Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:106468819-108428944

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cntn4 6 105677660 to 106699310 1021650 + protein coding gene contactin 4
D6Mit39 6 106569226 to 106569365 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 39
Il5ra 6 106710375 to 106749037 38662 - protein coding gene interleukin 5 receptor, alpha
Tssr62366 6 106729901 to 106729910 9 - TSS region transcription start site region 62366
Tssr62367 6 106748012 to 106748019 7 - TSS region transcription start site region 62367
Tssr62368 6 106748043 to 106748053 10 - TSS region transcription start site region 62368
Tssr62369 6 106748063 to 106748077 14 - TSS region transcription start site region 62369
Tssr62370 6 106748934 to 106748958 24 - TSS region transcription start site region 62370
Tssr62371 6 106748959 to 106748992 33 - TSS region transcription start site region 62371
Tssr62372 6 106749172 to 106749206 34 - TSS region transcription start site region 62372
Cpgi17804 6 106769018 to 106769749 731 CpG island CpG island 17804
Tssr58042 6 106769131 to 106769234 103 + TSS region transcription start site region 58042
Trnt1 6 106769131 to 106782474 13343 + protein coding gene tRNA nucleotidyl transferase, CCA-adding, 1
Tssr62373 6 106771638 to 106771649 11 - TSS region transcription start site region 62373
Tssr58043 6 106771695 to 106771703 8 + TSS region transcription start site region 58043
Tssr58044 6 106771751 to 106771758 7 + TSS region transcription start site region 58044
Crbn 6 106780201 to 106800077 19876 - protein coding gene cereblon
Tssr62374 6 106791626 to 106791628 2 - TSS region transcription start site region 62374
Tssr58045 6 106791798 to 106791803 5 + TSS region transcription start site region 58045
Tssr58046 6 106793477 to 106793502 25 + TSS region transcription start site region 58046
Tssr62375 6 106794187 to 106794197 10 - TSS region transcription start site region 62375
Tssr62376 6 106794211 to 106794246 35 - TSS region transcription start site region 62376
Tssr62377 6 106794592 to 106794616 24 - TSS region transcription start site region 62377
Tssr62378 6 106794617 to 106794636 19 - TSS region transcription start site region 62378
Cpgi17805 6 106799692 to 106800348 656 CpG island CpG island 17805
Tssr62379 6 106800051 to 106800095 44 - TSS region transcription start site region 62379
Gm34873 6 106972266 to 106994666 22400 + lncRNA gene predicted gene, 34873
Gm22418 6 107001452 to 107001558 106 + snRNA gene predicted gene, 22418
Tssr58047 6 107059630 to 107059640 10 + TSS region transcription start site region 58047
Gm6064 6 107093662 to 107094115 453 - pseudogene predicted gene 6064
Tssr62380 6 107103601 to 107103604 3 - TSS region transcription start site region 62380
Gm34933 6 107182063 to 107195642 13579 - lincRNA gene predicted gene, 34933
Gm44399 6 107345776 to 107346001 225 - pseudogene predicted gene, 44399
D6Mit35 6 107426421 to 107426642 221 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 35
Tssr62381 6 107438315 to 107438316 1 - TSS region transcription start site region 62381
Gm27690 6 107448819 to 107448944 125 - miRNA gene predicted gene, 27690
Gm44277 6 107503808 to 107504456 648 + pseudogene predicted gene, 44277
Cpgi17806 6 107529291 to 107530465 1174 CpG island CpG island 17806
Tssr58048 6 107529717 to 107529780 63 + TSS region transcription start site region 58048
Lrrn1 6 107529768 to 107570214 40446 + protein coding gene leucine rich repeat protein 1, neuronal
Tssr58049 6 107529796 to 107529807 11 + TSS region transcription start site region 58049
Tssr58050 6 107530137 to 107530196 59 + TSS region transcription start site region 58050
Cpgi17807 6 107531182 to 107531367 185 CpG island CpG island 17807
Tssr58051 6 107554436 to 107554439 3 + TSS region transcription start site region 58051
4933431M02Rik 6 107627774 to 107632549 4775 + lincRNA gene RIKEN cDNA 4933431M02 gene
D6Mit105 6 107795610 to 107795846 236 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 105
Ichs 6 107795610 to 107795846 236 QTL immediate cutaneous hypersensitivity QTL
Gm35017 6 107802698 to 107815057 12359 - lncRNA gene predicted gene, 35017
Vmn1r-ps37 6 107863308 to 107863746 438 + pseudogene vomeronasal 1 receptor, pseudogene 37
Vmn1r-ps38 6 107864522 to 107865343 821 - pseudogene vomeronasal 1 receptor, pseudogene 38
Tssr62382 6 107877519 to 107877520 1 - TSS region transcription start site region 62382
Gm19177 6 107881092 to 107881673 581 + pseudogene predicted gene, 19177
Gm44279 6 107888681 to 107889152 471 + pseudogene predicted gene, 44279
Tssr58052 6 108065035 to 108065053 18 + TSS region transcription start site region 58052
Setmar 6 108065045 to 108077122 12077 + protein coding gene SET domain without mariner transposase fusion
Sumf1 6 108107028 to 108185582 78554 - protein coding gene sulfatase modifying factor 1
A430109H19Rik 6 108128732 to 108129204 472 unclassified gene RIKEN cDNA A430109H19 gene
Rpl36-ps12 6 108140120 to 108140509 389 - pseudogene ribosomal protein L36, pseudogene 12
Tssr62383 6 108165009 to 108165021 12 - TSS region transcription start site region 62383
Cpgi17808 6 108185083 to 108185685 602 CpG island CpG island 17808
Tssr62384 6 108185552 to 108185587 35 - TSS region transcription start site region 62384
Gm38872 6 108212256 to 108212962 706 - lncRNA gene predicted gene, 38872
Cpgi17809 6 108212837 to 108213447 610 CpG island CpG island 17809
Tssr58053 6 108213086 to 108213123 37 + TSS region transcription start site region 58053
Itpr1 6 108213096 to 108551109 338013 + protein coding gene inositol 1,4,5-trisphosphate receptor 1
Tssr58054 6 108213219 to 108213269 50 + TSS region transcription start site region 58054
Tssr58055 6 108213311 to 108213323 12 + TSS region transcription start site region 58055
Cpgi17810 6 108213838 to 108213993 155 CpG island CpG island 17810
Tssr58056 6 108213928 to 108213944 16 + TSS region transcription start site region 58056
Tssr58057 6 108257910 to 108257915 5 + TSS region transcription start site region 58057
Tssr58058 6 108277106 to 108277124 18 + TSS region transcription start site region 58058
Tssr58059 6 108371740 to 108371743 3 + TSS region transcription start site region 58059
Tssr58060 6 108386727 to 108386742 15 + TSS region transcription start site region 58060