Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:98328763-99558773

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16089 5 98329159 to 98329734 575 CpG island CpG island 16089
Tssr47447 5 98329298 to 98329350 52 + TSS region transcription start site region 47447
Cfap299 5 98329304 to 98802047 472743 + protein coding gene cilia and flagella associated protein 299
Cpgi16090 5 98330423 to 98330657 234 CpG island CpG island 16090
E030032P16Rik 5 98346394 to 98349324 2930 + unclassified gene RIKEN cDNA E030032P16 gene
Gm43767 5 98453747 to 98454127 380 + pseudogene predicted gene 43767
Mir703 5 98475556 to 98475664 108 - miRNA gene microRNA 703
Gm34475 5 98479889 to 98513255 33366 - lncRNA gene predicted gene, 34475
Tssr47448 5 98484045 to 98484048 3 + TSS region transcription start site region 47448
Tssr52009 5 98484237 to 98484268 31 - TSS region transcription start site region 52009
Tssr52010 5 98513191 to 98513233 42 - TSS region transcription start site region 52010
Gm24279 5 98541484 to 98541614 130 + snoRNA gene predicted gene, 24279
Gm11111 5 98552695 to 98553744 1049 + protein coding gene predicted gene 11111
1700010H22Rik 5 98553629 to 98567004 13375 - lincRNA gene RIKEN cDNA 1700010H22 gene
Gm42122 5 98567079 to 98573166 6087 + lncRNA gene predicted gene, 42122
D5Dcr52 5 98597013 to 98597117 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 52
D5Mit399 5 98699870 to 98699992 122 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 399
Gm34563 5 98832753 to 98854507 21754 - lncRNA gene predicted gene, 34563
Cpgi16091 5 98836383 to 98836653 270 CpG island CpG island 16091
Cpgi16092 5 98854387 to 98855697 1310 CpG island CpG island 16092
Tssr47449 5 98854408 to 98854429 21 + TSS region transcription start site region 47449
Bmp3 5 98854415 to 98884053 29638 + protein coding gene bone morphogenetic protein 3
Tssr47450 5 98854434 to 98854466 32 + TSS region transcription start site region 47450
Tssr47451 5 98854473 to 98854487 14 + TSS region transcription start site region 47451
Tssr47452 5 98854553 to 98854562 9 + TSS region transcription start site region 47452
Tssr47453 5 98854781 to 98854809 28 + TSS region transcription start site region 47453
Tssr47454 5 98854831 to 98854842 11 + TSS region transcription start site region 47454
Tssr52011 5 98855088 to 98855092 4 - TSS region transcription start site region 52011
Gm42123 5 98874392 to 98891020 16628 - lncRNA gene predicted gene, 42123
Tssr47455 5 98880001 to 98880006 5 + TSS region transcription start site region 47455
D630004D15Rik 5 98881662 to 98884395 2733 unclassified non-coding RNA gene RIKEN cDNA D630004D15 gene
Prkg2 5 98929773 to 99037351 107578 - protein coding gene protein kinase, cGMP-dependent, type II
Gm10422 5 98930299 to 98931711 1412 unclassified gene predicted gene 10422
Tssr52012 5 98931709 to 98931713 4 - TSS region transcription start site region 52012
Tssr52013 5 98936655 to 98936658 3 - TSS region transcription start site region 52013
Tssr52014 5 98943763 to 98943773 10 - TSS region transcription start site region 52014
Tssr52015 5 98943786 to 98943805 19 - TSS region transcription start site region 52015
Tssr52016 5 98943822 to 98943840 18 - TSS region transcription start site region 52016
Tssr52017 5 98943877 to 98943891 14 - TSS region transcription start site region 52017
Tssr1556 5 98954097 to 98954098 1 - TSS region transcription start site region 1556
Tssr52018 5 98966790 to 98966799 9 - TSS region transcription start site region 52018
Tssr52019 5 99021595 to 99021598 3 - TSS region transcription start site region 52019
Gm3470 5 99021803 to 99022222 419 - pseudogene predicted gene 3470
Tssr52020 5 99022025 to 99022063 38 - TSS region transcription start site region 52020
Cpgi16093 5 99036333 to 99037784 1451 CpG island CpG island 16093
Tssr52021 5 99037148 to 99037206 58 - TSS region transcription start site region 52021
Tssr52022 5 99037342 to 99037353 11 - TSS region transcription start site region 52022
Tssr52023 5 99037369 to 99037384 15 - TSS region transcription start site region 52023
Gm42124 5 99038720 to 99042910 4190 + lncRNA gene predicted gene, 42124
Gm43251 5 99039063 to 99171421 132358 - lincRNA gene predicted gene 43251
Gm19873 5 99106858 to 99109125 2267 - pseudogene predicted gene, 19873
Tssr52024 5 99215395 to 99215421 26 - TSS region transcription start site region 52024
