38167
4833447P13Rik 6 108656916 to 108659539 2623 unclassified gene RIKEN cDNA 4833447P13 gene
Gm17055 6 108656917 to 108659537 2620 + unclassified non-coding RNA gene predicted gene 17055
Tssr58067 6 108658610 to 108658621 11 + TSS region transcription start site region 58067
Tssr58068 6 108658654 to 108658670 16 + TSS region transcription start site region 58068
Tssr58069 6 108658759 to 108658770 11 + TSS region transcription start site region 58069
Tssr58070 6 108658803 to 108658813 10 + TSS region transcription start site region 58070
Cpgi17812 6 108659129 to 108661733 2604 CpG island CpG island 17812
Tssr62390 6 108659403 to 108659422 19 - TSS region transcription start site region 62390
Tssr58071 6 108659664 to 108659667 3 + TSS region transcription start site region 58071
Tssr62391 6 108659802 to 108659823 21 - TSS region transcription start site region 62391
Tssr58072 6 108660434 to 108660446 12 + TSS region transcription start site region 58072
Tssr58073 6 108660480 to 108660497 17 + TSS region transcription start site region 58073
Tssr58074 6 108660519 to 108660534 15 + TSS region transcription start site region 58074
Tssr58075 6 108660616 to 108660682 66 + TSS region transcription start site region 58075
Bhlhe40 6 108660629 to 108666925 6296 + protein coding gene basic helix-loop-helix family, member e40
Tssr58076 6 108660772 to 108660787 15 + TSS region transcription start site region 58076
Tssr58077 6 108660855 to 108660866 11 + TSS region transcription start site region 58077
Tssr58078 6 108661747 to 108661777 30 + TSS region transcription start site region 58078
Tssr58079 6 108661990 to 108661996 6 + TSS region transcription start site region 58079
Tssr58080 6 108662339 to 108662343 4 + TSS region transcription start site region 58080
Tssr58081 6 108662770 to 108662778 8 + TSS region transcription start site region 58081
Tssr58082 6 108663119 to 108663142 23 + TSS region transcription start site region 58082
Tssr58083 6 108664739 to 108664750 11 + TSS region transcription start site region 58083
Tssr62392 6 108664985 to 108665005 20 - TSS region transcription start site region 62392
Tssr58084 6 108665013 to 108665046 33 + TSS region transcription start site region 58084
Tssr58085 6 108665916 to 108665926 10 + TSS region transcription start site region 58085
Tssr58086 6 108666127 to 108666151 24 + TSS region transcription start site region 58086
Cpgi17813 6 108668316 to 108668754 438 CpG island CpG island 17813
Tssr58087 6 108668558 to 108668590 32 + TSS region transcription start site region 58087
Tssr62393 6 108688506 to 108688510 4 - TSS region transcription start site region 62393
Tssr1957 6 108688529 to 108688537 8 + TSS region transcription start site region 1957
Tssr58088 6 108697809 to 108697819 10 + TSS region transcription start site region 58088
Cpgi17814 6 108700627 to 108700936 309 CpG island CpG island 17814
Gm35359 6 108717531 to 108731381 13850 - lncRNA gene predicted gene, 35359