Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:100860773-106160784

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp4r2 6 100833634 to 100869934 36300 + protein coding gene protein phosphatase 4, regulatory subunit 2
Cpgi17795 6 100876440 to 100876798 358 CpG island CpG island 17795
4930595O18Rik 6 100922550 to 100923156 606 - unclassified gene RIKEN cDNA 4930595O18 gene
Gm43941 6 100960989 to 100962660 1671 + pseudogene predicted gene, 43941
D6Mit53 6 100977713 to 100977862 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 53
Gm43950 6 101028022 to 101081205 53183 + lincRNA gene predicted gene, 43950
Gm43948 6 101059171 to 101198013 138842 + antisense lncRNA gene predicted gene, 43948
Ewc4 6 101122513 to 101122513 0 QTL ethanol withdrawal and consumption 4
Gm43942 6 101144292 to 101147150 2858 + unclassified gene predicted gene, 43942
Gm19726 6 101146240 to 101146479 239 - pseudogene predicted gene, 19726
Pdzrn3 6 101149609 to 101377897 228288 - protein coding gene PDZ domain containing RING finger 3
Tssr62349 6 101150341 to 101150352 11 - TSS region transcription start site region 62349
Cpgi17796 6 101150739 to 101151996 1257 CpG island CpG island 17796
Tssr58003 6 101198521 to 101198545 24 + TSS region transcription start site region 58003
Gm26911 6 101198569 to 101220141 21572 + antisense lncRNA gene predicted gene, 26911
Cpgi17797 6 101198596 to 101199244 648 CpG island CpG island 17797
Tssr62350 6 101199020 to 101199060 40 - TSS region transcription start site region 62350
Tssr62351 6 101199079 to 101199090 11 - TSS region transcription start site region 62351
Tssr62352 6 101199196 to 101199200 4 - TSS region transcription start site region 62352
Tssr62353 6 101256825 to 101256826 1 - TSS region transcription start site region 62353
Gm33934 6 101266884 to 101291507 24623 + lncRNA gene predicted gene, 33934
Tssr58004 6 101272013 to 101272029 16 + TSS region transcription start site region 58004
9530086O07Rik 6 101285826 to 101288510 2684 - unclassified gene RIKEN cDNA 9530086O07 gene
Tssr62354 6 101297218 to 101297220 2 - TSS region transcription start site region 62354
Gm43953 6 101325339 to 101328205 2866 - unclassified gene predicted gene, 43953
Tssr62355 6 101337909 to 101337913 4 - TSS region transcription start site region 62355
Gm43947 6 101344892 to 101345850 958 - unclassified gene predicted gene, 43947
Gm43946 6 101347945 to 101348830 885 - unclassified gene predicted gene, 43946
Cpgi17798 6 101376653 to 101378270 1617 CpG island CpG island 17798
Tssr62356 6 101377228 to 101377244 16 - TSS region transcription start site region 62356
Tssr62357 6 101377254 to 101377267 13 - TSS region transcription start site region 62357
Tssr62358 6 101377376 to 101377388 12 - TSS region transcription start site region 62358
Tssr62359 6 101377404 to 101377415 11 - TSS region transcription start site region 62359
Tssr62360 6 101378002 to 101378016 14 - TSS region transcription start site region 62360
D6Mit65 6 101387523 to 101387624 101 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 65
Gm34335 6 101519514 to 101539690 20176 + lncRNA gene predicted gene, 34335
Gm44169 6 101519655 to 101537292 17637 + lincRNA gene predicted gene, 44169
Gm44171 6 101538753 to 101540861 2108 + unclassified gene predicted gene, 44171
D6Mit381 6 101566947 to 101567091 144 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-381
Gm32453 6 101652234 to 101652689 455 + pseudogene predicted gene, 32453
Gm9871 6 101774249 to 101801982 27733 + lincRNA gene predicted gene 9871
Gm44176 6 101841195 to 101848050 6855 + lincRNA gene predicted gene, 44176
Cpgi17799 6 101854712 to 101854944 232 CpG island CpG island 17799
Gm44177 6 101913273 to 101915939 2666 + unclassified gene predicted gene, 44177
Gm7924 6 102071466 to 102072250 784 + pseudogene predicted gene 7924
Cntn3 6 102163304 to 102564623 401319 - protein coding gene contactin 3
