Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:94367078-97957097

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dshv2 5 75154687 to 97871944 22717257 QTL dorsal hippocampal volume 2
Pwgrq15 5 77027976 to 97510356 20482380 QTL post-weaning growth rate QTL 15
Ogrq2 5 77027976 to 97510356 20482380 QTL overall growth rate QTL 2
AA792892 5 94377340 to 94384334 6994 + protein coding gene expressed sequence AA792892
BC080696 5 94434357 to 94436925 2568 - pseudogene cDNA sequence BC080696
Gm7682 5 94445784 to 94448653 2869 + protein coding gene predicted gene 7682
Gm3139 5 94526284 to 94538367 12083 + protein coding gene predicted gene 3139
Gm42117 5 94586408 to 94607374 20966 + lncRNA gene predicted gene, 42117
Gm3147 5 94612305 to 94616458 4153 - protein coding gene predicted gene 3147
Gm6509 5 94623979 to 94626848 2869 + protein coding gene predicted gene 6509
Gm6205 5 94648416 to 94685374 36958 + protein coding gene predicted gene 6205
Gm42561 5 94733356 to 94736087 2731 + pseudogene predicted gene 42561
Gm7663 5 94769619 to 94772066 2447 - pseudogene predicted gene 7663
Gm46934 5 94778216 to 94780918 2702 + protein coding gene predicted gene, 46934
Gm3183 5 94873783 to 94877205 3422 + protein coding gene predicted gene 3183
Gm42118 5 94925345 to 94946310 20965 + lncRNA gene predicted gene, 42118
Gm3176 5 94951537 to 94954134 2597 - pseudogene predicted gene 3176
Gm7647 5 94963018 to 94965694 2676 + pseudogene predicted gene 7647
Gm6367 5 94988626 to 95026536 37910 + protein coding gene predicted gene 6367
Gm46939 5 95056149 to 95059665 3516 + pseudogene predicted gene, 46939
Gm42661 5 95063576 to 95066307 2731 + pseudogene predicted gene 42661
Gm7939 5 95100024 to 95102282 2258 - pseudogene predicted gene 7939
Gm7942 5 95108456 to 95111158 2702 + protein coding gene predicted gene 7942
Gm16513 5 95182624 to 95195342 12718 + protein coding gene predicted gene, Gm16513
Gm10424 5 95268729 to 95272884 4155 - protein coding gene predicted gene 10424
Gm6468 5 95280462 to 95283192 2730 + pseudogene predicted gene 6468
Gm3259 5 95305923 to 95343575 37652 + protein coding gene predicted gene 3259
Gm32072 5 95381054 to 95383784 2730 + pseudogene predicted gene, 32072
Gm7961 5 95417110 to 95419751 2641 - pseudogene predicted gene 7961
Gm46935 5 95425935 to 95428637 2702 + protein coding gene predicted gene, 46935
Gm42662 5 95425935 to 95428628 2693 - pseudogene predicted gene 42662
D5Ertd577e 5 95456806 to 95485587 28781 + protein coding gene DNA segment, Chr 5, ERATO Doi 577, expressed
Gm3286 5 95510742 to 95522402 11660 + protein coding gene predicted gene 3286
Gm7971 5 95590835 to 95595018 4183 - protein coding gene predicted gene 7971
Gm6348 5 95602578 to 95605308 2730 + pseudogene predicted gene 6348
Gm3302 5 95662305 to 95664998 2693 + pseudogene predicted gene 3302
Gm7978 5 95732092 to 95736173 4081 - protein coding gene predicted gene 7978
Gm7982 5 95742014 to 95746617 4603 + protein coding gene predicted gene 7982
E330014E10Rik 5 95775870 to 95804230 28360 + protein coding gene RIKEN cDNA E330014E10 gene
Gm42714 5 95834961 to 95837450 2489 - pseudogene predicted gene 42714
Gm5559 5 95861714 to 95862715 1001 + pseudogene predicted gene 5559
Gm25937 5 95867334 to 95867440 106 + snRNA gene predicted gene, 25937
D5Mit423 5 95943626 to 95943749 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 423
Tssr47388 5 95956916 to 95956933 17 + TSS region transcription start site region 47388
Cxcl13 5 95956951 to 95961068 4117 + protein coding gene chemokine (C-X-C motif) ligand 13
Tssr47389 5 95958716 to 95958738 22 + TSS region transcription start site region 47389
Tssr47390 5 95960309 to 95960314 5 + TSS region transcription start site region 47390
Tssr47391 5 95973920 to 95973924 4 + TSS region transcription start site region 47391
Gm7993 5 95974240 to 95975623 1383 + pseudogene predicted gene 7993
