Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:104378360-106130603

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cntn6 6 104492790 to 104863406 370616 + protein coding gene contactin 6
Tssr58028 6 104492954 to 104492965 11 + TSS region transcription start site region 58028
Tssr58029 6 104493049 to 104493111 62 + TSS region transcription start site region 58029
Tssr1956 6 104493132 to 104493156 24 + TSS region transcription start site region 1956
Tssr58030 6 104493161 to 104493216 55 + TSS region transcription start site region 58030
Tssr58031 6 104493220 to 104493230 10 + TSS region transcription start site region 58031
Hdlq11 6 104503360 to 104503555 195 QTL HDL QTL 11
Hcga4b 6 104503360 to 110960065 6456705 QTL home cage activity 4b
Sluc3 6 104503360 to 127042975 22539615 QTL susceptibility to lung cancer 3
Aaj3 6 104503360 to 136423692 31920332 QTL anxiety in A/J 3
D6Mit36 6 104503360 to 104503555 195 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 36
Tmevd1 6 104503360 to 106005603 1502243 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 1
Ots1 6 104503555 to 75447583 -29055972 QTL ovarian teratoma susceptibility 1
Tssr58032 6 104593162 to 104593166 4 + TSS region transcription start site region 58032
Gm38871 6 104600680 to 104609471 8791 + lncRNA gene predicted gene, 38871
Tssr58033 6 104782730 to 104782734 4 + TSS region transcription start site region 58033
Gm40393 6 104865609 to 104876277 10668 + lncRNA gene predicted gene, 40393
Gm5315 6 105063257 to 105065153 1896 - pseudogene predicted gene 5315
Gm23339 6 105232605 to 105232743 138 + snoRNA gene predicted gene, 23339
Tssr58034 6 105334488 to 105334490 2 + TSS region transcription start site region 58034
D6Mit376 6 105354237 to 105354429 192 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-376
Gm25570 6 105399719 to 105399798 79 + miRNA gene predicted gene, 25570
Gm19757 6 105481266 to 105492668 11402 - lincRNA gene predicted gene, 19757
Tssr58035 6 105531502 to 105531504 2 + TSS region transcription start site region 58035
Gm4602 6 105531520 to 105531827 307 + pseudogene predicted gene 4602
Pnhdlc1 6 105564822 to 114368849 8804027 QTL plasma non-HDL cholesterol 1
D6Mit37 6 105564822 to 105565071 249 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 37
Gm15631 6 105673064 to 105677581 4517 - lincRNA gene predicted gene 15631
Cpgi17803 6 105677255 to 105678276 1021 CpG island CpG island 17803
Tssr62365 6 105677569 to 105677603 34 - TSS region transcription start site region 62365
Tssr58036 6 105677643 to 105677738 95 + TSS region transcription start site region 58036
Cntn4 6 105677660 to 106699310 1021650 + protein coding gene contactin 4
Tssr58037 6 105677748 to 105677761 13 + TSS region transcription start site region 58037
Tssr58038 6 105677768 to 105677794 26 + TSS region transcription start site region 58038
Tssr58039 6 105677811 to 105677831 20 + TSS region transcription start site region 58039
Ibdq2 6 106005405 to 120917141 14911736 QTL inflammatory bowel disease QTL 2
Gasa3 6 106005405 to 106005603 198 QTL gastritis type A susceptibility locus 3
D6Mit149 6 106005405 to 106005603 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 149
D6Mit192 6 106058834 to 106059025 191 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 192
Tssr58040 6 106118924 to 106118952 28 + TSS region transcription start site region 58040