Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:106567028-109725582

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cntn4 6 105677660 to 106699310 1021650 + protein coding gene contactin 4
D6Mit39 6 106569226 to 106569365 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 39
Il5ra 6 106710375 to 106749037 38662 - protein coding gene interleukin 5 receptor, alpha
Tssr62366 6 106729901 to 106729910 9 - TSS region transcription start site region 62366
Tssr62367 6 106748012 to 106748019 7 - TSS region transcription start site region 62367
Tssr62368 6 106748043 to 106748053 10 - TSS region transcription start site region 62368
Tssr62369 6 106748063 to 106748077 14 - TSS region transcription start site region 62369
Tssr62370 6 106748934 to 106748958 24 - TSS region transcription start site region 62370
Tssr62371 6 106748959 to 106748992 33 - TSS region transcription start site region 62371
Tssr62372 6 106749172 to 106749206 34 - TSS region transcription start site region 62372
Cpgi17804 6 106769018 to 106769749 731 CpG island CpG island 17804
Trnt1 6 106769131 to 106782474 13343 + protein coding gene tRNA nucleotidyl transferase, CCA-adding, 1
Tssr58042 6 106769131 to 106769234 103 + TSS region transcription start site region 58042
Tssr62373 6 106771638 to 106771649 11 - TSS region transcription start site region 62373
Tssr58043 6 106771695 to 106771703 8 + TSS region transcription start site region 58043
Tssr58044 6 106771751 to 106771758 7 + TSS region transcription start site region 58044
Crbn 6 106780201 to 106800077 19876 - protein coding gene cereblon
Tssr62374 6 106791626 to 106791628 2 - TSS region transcription start site region 62374
Tssr58045 6 106791798 to 106791803 5 + TSS region transcription start site region 58045
Tssr58046 6 106793477 to 106793502 25 + TSS region transcription start site region 58046
Tssr62375 6 106794187 to 106794197 10 - TSS region transcription start site region 62375
Tssr62376 6 106794211 to 106794246 35 - TSS region transcription start site region 62376
Tssr62377 6 106794592 to 106794616 24 - TSS region transcription start site region 62377
Tssr62378 6 106794617 to 106794636 19 - TSS region transcription start site region 62378
Cpgi17805 6 106799692 to 106800348 656 CpG island CpG island 17805
Tssr62379 6 106800051 to 106800095 44 - TSS region transcription start site region 62379
Gm34873 6 106972266 to 106994666 22400 + lncRNA gene predicted gene, 34873
Gm22418 6 107001452 to 107001558 106 + snRNA gene predicted gene, 22418
Tssr58047 6 107059630 to 107059640 10 + TSS region transcription start site region 58047
Gm6064 6 107093662 to 107094115 453 - pseudogene predicted gene 6064
Tssr62380 6 107103601 to 107103604 3 - TSS region transcription start site region 62380
Gm34933 6 107182063 to 107195642 13579 - lincRNA gene predicted gene, 34933
Gm44399 6 107345776 to 107346001 225 - pseudogene predicted gene, 44399
D6Mit35 6 107426421 to 107426642 221 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 35
Tssr62381 6 107438315 to 107438316 1 - TSS region transcription start site region 62381
Gm27690 6 107448819 to 107448944 125 - miRNA gene predicted gene, 27690
Gm44277 6 107503808 to 107504456 648 + pseudogene predicted gene, 44277
Cpgi17806 6 107529291 to 107530465 1174 CpG island CpG island 17806
Tssr58048 6 107529717 to 107529780 63 + TSS region transcription start site region 58048
Lrrn1 6 107529768 to 107570214 40446 + protein coding gene leucine rich repeat protein 1, neuronal
Tssr58049 6 107529796 to 107529807 11 + TSS region transcription start site region 58049
Tssr58050 6 107530137 to 107530196 59 + TSS region transcription start site region 58050
Cpgi17807 6 107531182 to 107531367 185 CpG island CpG island 17807
Tssr58051 6 107554436 to 107554439 3 + TSS region transcription start site region 58051
4933431M02Rik 6 107627774 to 107632549 4775 + lincRNA gene RIKEN cDNA 4933431M02 gene