D5Mit313 5 96035624 to 96035733 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 313
Cnot6l 5 96070333 to 96164171 93838 - protein coding gene CCR4-NOT transcription complex, subunit 6-like
Tssr51946 5 96077145 to 96077161 16 - TSS region transcription start site region 51946
Tssr51947 5 96092514 to 96092518 4 - TSS region transcription start site region 51947
Tssr51948 5 96093089 to 96093093 4 - TSS region transcription start site region 51948
Tssr51949 5 96093351 to 96093355 4 - TSS region transcription start site region 51949
Tssr51950 5 96115602 to 96115613 11 - TSS region transcription start site region 51950
Tssr51951 5 96131215 to 96131238 23 - TSS region transcription start site region 51951
Cpgi16073 5 96160669 to 96162960 2291 CpG island CpG island 16073
Tssr47392 5 96160757 to 96160765 8 + TSS region transcription start site region 47392
Tssr51952 5 96161748 to 96161774 26 - TSS region transcription start site region 51952
Tssr51953 5 96162078 to 96162097 19 - TSS region transcription start site region 51953
Tssr1549 5 96162170 to 96162216 46 - TSS region transcription start site region 1549
Tssr51954 5 96162457 to 96162471 14 - TSS region transcription start site region 51954
Tssr51955 5 96162482 to 96162576 94 - TSS region transcription start site region 51955
Tssr51956 5 96162584 to 96162595 11 - TSS region transcription start site region 51956
Tssr51957 5 96162615 to 96162622 7 - TSS region transcription start site region 51957
Tssr51958 5 96163008 to 96163019 11 - TSS region transcription start site region 51958
Tssr47393 5 96163215 to 96163222 7 + TSS region transcription start site region 47393
Tssr51959 5 96163576 to 96163579 3 - TSS region transcription start site region 51959
Tssr51960 5 96164119 to 96164142 23 - TSS region transcription start site region 51960
Tssr51961 5 96164147 to 96164201 54 - TSS region transcription start site region 51961
Tssr47394 5 96173881 to 96173912 31 + TSS region transcription start site region 47394
Gm2840 5 96173940 to 96174350 410 + pseudogene predicted gene 2840
Tssr47395 5 96209463 to 96209488 25 + TSS region transcription start site region 47395
Mrpl1 5 96209498 to 96266727 57229 + protein coding gene mitochondrial ribosomal protein L1
Tssr47396 5 96209744 to 96209763 19 + TSS region transcription start site region 47396
Cpgi16074 5 96209963 to 96210411 448 CpG island CpG island 16074
Tssr51962 5 96210005 to 96210026 21 - TSS region transcription start site region 51962
Tssr47397 5 96210128 to 96210161 33 + TSS region transcription start site region 47397
Cpgi16075 5 96331086 to 96331474 388 CpG island CpG island 16075
Cpgi16076 5 96373534 to 96375074 1540 CpG island CpG island 16076
Fras1 5 96373955 to 96784728 410773 + protein coding gene Fraser extracellular matrix complex subunit 1
Tssr47398 5 96374146 to 96374165 19 + TSS region transcription start site region 47398
Tssr47399 5 96374167 to 96374213 46 + TSS region transcription start site region 47399
Tssr47400 5 96374425 to 96374448 23 + TSS region transcription start site region 47400
Tssr47401 5 96374520 to 96374531 11 + TSS region transcription start site region 47401
Bglu13 5 96391781 to 96391927 146 QTL blood glucose level 13
D5Mit312 5 96391781 to 96391927 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 312
Tssr47402 5 96406932 to 96406944 12 + TSS region transcription start site region 47402
Gm33050 5 96456389 to 96457743 1354 - antisense lncRNA gene predicted gene, 33050
Gm42605 5 96485766 to 96486150 384 + unclassified gene predicted gene 42605
Tssr1550 5 96573796 to 96573807 11 + TSS region transcription start site region 1550
Tssr47403 5 96657124 to 96657126 2 + TSS region transcription start site region 47403
Gm32995 5 96729060 to 96733882 4822 - lncRNA gene predicted gene, 32995
Gm42604 5 96735547 to 96739364 3817 - antisense lncRNA gene predicted gene 42604
