Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:99110544-99620558

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43251 5 99039063 to 99171421 132358 - lincRNA gene predicted gene 43251
Tssr52024 5 99215395 to 99215421 26 - TSS region transcription start site region 52024
Tssr52025 5 99215642 to 99215662 20 - TSS region transcription start site region 52025
Rasgef1b 5 99217420 to 99252927 35507 - protein coding gene RasGEF domain family, member 1B
Tssr52026 5 99217759 to 99217760 1 - TSS region transcription start site region 52026
Tssr52027 5 99217798 to 99217800 2 - TSS region transcription start site region 52027
Tssr52028 5 99217832 to 99217843 11 - TSS region transcription start site region 52028
Tssr47456 5 99217833 to 99217849 16 + TSS region transcription start site region 47456
Tssr52029 5 99217997 to 99218001 4 - TSS region transcription start site region 52029
Tssr52030 5 99218333 to 99218339 6 - TSS region transcription start site region 52030
Tssr52031 5 99218430 to 99218441 11 - TSS region transcription start site region 52031
Tssr52032 5 99218539 to 99218553 14 - TSS region transcription start site region 52032
Tssr52033 5 99223547 to 99223559 12 - TSS region transcription start site region 52033
Tssr52034 5 99223583 to 99223614 31 - TSS region transcription start site region 52034
Tssr52035 5 99223632 to 99223659 27 - TSS region transcription start site region 52035
Tssr52036 5 99229447 to 99229473 26 - TSS region transcription start site region 52036
Tssr52037 5 99240395 to 99240406 11 - TSS region transcription start site region 52037
Tssr52038 5 99240817 to 99240824 7 - TSS region transcription start site region 52038
Tssr52039 5 99243214 to 99243252 38 - TSS region transcription start site region 52039
Tssr52040 5 99243282 to 99243284 2 - TSS region transcription start site region 52040
Tssr52041 5 99248553 to 99248569 16 - TSS region transcription start site region 52041
Tssr52042 5 99248594 to 99248607 13 - TSS region transcription start site region 52042
Tssr52043 5 99249679 to 99249690 11 - TSS region transcription start site region 52043
Tssr52044 5 99249813 to 99249828 15 - TSS region transcription start site region 52044
Tssr52045 5 99250235 to 99250273 38 - TSS region transcription start site region 52045
Tssr52046 5 99251509 to 99251529 20 - TSS region transcription start site region 52046
Cpgi16094 5 99251599 to 99252107 508 CpG island CpG island 16094
Cpgi16095 5 99252352 to 99253369 1017 CpG island CpG island 16095
Tssr52047 5 99252810 to 99252824 14 - TSS region transcription start site region 52047
Tssr52048 5 99252839 to 99252854 15 - TSS region transcription start site region 52048
Gm35394 5 99274095 to 99279284 5189 + lincRNA gene predicted gene, 35394
Tssr47457 5 99274651 to 99274664 13 + TSS region transcription start site region 47457
Cpgi16096 5 99280000 to 99280335 335 CpG island CpG island 16096
A930011G23Rik 5 99297244 to 99729060 431816 - lncRNA gene RIKEN cDNA A930011G23 gene
D5Mit91 5 99307426 to 99307631 205 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 91
Tssr52049 5 99327093 to 99327113 20 - TSS region transcription start site region 52049
Tssr52050 5 99327187 to 99327234 47 - TSS region transcription start site region 52050
Tssr47458 5 99336728 to 99336741 13 + TSS region transcription start site region 47458
Tssr47459 5 99336743 to 99336754 11 + TSS region transcription start site region 47459
Tssr47460 5 99336760 to 99336768 8 + TSS region transcription start site region 47460
Tssr47461 5 99336776 to 99336784 8 + TSS region transcription start site region 47461
Tssr52051 5 99363465 to 99363470 5 - TSS region transcription start site region 52051
Tssr47462 5 99365544 to 99365558 14 + TSS region transcription start site region 47462
Gm35314 5 99370273 to 99387829 17556 + lncRNA gene predicted gene, 35314
Tssr47463 5 99385613 to 99385616 3 + TSS region transcription start site region 47463
Cpgi16097 5 99416958 to 99417443 485 CpG island CpG island 16097
Gm42125 5 99480347 to 99488136 7789 - lncRNA gene predicted gene, 42125
Gm35253 5 99488246 to 99498914 10668 - lncRNA gene predicted gene, 35253
Tssr47464 5 99508373 to 99508392 19 + TSS region transcription start site region 47464
Gm35172 5 99508389 to 99511037 2648 + lincRNA gene predicted gene, 35172
Gm16227 5 99509944 to 99510682 738 - sense intronic lncRNA gene predicted gene 16227
D5Mit401 5 99514143 to 99514366 223 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 401
Tssr52052 5 99609872 to 99609873 1 - TSS region transcription start site region 52052
Gm16228 5 99610625 to 99611433 808 - pseudogene predicted gene 16228
Tssr47465 5 99611788 to 99611795 7 + TSS region transcription start site region 47465
Tssr52053 5 99617913 to 99617917 4 - TSS region transcription start site region 52053
Bbaa3 5 112317856 to 99307426 -13010430 QTL B.burgdorferi-associated arthritis 3