MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 6:100387400-100673426

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tssr57989	6	100451026 to 100451042	16	+	TSS region	transcription start site region 57989
Tssr57990	6	100451046 to 100451057	11	+	TSS region	transcription start site region 57990
Gm38868	6	100469239 to 100471237	1998	+	lncRNA gene	predicted gene, 38868
Gm23234	6	100494681 to 100494814	133	-	snoRNA gene	predicted gene, 23234
Gm44107	6	100498515 to 100499914	1399	+	lincRNA gene	predicted gene, 44107
Gm33741	6	100504191 to 100510029	5838	-	lncRNA gene	predicted gene, 33741
Tssr57991	6	100527350 to 100527395	45	+	TSS region	transcription start site region 57991
1700049E22Rik	6	100527400 to 100533426	6026	+	lincRNA gene	RIKEN cDNA 1700049E22 gene
Cpgi17789	6	100562811 to 100564193	1382		CpG island	CpG island 17789
5730433K22Rik	6	100568257 to 100569731	1474		unclassified gene	RIKEN cDNA 5730433K22 gene
Shq1	6	100571811 to 100671175	99364	-	protein coding gene	SHQ1 homolog (S. cerevisiae)
Tssr57992	6	100604656 to 100604663	7	+	TSS region	transcription start site region 57992
Gm6565	6	100604683 to 100605120	437	+	pseudogene	predicted gene 6565
Gm44108	6	100626519 to 100626940	421	-	pseudogene	predicted gene, 44108
Gm44116	6	100660939 to 100662463	1524	-	unclassified gene	predicted gene, 44116
Cpgi17790	6	100670487 to 100671411	924		CpG island	CpG island 17790
Tssr57993	6	100670688 to 100670698	10	+	TSS region	transcription start site region 57993
Tssr62347	6	100671092 to 100671112	20	-	TSS region	transcription start site region 62347
Tssr62348	6	100671126 to 100671178	52	-	TSS region	transcription start site region 62348