Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:100402376-102352388

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr57989 6 100451026 to 100451042 16 + TSS region transcription start site region 57989
Tssr57990 6 100451046 to 100451057 11 + TSS region transcription start site region 57990
Gm38868 6 100469239 to 100471237 1998 + lncRNA gene predicted gene, 38868
Gm23234 6 100494681 to 100494814 133 - snoRNA gene predicted gene, 23234
Gm44107 6 100498515 to 100499914 1399 + lincRNA gene predicted gene, 44107
Gm33741 6 100504191 to 100510029 5838 - lncRNA gene predicted gene, 33741
Tssr57991 6 100527350 to 100527395 45 + TSS region transcription start site region 57991
1700049E22Rik 6 100527400 to 100533426 6026 + lincRNA gene RIKEN cDNA 1700049E22 gene
Cpgi17789 6 100562811 to 100564193 1382 CpG island CpG island 17789
5730433K22Rik 6 100568257 to 100569731 1474 unclassified gene RIKEN cDNA 5730433K22 gene
Shq1 6 100571811 to 100671175 99364 - protein coding gene SHQ1 homolog (S. cerevisiae)
Tssr57992 6 100604656 to 100604663 7 + TSS region transcription start site region 57992
Gm6565 6 100604683 to 100605120 437 + pseudogene predicted gene 6565
Gm44108 6 100626519 to 100626940 421 - pseudogene predicted gene, 44108
Gm44116 6 100660939 to 100662463 1524 - unclassified gene predicted gene, 44116
Cpgi17790 6 100670487 to 100671411 924 CpG island CpG island 17790
Tssr57993 6 100670688 to 100670698 10 + TSS region transcription start site region 57993
Tssr62347 6 100671092 to 100671112 20 - TSS region transcription start site region 62347
Tssr62348 6 100671126 to 100671178 52 - TSS region transcription start site region 62348
Gxylt2 6 100704290 to 100805686 101396 + protein coding gene glucoside xylosyltransferase 2
Cpgi17791 6 100704360 to 100705396 1036 CpG island CpG island 17791
Tssr57994 6 100704709 to 100704742 33 + TSS region transcription start site region 57994
Tssr57995 6 100704743 to 100704760 17 + TSS region transcription start site region 57995
Gm15576 6 100726234 to 100726816 582 + pseudogene predicted gene 15576
Tssr57996 6 100760259 to 100760274 15 + TSS region transcription start site region 57996
Cpgi17792 6 100782980 to 100783320 340 CpG island CpG island 17792
Gm19692 6 100791829 to 100793912 2083 + unclassified gene predicted gene, 19692
Cpgi17793 6 100800626 to 100800794 168 CpG island CpG island 17793
Tssr57997 6 100800903 to 100800941 38 + TSS region transcription start site region 57997
Cpgi17794 6 100833235 to 100834444 1209 CpG island CpG island 17794
Tssr57998 6 100833606 to 100833663 57 + TSS region transcription start site region 57998
Ppp4r2 6 100833634 to 100869934 36300 + protein coding gene protein phosphatase 4, regulatory subunit 2
Tssr57999 6 100834097 to 100834117 20 + TSS region transcription start site region 57999
Tssr58000 6 100835281 to 100835287 6 + TSS region transcription start site region 58000
Tssr58001 6 100839122 to 100839149 27 + TSS region transcription start site region 58001
Tssr58002 6 100839153 to 100839157 4 + TSS region transcription start site region 58002
Cpgi17795 6 100876440 to 100876798 358 CpG island CpG island 17795
4930595O18Rik 6 100922550 to 100923156 606 - unclassified gene RIKEN cDNA 4930595O18 gene
Gm43941 6 100960989 to 100962660 1671 + pseudogene predicted gene, 43941
D6Mit53 6 100977713 to 100977862 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 53
Gm43950 6 101028022 to 101081205 53183 + lincRNA gene predicted gene, 43950
