Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:97704184-98827030

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dshv2 5 75154687 to 97871944 22717257 QTL dorsal hippocampal volume 2
l5H1 5 75574987 to 98277030 22702043 heritable phenotypic marker lethal, Chr 5, Harwell 1
Tssr1553 5 97710194 to 97710195 1 + TSS region transcription start site region 1553
Gm34097 5 97822522 to 97846957 24435 - lncRNA gene predicted gene, 34097
Cypr3 5 97871790 to 97871944 154 QTL cytokine production 3
D5Mit20 5 97871790 to 97871944 154 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 20
Antxr2 5 97884688 to 98030962 146274 - protein coding gene anthrax toxin receptor 2
Tssr51981 5 97919878 to 97919883 5 - TSS region transcription start site region 51981
Tssr51982 5 97925674 to 97925683 9 - TSS region transcription start site region 51982
Tssr51983 5 97929814 to 97929833 19 - TSS region transcription start site region 51983
Cpgi16082 5 97935190 to 97935859 669 CpG island CpG island 16082
Gdap7 5 97954051 to 97954531 480 unclassified gene ganglioside-induced differentiation-associated-protein 7
Tssr47432 5 97962007 to 97962012 5 + TSS region transcription start site region 47432
Tssr51984 5 97980678 to 97980694 16 - TSS region transcription start site region 51984
Tssr51985 5 97996037 to 97996054 17 - TSS region transcription start site region 51985
C430019N01Rik 5 97999384 to 98000950 1566 - unclassified gene RIKEN cDNA C430019N01 gene
Gm34226 5 98015842 to 98027462 11620 + lncRNA gene predicted gene, 34226
Tssr51986 5 98016902 to 98016916 14 - TSS region transcription start site region 51986
Tssr51987 5 98018222 to 98018240 18 - TSS region transcription start site region 51987
Cpgi16083 5 98030376 to 98031560 1184 CpG island CpG island 16083
Tssr51988 5 98030570 to 98030616 46 - TSS region transcription start site region 51988
Tssr51989 5 98030617 to 98030627 10 - TSS region transcription start site region 51989
Tssr51990 5 98030630 to 98030647 17 - TSS region transcription start site region 51990
Tssr47433 5 98030695 to 98030724 29 + TSS region transcription start site region 47433
Tssr47434 5 98030725 to 98030736 11 + TSS region transcription start site region 47434
Tssr51991 5 98030727 to 98030765 38 - TSS region transcription start site region 51991
Tssr51992 5 98030797 to 98030820 23 - TSS region transcription start site region 51992
Tssr1554 5 98030952 to 98030962 10 - TSS region transcription start site region 1554
Tssr51993 5 98030970 to 98030992 22 - TSS region transcription start site region 51993
Tssr51994 5 98030994 to 98031038 44 - TSS region transcription start site region 51994
Tssr47435 5 98031095 to 98031110 15 + TSS region transcription start site region 47435
Tssr51995 5 98031137 to 98031254 117 - TSS region transcription start site region 51995
Tssr47436 5 98031264 to 98031289 25 + TSS region transcription start site region 47436
Tssr51996 5 98031297 to 98031316 19 - TSS region transcription start site region 51996
Tssr47437 5 98031299 to 98031310 11 + TSS region transcription start site region 47437
Tssr51997 5 98031335 to 98031347 12 - TSS region transcription start site region 51997
Tssr51998 5 98031375 to 98031388 13 - TSS region transcription start site region 51998
Tssr51999 5 98031410 to 98031421 11 - TSS region transcription start site region 51999
Tssr52000 5 98031431 to 98031449 18 - TSS region transcription start site region 52000
Tssr52001 5 98031451 to 98031463 12 - TSS region transcription start site region 52001
Tssr52002 5 98031471 to 98031487 16 - TSS region transcription start site region 52002
Tssr52003 5 98031513 to 98031523 10 - TSS region transcription start site region 52003
Gm42759 5 98031567 to 98034005 2438 + unclassified gene predicted gene 42759