Gm44189 6 102174030 to 102177112 3082 - unclassified gene predicted gene, 44189
Tssr62361 6 102265696 to 102265699 3 - TSS region transcription start site region 62361
4930587E11Rik 6 102266100 to 102336674 70574 + antisense lncRNA gene RIKEN cDNA 4930587E11 gene
Gm38870 6 102352498 to 102372868 20370 + lncRNA gene predicted gene, 38870
Tssr62362 6 102553896 to 102553900 4 - TSS region transcription start site region 62362
Cpgi17800 6 102563795 to 102564736 941 CpG island CpG island 17800
Tssr62363 6 102564379 to 102564427 48 - TSS region transcription start site region 62363
Tssr62364 6 102564434 to 102564456 22 - TSS region transcription start site region 62364
Gm44422 6 102658807 to 102660896 2089 - pseudogene predicted gene, 44422
Mir6373 6 102794384 to 102794485 101 + miRNA gene microRNA 6373
Gm26022 6 102862368 to 102862475 107 + snRNA gene predicted gene, 26022
Gm44429 6 102937353 to 102937538 185 - pseudogene predicted gene, 44429
Gm44449 6 103167801 to 103167953 152 + pseudogene predicted gene, 44449
D6Mit250 6 103262639 to 103262732 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 250
Gm44295 6 103279550 to 103279986 436 - pseudogene predicted gene, 44295
Tssr58005 6 103314632 to 103314649 17 + TSS region transcription start site region 58005
Tssr1954 6 103460777 to 103460778 1 + TSS region transcription start site region 1954
Tssr58006 6 103510578 to 103510605 27 + TSS region transcription start site region 58006
Chl1 6 103510581 to 103733038 222457 + protein coding gene cell adhesion molecule L1-like
Tssr58007 6 103510631 to 103510634 3 + TSS region transcription start site region 58007
Tssr58008 6 103510639 to 103510660 21 + TSS region transcription start site region 58008
Tssr58009 6 103510669 to 103510697 28 + TSS region transcription start site region 58009
Cpgi17801 6 103510714 to 103511068 354 CpG island CpG island 17801
Tssr58010 6 103510773 to 103510784 11 + TSS region transcription start site region 58010
Tssr58011 6 103510835 to 103510867 32 + TSS region transcription start site region 58011
Tssr58012 6 103510874 to 103510898 24 + TSS region transcription start site region 58012
Tssr58013 6 103510908 to 103510917 9 + TSS region transcription start site region 58013
Tssr58014 6 103510926 to 103510950 24 + TSS region transcription start site region 58014
Tssr58015 6 103510960 to 103511008 48 + TSS region transcription start site region 58015
Tssr58016 6 103511012 to 103511078 66 + TSS region transcription start site region 58016
Tssr58017 6 103511083 to 103511088 5 + TSS region transcription start site region 58017
Tssr58018 6 103511356 to 103511373 17 + TSS region transcription start site region 58018
Tssr58019 6 103511399 to 103511408 9 + TSS region transcription start site region 58019
Tssr58020 6 103511871 to 103511894 23 + TSS region transcription start site region 58020
Tssr58021 6 103511895 to 103511910 15 + TSS region transcription start site region 58021
Tssr1955 6 103511922 to 103511941 19 + TSS region transcription start site region 1955
Tssr58022 6 103512062 to 103512084 22 + TSS region transcription start site region 58022
Cpgi17802 6 103512089 to 103512532 443 CpG island CpG island 17802
Gm44439 6 103526252 to 103529843 3591 + unclassified gene predicted gene, 44439
Gm7946 6 103550893 to 103551850 957 - pseudogene predicted gene 7946
Gm44441 6 103564356 to 103566830 2474 + unclassified gene predicted gene, 44441
Tssr58023 6 103574599 to 103574602 3 + TSS region transcription start site region 58023
Gm24784 6 103588704 to 103588765 61 + snRNA gene predicted gene, 24784
Gm44440 6 103605521 to 103607893 2372 + unclassified gene predicted gene, 44440
Gm44436 6 103615963 to 103617456 1493 + unclassified gene predicted gene, 44436
Tssr58024 6 103664729 to 103664732 3 + TSS region transcription start site region 58024
Tssr58025 6 103691981 to 103691984 3 + TSS region transcription start site region 58025
