Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:102295773-104725784

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cntn3 6 102163304 to 102564623 401319 - protein coding gene contactin 3
4930587E11Rik 6 102266100 to 102336674 70574 + antisense lncRNA gene RIKEN cDNA 4930587E11 gene
Gm38870 6 102352498 to 102372868 20370 + lncRNA gene predicted gene, 38870
Tssr62362 6 102553896 to 102553900 4 - TSS region transcription start site region 62362
Cpgi17800 6 102563795 to 102564736 941 CpG island CpG island 17800
Tssr62363 6 102564379 to 102564427 48 - TSS region transcription start site region 62363
Tssr62364 6 102564434 to 102564456 22 - TSS region transcription start site region 62364
Gm44422 6 102658807 to 102660896 2089 - pseudogene predicted gene, 44422
Mir6373 6 102794384 to 102794485 101 + miRNA gene microRNA 6373
Gm26022 6 102862368 to 102862475 107 + snRNA gene predicted gene, 26022
Gm44429 6 102937353 to 102937538 185 - pseudogene predicted gene, 44429
Gm44449 6 103167801 to 103167953 152 + pseudogene predicted gene, 44449
D6Mit250 6 103262639 to 103262732 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 250
Gm44295 6 103279550 to 103279986 436 - pseudogene predicted gene, 44295
Tssr58005 6 103314632 to 103314649 17 + TSS region transcription start site region 58005
Tssr1954 6 103460777 to 103460778 1 + TSS region transcription start site region 1954
Tssr58006 6 103510578 to 103510605 27 + TSS region transcription start site region 58006
Chl1 6 103510581 to 103733038 222457 + protein coding gene cell adhesion molecule L1-like
Tssr58007 6 103510631 to 103510634 3 + TSS region transcription start site region 58007
Tssr58008 6 103510639 to 103510660 21 + TSS region transcription start site region 58008
Tssr58009 6 103510669 to 103510697 28 + TSS region transcription start site region 58009
Cpgi17801 6 103510714 to 103511068 354 CpG island CpG island 17801
Tssr58010 6 103510773 to 103510784 11 + TSS region transcription start site region 58010
Tssr58011 6 103510835 to 103510867 32 + TSS region transcription start site region 58011
Tssr58012 6 103510874 to 103510898 24 + TSS region transcription start site region 58012
Tssr58013 6 103510908 to 103510917 9 + TSS region transcription start site region 58013
Tssr58014 6 103510926 to 103510950 24 + TSS region transcription start site region 58014
Tssr58015 6 103510960 to 103511008 48 + TSS region transcription start site region 58015
Tssr58016 6 103511012 to 103511078 66 + TSS region transcription start site region 58016
Tssr58017 6 103511083 to 103511088 5 + TSS region transcription start site region 58017
Tssr58018 6 103511356 to 103511373 17 + TSS region transcription start site region 58018
Tssr58019 6 103511399 to 103511408 9 + TSS region transcription start site region 58019
Tssr58020 6 103511871 to 103511894 23 + TSS region transcription start site region 58020
Tssr58021 6 103511895 to 103511910 15 + TSS region transcription start site region 58021
Tssr1955 6 103511922 to 103511941 19 + TSS region transcription start site region 1955
Tssr58022 6 103512062 to 103512084 22 + TSS region transcription start site region 58022
Cpgi17802 6 103512089 to 103512532 443 CpG island CpG island 17802
Gm44439 6 103526252 to 103529843 3591 + unclassified gene predicted gene, 44439
Gm7946 6 103550893 to 103551850 957 - pseudogene predicted gene 7946
Gm44441 6 103564356 to 103566830 2474 + unclassified gene predicted gene, 44441
Tssr58023 6 103574599 to 103574602 3 + TSS region transcription start site region 58023
Gm24784 6 103588704 to 103588765 61 + snRNA gene predicted gene, 24784
Gm44440 6 103605521 to 103607893 2372 + unclassified gene predicted gene, 44440
Gm44436 6 103615963 to 103617456 1493 + unclassified gene predicted gene, 44436
Tssr58024 6 103664729 to 103664732 3 + TSS region transcription start site region 58024
Tssr58025 6 103691981 to 103691984 3 + TSS region transcription start site region 58025
Tssr58026 6 103697734 to 103697791 57 + TSS region transcription start site region 58026
D6Mit64 6 103777444 to 103777603 159 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 64
Pabr1 6 103777444 to 136423692 32646248 QTL plasma apolipoprotein B (human) regulator 1
Gm25656 6 103832513 to 103832578 65 - snRNA gene predicted gene, 25656
D6Mit106 6 103906564 to 103906665 101 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 106
Gm21054 6 103964260 to 103964639 379 - pseudogene predicted gene, 21054
Gm18100 6 104300126 to 104300577 451 + pseudogene predicted gene, 18100
Tssr58027 6 104345811 to 104345820 9 + TSS region transcription start site region 58027
Cntn6 6 104492790 to 104863406 370616 + protein coding gene contactin 6
Tssr58028 6 104492954 to 104492965 11 + TSS region transcription start site region 58028
Tssr58029 6 104493049 to 104493111 62 + TSS region transcription start site region 58029
Tssr1956 6 104493132 to 104493156 24 + TSS region transcription start site region 1956
Tssr58030 6 104493161 to 104493216 55 + TSS region transcription start site region 58030
Tssr58031 6 104493220 to 104493230 10 + TSS region transcription start site region 58031
Aaj3 6 104503360 to 136423692 31920332 QTL anxiety in A/J 3
Tmevd1 6 104503360 to 106005603 1502243 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 1
Hcga4b 6 104503360 to 110960065 6456705 QTL home cage activity 4b
Hdlq11 6 104503360 to 104503555 195 QTL HDL QTL 11
D6Mit36 6 104503360 to 104503555 195 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 36
Sluc3 6 104503360 to 127042975 22539615 QTL susceptibility to lung cancer 3
Ots1 6 104503555 to 75447583 -29055972 QTL ovarian teratoma susceptibility 1
Tssr58032 6 104593162 to 104593166 4 + TSS region transcription start site region 58032
Gm38871 6 104600680 to 104609471 8791 + lncRNA gene predicted gene, 38871