D6Mit105 6 107795610 to 107795846 236 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 105
Ichs 6 107795610 to 107795846 236 QTL immediate cutaneous hypersensitivity QTL
Gm35017 6 107802698 to 107815057 12359 - lncRNA gene predicted gene, 35017
Vmn1r-ps37 6 107863308 to 107863746 438 + pseudogene vomeronasal 1 receptor, pseudogene 37
Vmn1r-ps38 6 107864522 to 107865343 821 - pseudogene vomeronasal 1 receptor, pseudogene 38
Tssr62382 6 107877519 to 107877520 1 - TSS region transcription start site region 62382
Gm19177 6 107881092 to 107881673 581 + pseudogene predicted gene, 19177
Gm44279 6 107888681 to 107889152 471 + pseudogene predicted gene, 44279
Tssr58052 6 108065035 to 108065053 18 + TSS region transcription start site region 58052
Setmar 6 108065045 to 108077122 12077 + protein coding gene SET domain without mariner transposase fusion
Sumf1 6 108107028 to 108185582 78554 - protein coding gene sulfatase modifying factor 1
A430109H19Rik 6 108128732 to 108129204 472 unclassified gene RIKEN cDNA A430109H19 gene
Rpl36-ps12 6 108140120 to 108140509 389 - pseudogene ribosomal protein L36, pseudogene 12
Tssr62383 6 108165009 to 108165021 12 - TSS region transcription start site region 62383
Cpgi17808 6 108185083 to 108185685 602 CpG island CpG island 17808
Tssr62384 6 108185552 to 108185587 35 - TSS region transcription start site region 62384
Gm38872 6 108212256 to 108212962 706 - lncRNA gene predicted gene, 38872
Cpgi17809 6 108212837 to 108213447 610 CpG island CpG island 17809
Tssr58053 6 108213086 to 108213123 37 + TSS region transcription start site region 58053
Itpr1 6 108213096 to 108551109 338013 + protein coding gene inositol 1,4,5-trisphosphate receptor 1
Tssr58054 6 108213219 to 108213269 50 + TSS region transcription start site region 58054
Tssr58055 6 108213311 to 108213323 12 + TSS region transcription start site region 58055
Cpgi17810 6 108213838 to 108213993 155 CpG island CpG island 17810
Tssr58056 6 108213928 to 108213944 16 + TSS region transcription start site region 58056
Tssr58057 6 108257910 to 108257915 5 + TSS region transcription start site region 58057
Tssr58058 6 108277106 to 108277124 18 + TSS region transcription start site region 58058
Tssr58059 6 108371740 to 108371743 3 + TSS region transcription start site region 58059
Tssr58060 6 108386727 to 108386742 15 + TSS region transcription start site region 58060
Gm35165 6 108450619 to 108473396 22777 - lncRNA gene predicted gene, 35165
Gm27813 6 108456183 to 108456536 353 + unclassified non-coding RNA gene predicted gene, 27813
Gm44101 6 108470355 to 108472575 2220 - unclassified gene predicted gene, 44101
Tssr62385 6 108471649 to 108471664 15 - TSS region transcription start site region 62385
Tssr62386 6 108472536 to 108472549 13 - TSS region transcription start site region 62386
Tssr58061 6 108473033 to 108473043 10 + TSS region transcription start site region 58061
Tssr58062 6 108473067 to 108473082 15 + TSS region transcription start site region 58062
Tssr58063 6 108473084 to 108473101 17 + TSS region transcription start site region 58063
Tssr58064 6 108473115 to 108473128 13 + TSS region transcription start site region 58064
Mir7661 6 108489743 to 108489803 60 + miRNA gene microRNA 7661
Tssr58065 6 108512429 to 108512431 2 + TSS region transcription start site region 58065
Gm44040 6 108519029 to 108525687 6658 - antisense lncRNA gene predicted gene, 44040
Tssr62387 6 108532625 to 108532646 21 - TSS region transcription start site region 62387
Tssr62388 6 108532787 to 108532806 19 - TSS region transcription start site region 62388
Tssr58066 6 108549892 to 108549907 15 + TSS region transcription start site region 58066
Tssr62389 6 108553093 to 108553097 4 - TSS region transcription start site region 62389
Gm16433 6 108563605 to 108565588 1983 - pseudogene predicted gene 16433
Cpgi17811 6 108571004 to 108571243 239 CpG island CpG island 17811
