Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:99710248-100030323

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A930011G23Rik 5 99297244 to 99729060 431816 - lncRNA gene RIKEN cDNA A930011G23 gene
Gm16226 5 99699185 to 99716008 16823 + antisense lncRNA gene predicted gene 16226
Tssr52054 5 99721982 to 99721986 4 - TSS region transcription start site region 52054
Cpgi16098 5 99728173 to 99729709 1536 CpG island CpG island 16098
Tssr52055 5 99728801 to 99728812 11 - TSS region transcription start site region 52055
Tssr52056 5 99728856 to 99728882 26 - TSS region transcription start site region 52056
Tssr52057 5 99729039 to 99729112 73 - TSS region transcription start site region 52057
Tssr52058 5 99729215 to 99729227 12 - TSS region transcription start site region 52058
Gm38413 5 99730854 to 99753973 23119 - lincRNA gene predicted gene, 38413
D5Mit238 5 99748277 to 99748415 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 238
Cpgi16099 5 99775473 to 99775863 390 CpG island CpG island 16099
Gm43249 5 99839533 to 99839990 457 - pseudogene predicted gene 43249
Gm42126 5 99851176 to 99853956 2780 - lncRNA gene predicted gene, 42126
Cpgi16100 5 99868386 to 99868730 344 CpG island CpG island 16100
Gm26252 5 99870248 to 99870323 75 + snoRNA gene predicted gene, 26252
Cpgi16101 5 99906048 to 99906704 656 CpG island CpG island 16101
Tssr47471 5 99906254 to 99906284 30 + TSS region transcription start site region 47471
Vamp9 5 99906254 to 99951092 44838 + protein coding gene vesicle-associated membrane protein 9
Gm22838 5 99928283 to 99928381 98 - snRNA gene predicted gene, 22838
4930535B17Rik 5 99947313 to 99948225 912 unclassified gene RIKEN cDNA 4930535B17 gene
Hnrnpd 5 99955935 to 99978938 23003 - protein coding gene heterogeneous nuclear ribonucleoprotein D
Tssr52059 5 99963771 to 99963794 23 - TSS region transcription start site region 52059
Tssr52060 5 99964742 to 99964761 19 - TSS region transcription start site region 52060
Tssr52061 5 99964791 to 99964807 16 - TSS region transcription start site region 52061
Tssr52062 5 99967246 to 99967276 30 - TSS region transcription start site region 52062
Gm42127 5 99967904 to 99976527 8623 - lncRNA gene predicted gene, 42127
Tssr52063 5 99976557 to 99976593 36 - TSS region transcription start site region 52063
Cpgi16102 5 99977659 to 99979559 1900 CpG island CpG island 16102
Gm17092 5 99977686 to 99978858 1172 + antisense lncRNA gene predicted gene 17092
Tssr47472 5 99978503 to 99978570 67 + TSS region transcription start site region 47472
Tssr47473 5 99978571 to 99978633 62 + TSS region transcription start site region 47473
Tssr47474 5 99978669 to 99978684 15 + TSS region transcription start site region 47474
Tssr52064 5 99978848 to 99978859 11 - TSS region transcription start site region 52064
Tssr52065 5 99978902 to 99978913 11 - TSS region transcription start site region 52065
Tssr52066 5 99978914 to 99978966 52 - TSS region transcription start site region 52066
4930524J08Rik 5 99979061 to 99979663 602 + protein coding gene RIKEN cDNA 4930524J08 gene
D5Mit90 5 100023113 to 100023227 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 90
Hmtb5 5 126805880 to 99801563 -27004317 QTL hemostasis and thrombosis bleeding time 5