Tssr51963 5 96739212 to 96739222 10 - TSS region transcription start site region 51963
Tssr51964 5 96739664 to 96739686 22 - TSS region transcription start site region 51964
Tssr1551 5 96747693 to 96747698 5 + TSS region transcription start site region 1551
Tssr47404 5 96793352 to 96793380 28 + TSS region transcription start site region 47404
Cpgi16077 5 96793358 to 96793691 333 CpG island CpG island 16077
Anxa3 5 96793385 to 96845968 52583 + protein coding gene annexin A3
Tssr47405 5 96793387 to 96793404 17 + TSS region transcription start site region 47405
Tssr47406 5 96793413 to 96793424 11 + TSS region transcription start site region 47406
Tssr47407 5 96793426 to 96793431 5 + TSS region transcription start site region 47407
Tssr47408 5 96793453 to 96793528 75 + TSS region transcription start site region 47408
Tssr47409 5 96796082 to 96796093 11 + TSS region transcription start site region 47409
Gm42603 5 96798207 to 96800352 2145 + unclassified gene predicted gene 42603
Tssr47410 5 96799792 to 96799809 17 + TSS region transcription start site region 47410
Tssr47411 5 96824902 to 96824916 14 + TSS region transcription start site region 47411
Tssr47412 5 96827577 to 96827583 6 + TSS region transcription start site region 47412
Tssr47413 5 96831474 to 96831489 15 + TSS region transcription start site region 47413
Tssr47414 5 96837477 to 96837526 49 + TSS region transcription start site region 47414
Tssr47415 5 96841995 to 96842026 31 + TSS region transcription start site region 47415
Tssr47416 5 96849498 to 96849510 12 + TSS region transcription start site region 47416
1700016F12Rik 5 96849505 to 96852938 3433 + lincRNA gene RIKEN cDNA 1700016F12 gene
Gm33100 5 96879310 to 96891170 11860 + lncRNA gene predicted gene, 33100
Gm42601 5 96879342 to 96891172 11830 + lincRNA gene predicted gene 42601
Gm42602 5 96879518 to 96882741 3223 + unclassified gene predicted gene 42602
Gm24623 5 96907632 to 96907825 193 + snRNA gene predicted gene, 24623
Gm33370 5 96910341 to 96922175 11834 - lincRNA gene predicted gene, 33370
Tssr47417 5 96911737 to 96911792 55 + TSS region transcription start site region 47417
Gm43147 5 96912700 to 96913241 541 - unclassified gene predicted gene 43147
D5Mit310 5 96913474 to 96913572 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 310
D5Mit310.1 5 96913555 to 96913707 152 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 310.1
Tssr47418 5 96917996 to 96918014 18 + TSS region transcription start site region 47418
Tssr47419 5 96918355 to 96918360 5 + TSS region transcription start site region 47419
Tssr51965 5 96921152 to 96921160 8 - TSS region transcription start site region 51965
Tssr51966 5 96921162 to 96921178 16 - TSS region transcription start site region 51966
Tssr51967 5 96921182 to 96921198 16 - TSS region transcription start site region 51967
Tssr51968 5 96921225 to 96921238 13 - TSS region transcription start site region 51968
Gm8013 5 96921272 to 96934867 13595 + lincRNA gene predicted gene 8013
Tssr51969 5 96922141 to 96922156 15 - TSS region transcription start site region 51969
Tssr51970 5 96922176 to 96922188 12 - TSS region transcription start site region 51970
Gm46916 5 96936612 to 96942090 5478 - lncRNA gene predicted gene, 46916
Gm43148 5 96936813 to 96937332 519 + unclassified gene predicted gene 43148
Gm43144 5 96940297 to 96940781 484 + unclassified gene predicted gene 43144
Tssr47420 5 96963165 to 96963192 27 + TSS region transcription start site region 47420
Tssr47421 5 96968821 to 96968837 16 + TSS region transcription start site region 47421
Tssr47422 5 96996020 to 96996033 13 + TSS region transcription start site region 47422
Gm9484 5 96996206 to 96997364 1158 - lincRNA gene predicted gene 9484
Cpgi16078 5 96996771 to 96998472 1701 CpG island CpG island 16078
Tssr1552 5 96997438 to 96997485 47 + TSS region transcription start site region 1552
Tssr47423 5 96997676 to 96997766 90 + TSS region transcription start site region 47423