0610040F04Rik 6 108577039 to 108660934 83895 - antisense lncRNA gene RIKEN cDNA 0610040F04 gene
Gm38167 6 108594508 to 108595685 1177 - unclassified gene predicted gene, 38167
4833447P13Rik 6 108656916 to 108659539 2623 unclassified gene RIKEN cDNA 4833447P13 gene
Gm17055 6 108656917 to 108659537 2620 + unclassified non-coding RNA gene predicted gene 17055
Tssr58067 6 108658610 to 108658621 11 + TSS region transcription start site region 58067
Tssr58068 6 108658654 to 108658670 16 + TSS region transcription start site region 58068
Tssr58069 6 108658759 to 108658770 11 + TSS region transcription start site region 58069
Tssr58070 6 108658803 to 108658813 10 + TSS region transcription start site region 58070
Cpgi17812 6 108659129 to 108661733 2604 CpG island CpG island 17812
Tssr62390 6 108659403 to 108659422 19 - TSS region transcription start site region 62390
Tssr58071 6 108659664 to 108659667 3 + TSS region transcription start site region 58071
Tssr62391 6 108659802 to 108659823 21 - TSS region transcription start site region 62391
Tssr58072 6 108660434 to 108660446 12 + TSS region transcription start site region 58072
Tssr58073 6 108660480 to 108660497 17 + TSS region transcription start site region 58073
Tssr58074 6 108660519 to 108660534 15 + TSS region transcription start site region 58074
Tssr58075 6 108660616 to 108660682 66 + TSS region transcription start site region 58075
Bhlhe40 6 108660629 to 108666925 6296 + protein coding gene basic helix-loop-helix family, member e40
Tssr58076 6 108660772 to 108660787 15 + TSS region transcription start site region 58076
Tssr58077 6 108660855 to 108660866 11 + TSS region transcription start site region 58077
Tssr58078 6 108661747 to 108661777 30 + TSS region transcription start site region 58078
Tssr58079 6 108661990 to 108661996 6 + TSS region transcription start site region 58079
Tssr58080 6 108662339 to 108662343 4 + TSS region transcription start site region 58080
Tssr58081 6 108662770 to 108662778 8 + TSS region transcription start site region 58081
Tssr58082 6 108663119 to 108663142 23 + TSS region transcription start site region 58082
Tssr58083 6 108664739 to 108664750 11 + TSS region transcription start site region 58083
Tssr62392 6 108664985 to 108665005 20 - TSS region transcription start site region 62392
Tssr58084 6 108665013 to 108665046 33 + TSS region transcription start site region 58084
Tssr58085 6 108665916 to 108665926 10 + TSS region transcription start site region 58085
Tssr58086 6 108666127 to 108666151 24 + TSS region transcription start site region 58086
Cpgi17813 6 108668316 to 108668754 438 CpG island CpG island 17813
Tssr58087 6 108668558 to 108668590 32 + TSS region transcription start site region 58087
Tssr62393 6 108688506 to 108688510 4 - TSS region transcription start site region 62393
Tssr1957 6 108688529 to 108688537 8 + TSS region transcription start site region 1957
Tssr58088 6 108697809 to 108697819 10 + TSS region transcription start site region 58088
Cpgi17814 6 108700627 to 108700936 309 CpG island CpG island 17814
Gm35359 6 108717531 to 108731381 13850 - lncRNA gene predicted gene, 35359
Tssr62394 6 108731365 to 108731404 39 - TSS region transcription start site region 62394
Cpgi17815 6 108782708 to 108783844 1136 CpG island CpG island 17815
Arl8b 6 108783059 to 108823723 40664 + protein coding gene ADP-ribosylation factor-like 8B
Tssr58089 6 108783064 to 108783116 52 + TSS region transcription start site region 58089
Tssr58090 6 108783117 to 108783135 18 + TSS region transcription start site region 58090
Tssr58091 6 108783207 to 108783245 38 + TSS region transcription start site region 58091
Tssr58092 6 108783249 to 108783262 13 + TSS region transcription start site region 58092
Tssr58093 6 108794879 to 108794924 45 + TSS region transcription start site region 58093
Gm35417 6 108802410 to 108828284 25874 - lncRNA gene predicted gene, 35417
