Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:100049683-101160120

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D6Mit38 6 100057020 to 100057179 159 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 38
ssl 6 100057020 to 114282207 14225187 heritable phenotypic marker small swaying lethal
Gm33243 6 100061897 to 100087243 25346 + lncRNA gene predicted gene, 33243
Gm38866 6 100095025 to 100099614 4589 + lncRNA gene predicted gene, 38866
Gm33297 6 100099616 to 100101412 1796 + lncRNA gene predicted gene, 33297
2010109P13Rik 6 100143423 to 100143814 391 - lncRNA gene RIKEN cDNA 2010109P13 gene
Gm33448 6 100155134 to 100181732 26598 - lncRNA gene predicted gene, 33448
Cpgi17785 6 100155655 to 100156184 529 CpG island CpG island 17785
Cpgi17786 6 100163213 to 100163367 154 CpG island CpG island 17786
Cpgi17787 6 100170855 to 100171048 193 CpG island CpG island 17787
Tssr62342 6 100181717 to 100181733 16 - TSS region transcription start site region 62342
Gm33554 6 100196003 to 100201228 5225 + lncRNA gene predicted gene, 33554
Gm38867 6 100205328 to 100209141 3813 + lncRNA gene predicted gene, 38867
Rybp 6 100228565 to 100287358 58793 - protein coding gene RING1 and YY1 binding protein
Tssr62343 6 100244143 to 100244147 4 - TSS region transcription start site region 62343
Gm18422 6 100247229 to 100248261 1032 + pseudogene predicted gene, 18422
Gm44045 6 100256708 to 100259227 2519 - unclassified gene predicted gene, 44045
Gm44044 6 100272610 to 100273698 1088 - unclassified gene predicted gene, 44044
Tssr62344 6 100286323 to 100286327 4 - TSS region transcription start site region 62344
Cpgi17788 6 100286390 to 100288374 1984 CpG island CpG island 17788
Tssr62345 6 100287444 to 100287465 21 - TSS region transcription start site region 62345
Tssr62346 6 100287479 to 100287501 22 - TSS region transcription start site region 62346
Tssr57989 6 100451026 to 100451042 16 + TSS region transcription start site region 57989
Tssr57990 6 100451046 to 100451057 11 + TSS region transcription start site region 57990
Gm38868 6 100469239 to 100471237 1998 + lncRNA gene predicted gene, 38868
Gm23234 6 100494681 to 100494814 133 - snoRNA gene predicted gene, 23234
Gm44107 6 100498515 to 100499914 1399 + lincRNA gene predicted gene, 44107
Gm33741 6 100504191 to 100510029 5838 - lncRNA gene predicted gene, 33741
Tssr57991 6 100527350 to 100527395 45 + TSS region transcription start site region 57991
1700049E22Rik 6 100527400 to 100533426 6026 + lincRNA gene RIKEN cDNA 1700049E22 gene
Cpgi17789 6 100562811 to 100564193 1382 CpG island CpG island 17789
5730433K22Rik 6 100568257 to 100569731 1474 unclassified gene RIKEN cDNA 5730433K22 gene
Shq1 6 100571811 to 100671175 99364 - protein coding gene SHQ1 homolog (S. cerevisiae)
Tssr57992 6 100604656 to 100604663 7 + TSS region transcription start site region 57992
Gm6565 6 100604683 to 100605120 437 + pseudogene predicted gene 6565
Gm44108 6 100626519 to 100626940 421 - pseudogene predicted gene, 44108
Gm44116 6 100660939 to 100662463 1524 - unclassified gene predicted gene, 44116
Cpgi17790 6 100670487 to 100671411 924 CpG island CpG island 17790
Tssr57993 6 100670688 to 100670698 10 + TSS region transcription start site region 57993
Tssr62347 6 100671092 to 100671112 20 - TSS region transcription start site region 62347
Tssr62348 6 100671126 to 100671178 52 - TSS region transcription start site region 62348
Gxylt2 6 100704290 to 100805686 101396 + protein coding gene glucoside xylosyltransferase 2
Cpgi17791 6 100704360 to 100705396 1036 CpG island CpG island 17791
Tssr57994 6 100704709 to 100704742 33 + TSS region transcription start site region 57994
Tssr57995 6 100704743 to 100704760 17 + TSS region transcription start site region 57995
Gm15576 6 100726234 to 100726816 582 + pseudogene predicted gene 15576
Tssr57996 6 100760259 to 100760274 15 + TSS region transcription start site region 57996
Cpgi17792 6 100782980 to 100783320 340 CpG island CpG island 17792
Gm19692 6 100791829 to 100793912 2083 + unclassified gene predicted gene, 19692
Cpgi17793 6 100800626 to 100800794 168 CpG island CpG island 17793
Tssr57997 6 100800903 to 100800941 38 + TSS region transcription start site region 57997
Cpgi17794 6 100833235 to 100834444 1209 CpG island CpG island 17794
Tssr57998 6 100833606 to 100833663 57 + TSS region transcription start site region 57998
Ppp4r2 6 100833634 to 100869934 36300 + protein coding gene protein phosphatase 4, regulatory subunit 2
Tssr57999 6 100834097 to 100834117 20 + TSS region transcription start site region 57999
Tssr58000 6 100835281 to 100835287 6 + TSS region transcription start site region 58000
Tssr58001 6 100839122 to 100839149 27 + TSS region transcription start site region 58001
Tssr58002 6 100839153 to 100839157 4 + TSS region transcription start site region 58002
Cpgi17795 6 100876440 to 100876798 358 CpG island CpG island 17795
4930595O18Rik 6 100922550 to 100923156 606 - unclassified gene RIKEN cDNA 4930595O18 gene
Gm43941 6 100960989 to 100962660 1671 + pseudogene predicted gene, 43941
D6Mit53 6 100977713 to 100977862 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 53
Gm43950 6 101028022 to 101081205 53183 + lincRNA gene predicted gene, 43950
Gm43948 6 101059171 to 101198013 138842 + antisense lncRNA gene predicted gene, 43948
Ewc4 6 101122513 to 101122513 0 QTL ethanol withdrawal and consumption 4
Gm43942 6 101144292 to 101147150 2858 + unclassified gene predicted gene, 43942
Gm19726 6 101146240 to 101146479 239 - pseudogene predicted gene, 19726
Pdzrn3 6 101149609 to 101377897 228288 - protein coding gene PDZ domain containing RING finger 3
Tssr62349 6 101150341 to 101150352 11 - TSS region transcription start site region 62349
Cpgi17796 6 101150739 to 101151996 1257 CpG island CpG island 17796