Tssr58026 6 103697734 to 103697791 57 + TSS region transcription start site region 58026
Pabr1 6 103777444 to 136423692 32646248 QTL plasma apolipoprotein B (human) regulator 1
D6Mit64 6 103777444 to 103777603 159 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 64
Gm25656 6 103832513 to 103832578 65 - snRNA gene predicted gene, 25656
D6Mit106 6 103906564 to 103906665 101 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 106
Gm21054 6 103964260 to 103964639 379 - pseudogene predicted gene, 21054
Gm18100 6 104300126 to 104300577 451 + pseudogene predicted gene, 18100
Tssr58027 6 104345811 to 104345820 9 + TSS region transcription start site region 58027
Cntn6 6 104492790 to 104863406 370616 + protein coding gene contactin 6
Tssr58028 6 104492954 to 104492965 11 + TSS region transcription start site region 58028
Tssr58029 6 104493049 to 104493111 62 + TSS region transcription start site region 58029
Tssr1956 6 104493132 to 104493156 24 + TSS region transcription start site region 1956
Tssr58030 6 104493161 to 104493216 55 + TSS region transcription start site region 58030
Tssr58031 6 104493220 to 104493230 10 + TSS region transcription start site region 58031
Aaj3 6 104503360 to 136423692 31920332 QTL anxiety in A/J 3
Hdlq11 6 104503360 to 104503555 195 QTL HDL QTL 11
D6Mit36 6 104503360 to 104503555 195 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 36
Tmevd1 6 104503360 to 106005603 1502243 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 1
Sluc3 6 104503360 to 127042975 22539615 QTL susceptibility to lung cancer 3
Hcga4b 6 104503360 to 110960065 6456705 QTL home cage activity 4b
Ots1 6 104503555 to 75447583 -29055972 QTL ovarian teratoma susceptibility 1
Tssr58032 6 104593162 to 104593166 4 + TSS region transcription start site region 58032
Gm38871 6 104600680 to 104609471 8791 + lncRNA gene predicted gene, 38871
Tssr58033 6 104782730 to 104782734 4 + TSS region transcription start site region 58033
Gm40393 6 104865609 to 104876277 10668 + lncRNA gene predicted gene, 40393
Gm5315 6 105063257 to 105065153 1896 - pseudogene predicted gene 5315
Gm23339 6 105232605 to 105232743 138 + snoRNA gene predicted gene, 23339
Tssr58034 6 105334488 to 105334490 2 + TSS region transcription start site region 58034
D6Mit376 6 105354237 to 105354429 192 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-376
Gm25570 6 105399719 to 105399798 79 + miRNA gene predicted gene, 25570
Gm19757 6 105481266 to 105492668 11402 - lincRNA gene predicted gene, 19757
Tssr58035 6 105531502 to 105531504 2 + TSS region transcription start site region 58035
Gm4602 6 105531520 to 105531827 307 + pseudogene predicted gene 4602
D6Mit37 6 105564822 to 105565071 249 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 37
Pnhdlc1 6 105564822 to 114368849 8804027 QTL plasma non-HDL cholesterol 1
Gm15631 6 105673064 to 105677581 4517 - lincRNA gene predicted gene 15631
Cpgi17803 6 105677255 to 105678276 1021 CpG island CpG island 17803
Tssr62365 6 105677569 to 105677603 34 - TSS region transcription start site region 62365
Tssr58036 6 105677643 to 105677738 95 + TSS region transcription start site region 58036
Cntn4 6 105677660 to 106699310 1021650 + protein coding gene contactin 4
Tssr58037 6 105677748 to 105677761 13 + TSS region transcription start site region 58037
Tssr58038 6 105677768 to 105677794 26 + TSS region transcription start site region 58038
Tssr58039 6 105677811 to 105677831 20 + TSS region transcription start site region 58039
Gasa3 6 106005405 to 106005603 198 QTL gastritis type A susceptibility locus 3
Ibdq2 6 106005405 to 120917141 14911736 QTL inflammatory bowel disease QTL 2
D6Mit149 6 106005405 to 106005603 198 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 149
D6Mit192 6 106058834 to 106059025 191 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 192
Tssr58040 6 106118924 to 106118952 28 + TSS region transcription start site region 58040