Tssr58094 6 108805677 to 108805684 7 + TSS region transcription start site region 58094
Tssr58095 6 108814985 to 108815006 21 + TSS region transcription start site region 58095
Tssr58096 6 108821571 to 108821610 39 + TSS region transcription start site region 58096
Tssr58097 6 108821613 to 108821643 30 + TSS region transcription start site region 58097
Tssr58098 6 108822336 to 108822340 4 + TSS region transcription start site region 58098
Cpgi17816 6 108828232 to 108829641 1409 CpG island CpG island 17816
Tssr62395 6 108828381 to 108828384 3 - TSS region transcription start site region 62395
Tssr58099 6 108828508 to 108828517 9 + TSS region transcription start site region 58099
Tssr58100 6 108828526 to 108828542 16 + TSS region transcription start site region 58100
Tssr58101 6 108828549 to 108828558 9 + TSS region transcription start site region 58101
Tssr58102 6 108828562 to 108828565 3 + TSS region transcription start site region 58102
Tssr58103 6 108828595 to 108828604 9 + TSS region transcription start site region 58103
Tssr58104 6 108828605 to 108828616 11 + TSS region transcription start site region 58104
Tssr58105 6 108828633 to 108828721 88 + TSS region transcription start site region 58105
Edem1 6 108828641 to 108859356 30715 + protein coding gene ER degradation enhancer, mannosidase alpha-like 1
Tssr58106 6 108828734 to 108828744 10 + TSS region transcription start site region 58106
Tssr58107 6 108829126 to 108829144 18 + TSS region transcription start site region 58107
9430088B20Rik 6 108831845 to 108833441 1596 unclassified gene RIKEN cDNA 9430088B20 gene
Tssr58108 6 108834552 to 108834563 11 + TSS region transcription start site region 58108
Tssr58109 6 108836092 to 108836101 9 + TSS region transcription start site region 58109
Tssr58110 6 108836261 to 108836272 11 + TSS region transcription start site region 58110
Tssr58111 6 108836304 to 108836314 10 + TSS region transcription start site region 58111
Tssr58112 6 108836330 to 108836337 7 + TSS region transcription start site region 58112
Tssr58113 6 108836345 to 108836356 11 + TSS region transcription start site region 58113
Tssr58114 6 108836359 to 108836370 11 + TSS region transcription start site region 58114
Tssr58115 6 108836392 to 108836407 15 + TSS region transcription start site region 58115
Tssr58116 6 108836611 to 108836633 22 + TSS region transcription start site region 58116
Tssr58117 6 108836642 to 108836652 10 + TSS region transcription start site region 58117
Tssr58118 6 108836691 to 108836698 7 + TSS region transcription start site region 58118
Tssr58119 6 108836726 to 108836739 13 + TSS region transcription start site region 58119
Tssr58120 6 108839213 to 108839222 9 + TSS region transcription start site region 58120
Tssr58121 6 108844667 to 108844670 3 + TSS region transcription start site region 58121
Tssr58122 6 108857490 to 108857502 12 + TSS region transcription start site region 58122
Tssr58123 6 108876287 to 108876293 6 + TSS region transcription start site region 58123
Gm6749 6 108882004 to 108882408 404 + protein coding gene predicted pseudogene 6749
Tssr62396 6 108938666 to 108938707 41 - TSS region transcription start site region 62396
D6Mit344 6 108969344 to 108969488 144 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-344
Tssr58124 6 109125516 to 109125517 1 + TSS region transcription start site region 58124
Gm29781 6 109125685 to 109126162 477 + pseudogene predicted gene, 29781
Gm32858 6 109214242 to 109214826 584 + pseudogene predicted gene, 32858
D6Mit327 6 109332676 to 109332800 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 327
Gm44125 6 109386475 to 109386922 447 - pseudogene predicted gene, 44125
Gm4605 6 109443601 to 109444225 624 - pseudogene predicted gene 4605
Tssr62397 6 109505155 to 109505191 36 - TSS region transcription start site region 62397
Gm44161 6 109550371 to 109550623 252 + pseudogene predicted gene, 44161