Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:10296310-12386315

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D6Mit233 6 10316587 to 10316709 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 233
Gm18421 6 10334296 to 10334920 624 + pseudogene predicted gene, 18421
D6Mit203 6 10444930 to 10445079 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 203
Gm2691 6 10774159 to 10774871 712 - pseudogene predicted gene 2691
Tssr54935 6 10789731 to 10789754 23 + TSS region transcription start site region 54935
Gm18481 6 10801453 to 10802055 602 - pseudogene predicted gene, 18481
Gm43960 6 10804828 to 10809847 5019 + pseudogene predicted gene, 43960
Gm26058 6 10840587 to 10840693 106 - snRNA gene predicted gene, 26058
Gm27894 6 10858427 to 10858518 91 + unclassified non-coding RNA gene predicted gene, 27894
Gm8744 6 10882438 to 10888602 6164 + pseudogene predicted gene 8744
Tssr54936 6 10883311 to 10883338 27 + TSS region transcription start site region 54936
Tssr54937 6 10883676 to 10883691 15 + TSS region transcription start site region 54937
Gm35822 6 10895496 to 10970125 74629 + lincRNA gene predicted gene, 35822
AA545190 6 10971468 to 10974378 2910 - lincRNA gene EST AA545190
Tssr1779 6 11341310 to 11341315 5 + TSS region transcription start site region 1779
Tssr59821 6 11493059 to 11493062 3 - TSS region transcription start site region 59821
D6Mit87 6 11796164 to 11796295 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 87
Ndufa4 6 11900373 to 11907446 7073 - protein coding gene Ndufa4, mitochondrial complex associated
Cpgi17160 6 11907173 to 11908092 919 CpG island CpG island 17160
Tssr59822 6 11907419 to 11907484 65 - TSS region transcription start site region 59822
Tssr54938 6 11907751 to 11907793 42 + TSS region transcription start site region 54938
Phf14 6 11907809 to 12081205 173396 + protein coding gene PHD finger protein 14
Tssr54939 6 11907824 to 11907902 78 + TSS region transcription start site region 54939
Cpgi17161 6 11925665 to 11926658 993 CpG island CpG island 17161
Tssr54940 6 11925869 to 11925941 72 + TSS region transcription start site region 54940
Tssr54941 6 11925958 to 11925969 11 + TSS region transcription start site region 54941
Tssr54942 6 11926128 to 11926195 67 + TSS region transcription start site region 54942
Tssr54943 6 11926758 to 11926790 32 + TSS region transcription start site region 54943
Tssr54944 6 11933380 to 11933405 25 + TSS region transcription start site region 54944
Tssr54945 6 11935188 to 11935189 1 + TSS region transcription start site region 54945
Tssr59823 6 11998347 to 11998351 4 - TSS region transcription start site region 59823
Tssr54946 6 12019831 to 12019834 3 + TSS region transcription start site region 54946
Tssr54947 6 12041374 to 12041395 21 + TSS region transcription start site region 54947
Gm6578 6 12099518 to 12109580 10062 - pseudogene predicted gene 6578
Tssr54948 6 12128561 to 12128563 2 + TSS region transcription start site region 54948
Gm32222 6 12128626 to 12128923 297 + pseudogene predicted gene, 32222
Gm35961 6 12167667 to 12212559 44892 + lncRNA gene predicted gene, 35961
D6Mit234 6 12254797 to 12254946 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 234
Thsd7a 6 12311608 to 12749253 437645 - protein coding gene thrombospondin, type I, domain containing 7A
Tssr59824 6 12315263 to 12315280 17 - TSS region transcription start site region 59824