Bmp2k 5 96997689 to 97091048 93359 + protein coding gene BMP2 inducible kinase
Tssr47424 5 97006513 to 97006522 9 + TSS region transcription start site region 47424
Gm43145 5 97046181 to 97046808 627 + unclassified gene predicted gene 43145
Tssr47425 5 97048798 to 97048806 8 + TSS region transcription start site region 47425
Tssr47426 5 97048876 to 97048888 12 + TSS region transcription start site region 47426
Paqr3 5 97082329 to 97111596 29267 - protein coding gene progestin and adipoQ receptor family member III
Cpgi16079 5 97087131 to 97087822 691 CpG island CpG island 16079
Tssr47427 5 97090822 to 97090847 25 + TSS region transcription start site region 47427
Tssr47428 5 97091249 to 97091253 4 + TSS region transcription start site region 47428
Tssr51971 5 97094111 to 97094113 2 - TSS region transcription start site region 51971
Tssr51972 5 97095806 to 97095822 16 - TSS region transcription start site region 51972
Cpgi16080 5 97111147 to 97111909 762 CpG island CpG island 16080
Tssr51973 5 97111545 to 97111554 9 - TSS region transcription start site region 51973
Tssr51974 5 97111565 to 97111586 21 - TSS region transcription start site region 51974
Tssr51975 5 97111589 to 97111632 43 - TSS region transcription start site region 51975
Gm33609 5 97143026 to 97149848 6822 + lincRNA gene predicted gene, 33609
Tssr47429 5 97195572 to 97195598 26 + TSS region transcription start site region 47429
Gm2861 5 97195586 to 97207964 12378 + lincRNA gene predicted gene 2861
Gm33911 5 97208433 to 97223767 15334 - lncRNA gene predicted gene, 33911
Tssr47430 5 97264744 to 97264750 6 + TSS region transcription start site region 47430
Gm5560 5 97264828 to 97265719 891 + pseudogene predicted pseudogene 5560
Gm33969 5 97325904 to 97348439 22535 + lincRNA gene predicted gene, 33969
Naa11 5 97382209 to 97392330 10121 - protein coding gene N(alpha)-acetyltransferase 11, NatA catalytic subunit
Cpgi16081 5 97391864 to 97392471 607 CpG island CpG island 16081
Tssr51976 5 97392314 to 97392328 14 - TSS region transcription start site region 51976
Tssr51977 5 97392332 to 97392352 20 - TSS region transcription start site region 51977
Tssr51978 5 97392355 to 97392365 10 - TSS region transcription start site region 51978
Tssr51979 5 97392371 to 97392385 14 - TSS region transcription start site region 51979
4930467D21Rik 5 97392417 to 97588126 195709 + lincRNA gene RIKEN cDNA 4930467D21 gene
Gk2 5 97455161 to 97457008 1847 - protein coding gene glycerol kinase 2
Tssr51980 5 97456971 to 97457007 36 - TSS region transcription start site region 51980
D5Ertd215e 5 97552781 to 97553006 225 DNA segment DNA segment, Chr 5, ERATO Doi 215, expressed
Gm34029 5 97636541 to 97643165 6624 + lncRNA gene predicted gene, 34029
Tssr47431 5 97700798 to 97700815 17 + TSS region transcription start site region 47431
Mono1 5 97701400 to 97701400 0 QTL monocyte differential 1
Tssr1553 5 97710194 to 97710195 1 + TSS region transcription start site region 1553
Gm34097 5 97822522 to 97846957 24435 - lncRNA gene predicted gene, 34097
Cypr3 5 97871790 to 97871944 154 QTL cytokine production 3
D5Mit20 5 97871790 to 97871944 154 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 20
Antxr2 5 97884688 to 98030962 146274 - protein coding gene anthrax toxin receptor 2
Tssr51981 5 97919878 to 97919883 5 - TSS region transcription start site region 51981
Tssr51982 5 97925674 to 97925683 9 - TSS region transcription start site region 51982
Tssr51983 5 97929814 to 97929833 19 - TSS region transcription start site region 51983
Cpgi16082 5 97935190 to 97935859 669 CpG island CpG island 16082
Gdap7 5 97954051 to 97954531 480 unclassified gene ganglioside-induced differentiation-associated-protein 7
Tir10 5 113883925 to 97871790 -16012135 QTL trypanosome infection response 10
Elmaz1 5 116738565 to 97871790 -18866775 QTL elevated maze behavior 1