Gm43948 6 101059171 to 101198013 138842 + antisense lncRNA gene predicted gene, 43948
Ewc4 6 101122513 to 101122513 0 QTL ethanol withdrawal and consumption 4
Gm43942 6 101144292 to 101147150 2858 + unclassified gene predicted gene, 43942
Gm19726 6 101146240 to 101146479 239 - pseudogene predicted gene, 19726
Pdzrn3 6 101149609 to 101377897 228288 - protein coding gene PDZ domain containing RING finger 3
Tssr62349 6 101150341 to 101150352 11 - TSS region transcription start site region 62349
Cpgi17796 6 101150739 to 101151996 1257 CpG island CpG island 17796
Tssr58003 6 101198521 to 101198545 24 + TSS region transcription start site region 58003
Gm26911 6 101198569 to 101220141 21572 + antisense lncRNA gene predicted gene, 26911
Cpgi17797 6 101198596 to 101199244 648 CpG island CpG island 17797
Tssr62350 6 101199020 to 101199060 40 - TSS region transcription start site region 62350
Tssr62351 6 101199079 to 101199090 11 - TSS region transcription start site region 62351
Tssr62352 6 101199196 to 101199200 4 - TSS region transcription start site region 62352
Tssr62353 6 101256825 to 101256826 1 - TSS region transcription start site region 62353
Gm33934 6 101266884 to 101291507 24623 + lncRNA gene predicted gene, 33934
Tssr58004 6 101272013 to 101272029 16 + TSS region transcription start site region 58004
9530086O07Rik 6 101285826 to 101288510 2684 - unclassified gene RIKEN cDNA 9530086O07 gene
Tssr62354 6 101297218 to 101297220 2 - TSS region transcription start site region 62354
Gm43953 6 101325339 to 101328205 2866 - unclassified gene predicted gene, 43953
Tssr62355 6 101337909 to 101337913 4 - TSS region transcription start site region 62355
Gm43947 6 101344892 to 101345850 958 - unclassified gene predicted gene, 43947
Gm43946 6 101347945 to 101348830 885 - unclassified gene predicted gene, 43946
Cpgi17798 6 101376653 to 101378270 1617 CpG island CpG island 17798
Tssr62356 6 101377228 to 101377244 16 - TSS region transcription start site region 62356
Tssr62357 6 101377254 to 101377267 13 - TSS region transcription start site region 62357
Tssr62358 6 101377376 to 101377388 12 - TSS region transcription start site region 62358
Tssr62359 6 101377404 to 101377415 11 - TSS region transcription start site region 62359
Tssr62360 6 101378002 to 101378016 14 - TSS region transcription start site region 62360
D6Mit65 6 101387523 to 101387624 101 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 65
Gm34335 6 101519514 to 101539690 20176 + lncRNA gene predicted gene, 34335
Gm44169 6 101519655 to 101537292 17637 + lincRNA gene predicted gene, 44169
Gm44171 6 101538753 to 101540861 2108 + unclassified gene predicted gene, 44171
D6Mit381 6 101566947 to 101567091 144 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-381
Gm32453 6 101652234 to 101652689 455 + pseudogene predicted gene, 32453
Gm9871 6 101774249 to 101801982 27733 + lincRNA gene predicted gene 9871
Gm44176 6 101841195 to 101848050 6855 + lincRNA gene predicted gene, 44176
Cpgi17799 6 101854712 to 101854944 232 CpG island CpG island 17799
Gm44177 6 101913273 to 101915939 2666 + unclassified gene predicted gene, 44177
Gm7924 6 102071466 to 102072250 784 + pseudogene predicted gene 7924
Cntn3 6 102163304 to 102564623 401319 - protein coding gene contactin 3
Gm44189 6 102174030 to 102177112 3082 - unclassified gene predicted gene, 44189
Tssr62361 6 102265696 to 102265699 3 - TSS region transcription start site region 62361
4930587E11Rik 6 102266100 to 102336674 70574 + antisense lncRNA gene RIKEN cDNA 4930587E11 gene