Tssr47438 5 98033300 to 98033311 11 + TSS region transcription start site region 47438
Tssr52004 5 98035070 to 98035090 20 - TSS region transcription start site region 52004
n-TKctt8 5 98041090 to 98041162 72 - tRNA gene nuclear encoded tRNA lysine 8 (anticodon CTT)
Gm42760 5 98056793 to 98057103 310 + pseudogene predicted gene 42760
Gm8041 5 98075303 to 98075918 615 - pseudogene predicted gene 8041
Gm8044 5 98078679 to 98080052 1373 - pseudogene predicted gene 8044
Gm42121 5 98136522 to 98138996 2474 - lncRNA gene predicted gene, 42121
Gm8048 5 98153181 to 98154176 995 + pseudogene predicted gene 8048
Cpgi16084 5 98167078 to 98167917 839 CpG island CpG island 16084
Prdm8 5 98167203 to 98187454 20251 + protein coding gene PR domain containing 8
Tssr1555 5 98167365 to 98167408 43 + TSS region transcription start site region 1555
Cpgi16085 5 98168611 to 98169067 456 CpG island CpG island 16085
Tssr47439 5 98180866 to 98180881 15 + TSS region transcription start site region 47439
Cpgi16086 5 98181298 to 98181619 321 CpG island CpG island 16086
A730035I17Rik 5 98183118 to 98185024 1906 - antisense lncRNA gene RIKEN cDNA A730035I17 gene
Cpgi16087 5 98184924 to 98186958 2034 CpG island CpG island 16087
Tssr52005 5 98185923 to 98185963 40 - TSS region transcription start site region 52005
Tssr52006 5 98185970 to 98185997 27 - TSS region transcription start site region 52006
Tssr52007 5 98186014 to 98186021 7 - TSS region transcription start site region 52007
Tssr52008 5 98186064 to 98186081 17 - TSS region transcription start site region 52008
Tssr47440 5 98186173 to 98186182 9 + TSS region transcription start site region 47440
Tssr47441 5 98186600 to 98186624 24 + TSS region transcription start site region 47441
Tssr47442 5 98186712 to 98186727 15 + TSS region transcription start site region 47442
Cpgi16088 5 98253708 to 98254938 1230 CpG island CpG island 16088
Tssr47443 5 98254146 to 98254158 12 + TSS region transcription start site region 47443
Tssr47444 5 98254174 to 98254190 16 + TSS region transcription start site region 47444
Fgf5 5 98254184 to 98277030 22846 + protein coding gene fibroblast growth factor 5
Tssr47445 5 98254241 to 98254255 14 + TSS region transcription start site region 47445
Tssr47446 5 98254322 to 98254334 12 + TSS region transcription start site region 47446
Cpgi16089 5 98329159 to 98329734 575 CpG island CpG island 16089
Tssr47447 5 98329298 to 98329350 52 + TSS region transcription start site region 47447
Cfap299 5 98329304 to 98802047 472743 + protein coding gene cilia and flagella associated protein 299
Cpgi16090 5 98330423 to 98330657 234 CpG island CpG island 16090
E030032P16Rik 5 98346394 to 98349324 2930 + unclassified gene RIKEN cDNA E030032P16 gene
Gm43767 5 98453747 to 98454127 380 + pseudogene predicted gene 43767
Mir703 5 98475556 to 98475664 108 - miRNA gene microRNA 703
Gm34475 5 98479889 to 98513255 33366 - lncRNA gene predicted gene, 34475
Tssr47448 5 98484045 to 98484048 3 + TSS region transcription start site region 47448
Tssr52009 5 98484237 to 98484268 31 - TSS region transcription start site region 52009
Tssr52010 5 98513191 to 98513233 42 - TSS region transcription start site region 52010
Gm24279 5 98541484 to 98541614 130 + snoRNA gene predicted gene, 24279
Gm11111 5 98552695 to 98553744 1049 + protein coding gene predicted gene 11111
1700010H22Rik 5 98553629 to 98567004 13375 - lincRNA gene RIKEN cDNA 1700010H22 gene
Gm42122 5 98567079 to 98573166 6087 + lncRNA gene predicted gene, 42122
D5Dcr52 5 98597013 to 98597117 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 52
D5Mit399 5 98699870 to 98699992 122 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 399
Tir10 5 113883925 to 97871790 -16012135 QTL trypanosome infection response 10
Elmaz1 5 116738565 to 97871790 -18866775 QTL elevated maze behavior 1