Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:106995610-108595846

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm22418 6 107001452 to 107001558 106 + snRNA gene predicted gene, 22418
Tssr58047 6 107059630 to 107059640 10 + TSS region transcription start site region 58047
Gm6064 6 107093662 to 107094115 453 - pseudogene predicted gene 6064
Tssr62380 6 107103601 to 107103604 3 - TSS region transcription start site region 62380
Gm34933 6 107182063 to 107195642 13579 - lincRNA gene predicted gene, 34933
Gm44399 6 107345776 to 107346001 225 - pseudogene predicted gene, 44399
D6Mit35 6 107426421 to 107426642 221 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 35
Tssr62381 6 107438315 to 107438316 1 - TSS region transcription start site region 62381
Gm27690 6 107448819 to 107448944 125 - miRNA gene predicted gene, 27690
Gm44277 6 107503808 to 107504456 648 + pseudogene predicted gene, 44277
Cpgi17806 6 107529291 to 107530465 1174 CpG island CpG island 17806
Tssr58048 6 107529717 to 107529780 63 + TSS region transcription start site region 58048
Lrrn1 6 107529768 to 107570214 40446 + protein coding gene leucine rich repeat protein 1, neuronal
Tssr58049 6 107529796 to 107529807 11 + TSS region transcription start site region 58049
Tssr58050 6 107530137 to 107530196 59 + TSS region transcription start site region 58050
Cpgi17807 6 107531182 to 107531367 185 CpG island CpG island 17807
Tssr58051 6 107554436 to 107554439 3 + TSS region transcription start site region 58051
4933431M02Rik 6 107627774 to 107632549 4775 + lincRNA gene RIKEN cDNA 4933431M02 gene
Ichs 6 107795610 to 107795846 236 QTL immediate cutaneous hypersensitivity QTL
D6Mit105 6 107795610 to 107795846 236 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 105
Gm35017 6 107802698 to 107815057 12359 - lncRNA gene predicted gene, 35017
Vmn1r-ps37 6 107863308 to 107863746 438 + pseudogene vomeronasal 1 receptor, pseudogene 37
Vmn1r-ps38 6 107864522 to 107865343 821 - pseudogene vomeronasal 1 receptor, pseudogene 38
Tssr62382 6 107877519 to 107877520 1 - TSS region transcription start site region 62382
Gm19177 6 107881092 to 107881673 581 + pseudogene predicted gene, 19177
Gm44279 6 107888681 to 107889152 471 + pseudogene predicted gene, 44279
Tssr58052 6 108065035 to 108065053 18 + TSS region transcription start site region 58052
Setmar 6 108065045 to 108077122 12077 + protein coding gene SET domain without mariner transposase fusion
Sumf1 6 108107028 to 108185582 78554 - protein coding gene sulfatase modifying factor 1
A430109H19Rik 6 108128732 to 108129204 472 unclassified gene RIKEN cDNA A430109H19 gene
Rpl36-ps12 6 108140120 to 108140509 389 - pseudogene ribosomal protein L36, pseudogene 12
Tssr62383 6 108165009 to 108165021 12 - TSS region transcription start site region 62383
Cpgi17808 6 108185083 to 108185685 602 CpG island CpG island 17808
Tssr62384 6 108185552 to 108185587 35 - TSS region transcription start site region 62384
Gm38872 6 108212256 to 108212962 706 - lncRNA gene predicted gene, 38872
Cpgi17809 6 108212837 to 108213447 610 CpG island CpG island 17809
Tssr58053 6 108213086 to 108213123 37 + TSS region transcription start site region 58053
Itpr1 6 108213096 to 108551109 338013 + protein coding gene inositol 1,4,5-trisphosphate receptor 1
Tssr58054 6 108213219 to 108213269 50 + TSS region transcription start site region 58054
Tssr58055 6 108213311 to 108213323 12 + TSS region transcription start site region 58055
Cpgi17810 6 108213838 to 108213993 155 CpG island CpG island 17810
Tssr58056 6 108213928 to 108213944 16 + TSS region transcription start site region 58056
Tssr58057 6 108257910 to 108257915 5 + TSS region transcription start site region 58057
Tssr58058 6 108277106 to 108277124 18 + TSS region transcription start site region 58058
Tssr58059 6 108371740 to 108371743 3 + TSS region transcription start site region 58059
Tssr58060 6 108386727 to 108386742 15 + TSS region transcription start site region 58060
Gm35165 6 108450619 to 108473396 22777 - lncRNA gene predicted gene, 35165
Gm27813 6 108456183 to 108456536 353 + unclassified non-coding RNA gene predicted gene, 27813
Gm44101 6 108470355 to 108472575 2220 - unclassified gene predicted gene, 44101
Tssr62385 6 108471649 to 108471664 15 - TSS region transcription start site region 62385
Tssr62386 6 108472536 to 108472549 13 - TSS region transcription start site region 62386
Tssr58061 6 108473033 to 108473043 10 + TSS region transcription start site region 58061
Tssr58062 6 108473067 to 108473082 15 + TSS region transcription start site region 58062
Tssr58063 6 108473084 to 108473101 17 + TSS region transcription start site region 58063
Tssr58064 6 108473115 to 108473128 13 + TSS region transcription start site region 58064
Mir7661 6 108489743 to 108489803 60 + miRNA gene microRNA 7661
Tssr58065 6 108512429 to 108512431 2 + TSS region transcription start site region 58065
Gm44040 6 108519029 to 108525687 6658 - antisense lncRNA gene predicted gene, 44040
Tssr62387 6 108532625 to 108532646 21 - TSS region transcription start site region 62387
Tssr62388 6 108532787 to 108532806 19 - TSS region transcription start site region 62388
Tssr58066 6 108549892 to 108549907 15 + TSS region transcription start site region 58066
Tssr62389 6 108553093 to 108553097 4 - TSS region transcription start site region 62389
Gm16433 6 108563605 to 108565588 1983 - pseudogene predicted gene 16433
Cpgi17811 6 108571004 to 108571243 239 CpG island CpG island 17811
0610040F04Rik 6 108577039 to 108660934 83895 - antisense lncRNA gene RIKEN cDNA 0610040F04 gene
Gm38167 6 108594508 to 108595685 1177 - unclassified gene predicted gene, 38167