Tssr52025 5 99215642 to 99215662 20 - TSS region transcription start site region 52025
Rasgef1b 5 99217420 to 99252927 35507 - protein coding gene RasGEF domain family, member 1B
Tssr52026 5 99217759 to 99217760 1 - TSS region transcription start site region 52026
Tssr52027 5 99217798 to 99217800 2 - TSS region transcription start site region 52027
Tssr52028 5 99217832 to 99217843 11 - TSS region transcription start site region 52028
Tssr47456 5 99217833 to 99217849 16 + TSS region transcription start site region 47456
Tssr52029 5 99217997 to 99218001 4 - TSS region transcription start site region 52029
Tssr52030 5 99218333 to 99218339 6 - TSS region transcription start site region 52030
Tssr52031 5 99218430 to 99218441 11 - TSS region transcription start site region 52031
Tssr52032 5 99218539 to 99218553 14 - TSS region transcription start site region 52032
Tssr52033 5 99223547 to 99223559 12 - TSS region transcription start site region 52033
Tssr52034 5 99223583 to 99223614 31 - TSS region transcription start site region 52034
Tssr52035 5 99223632 to 99223659 27 - TSS region transcription start site region 52035
Tssr52036 5 99229447 to 99229473 26 - TSS region transcription start site region 52036
Tssr52037 5 99240395 to 99240406 11 - TSS region transcription start site region 52037
Tssr52038 5 99240817 to 99240824 7 - TSS region transcription start site region 52038
Tssr52039 5 99243214 to 99243252 38 - TSS region transcription start site region 52039
Tssr52040 5 99243282 to 99243284 2 - TSS region transcription start site region 52040
Tssr52041 5 99248553 to 99248569 16 - TSS region transcription start site region 52041
Tssr52042 5 99248594 to 99248607 13 - TSS region transcription start site region 52042
Tssr52043 5 99249679 to 99249690 11 - TSS region transcription start site region 52043
Tssr52044 5 99249813 to 99249828 15 - TSS region transcription start site region 52044
Tssr52045 5 99250235 to 99250273 38 - TSS region transcription start site region 52045
Tssr52046 5 99251509 to 99251529 20 - TSS region transcription start site region 52046
Cpgi16094 5 99251599 to 99252107 508 CpG island CpG island 16094
Cpgi16095 5 99252352 to 99253369 1017 CpG island CpG island 16095
Tssr52047 5 99252810 to 99252824 14 - TSS region transcription start site region 52047
Tssr52048 5 99252839 to 99252854 15 - TSS region transcription start site region 52048
Gm35394 5 99274095 to 99279284 5189 + lincRNA gene predicted gene, 35394
Tssr47457 5 99274651 to 99274664 13 + TSS region transcription start site region 47457
Cpgi16096 5 99280000 to 99280335 335 CpG island CpG island 16096
A930011G23Rik 5 99297244 to 99729060 431816 - lncRNA gene RIKEN cDNA A930011G23 gene
D5Mit91 5 99307426 to 99307631 205 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 91
Tssr52049 5 99327093 to 99327113 20 - TSS region transcription start site region 52049
Tssr52050 5 99327187 to 99327234 47 - TSS region transcription start site region 52050
Tssr47458 5 99336728 to 99336741 13 + TSS region transcription start site region 47458
Tssr47459 5 99336743 to 99336754 11 + TSS region transcription start site region 47459
Tssr47460 5 99336760 to 99336768 8 + TSS region transcription start site region 47460
Tssr47461 5 99336776 to 99336784 8 + TSS region transcription start site region 47461
Tssr52051 5 99363465 to 99363470 5 - TSS region transcription start site region 52051
Tssr47462 5 99365544 to 99365558 14 + TSS region transcription start site region 47462
Gm35314 5 99370273 to 99387829 17556 + lncRNA gene predicted gene, 35314
Tssr47463 5 99385613 to 99385616 3 + TSS region transcription start site region 47463
Cpgi16097 5 99416958 to 99417443 485 CpG island CpG island 16097
Gm42125 5 99480347 to 99488136 7789 - lncRNA gene predicted gene, 42125
Gm35253 5 99488246 to 99498914 10668 - lncRNA gene predicted gene, 35253
Tssr47464 5 99508373 to 99508392 19 + TSS region transcription start site region 47464
Gm35172 5 99508389 to 99511037 2648 + lincRNA gene predicted gene, 35172
Gm16227 5 99509944 to 99510682 738 - sense intronic lncRNA gene predicted gene 16227
D5Mit401 5 99514143 to 99514366 223 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 401
Lfibq15 5 100048615 to 99002935 -1045680 QTL liver fibrosis QTL 15
Bbaa3 5 112317856 to 99307426 -13010430 QTL B.burgdorferi-associated arthritis 3