Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:93175185-94131463

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sept11 5 93093437 to 93176447 83010 + protein coding gene septin 11
Tssr47376 5 93175352 to 93175355 3 + TSS region transcription start site region 47376
Gm43682 5 93176970 to 93179059 2089 + unclassified gene predicted gene 43682
Ccni 5 93181933 to 93206495 24562 - protein coding gene cyclin I
Gm43681 5 93183856 to 93185758 1902 - unclassified gene predicted gene 43681
Tssr51937 5 93190277 to 93190285 8 - TSS region transcription start site region 51937
Tssr51938 5 93192942 to 93192946 4 - TSS region transcription start site region 51938
Gm2986 5 93195798 to 93196179 381 + pseudogene predicted gene 2986
Tssr51939 5 93205364 to 93205376 12 - TSS region transcription start site region 51939
Tssr47377 5 93205470 to 93205483 13 + TSS region transcription start site region 47377
Cpgi16071 5 93205478 to 93207025 1547 CpG island CpG island 16071
Tssr47378 5 93205644 to 93205679 35 + TSS region transcription start site region 47378
Tssr51940 5 93205714 to 93205718 4 - TSS region transcription start site region 51940
Tssr47379 5 93206003 to 93206020 17 + TSS region transcription start site region 47379
Tssr47380 5 93206046 to 93206052 6 + TSS region transcription start site region 47380
Tssr51941 5 93206442 to 93206470 28 - TSS region transcription start site region 51941
Tssr51942 5 93206489 to 93206498 9 - TSS region transcription start site region 51942
2010109A12Rik 5 93206518 to 93213474 6956 + protein coding gene RIKEN cDNA 2010109A12 gene
D5Dcr72 5 93210039 to 93210134 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 72
Gm42116 5 93221647 to 93255191 33544 + lncRNA gene predicted gene, 42116
Cpgi16072 5 93266880 to 93268616 1736 CpG island CpG island 16072
Tssr47381 5 93267547 to 93267556 9 + TSS region transcription start site region 47381
Tssr47382 5 93267562 to 93267605 43 + TSS region transcription start site region 47382
Ccng2 5 93267573 to 93276231 8658 + protein coding gene cyclin G2
Tssr47383 5 93268247 to 93268289 42 + TSS region transcription start site region 47383
Tssr47384 5 93268502 to 93268522 20 + TSS region transcription start site region 47384
Tssr47385 5 93268532 to 93268578 46 + TSS region transcription start site region 47385
Tssr47386 5 93270502 to 93270506 4 + TSS region transcription start site region 47386
Tssr47387 5 93270861 to 93270902 41 + TSS region transcription start site region 47387
Thyls2 5 93297205 to 93297366 161 QTL thymic lymphoma susceptibility 2
Dbsty2 5 93297205 to 93297366 161 QTL diabesity 2
Ahl16 5 93297205 to 93297366 161 QTL age related hearing loss, early onset 16
Cocrb6 5 93297205 to 93297366 161 QTL cocaine related behavior 6
D5Mit7 5 93297205 to 93297366 161 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 7
D5Mit18 5 93297209 to 93297446 237 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 18
Tssr51943 5 93306426 to 93306432 6 - TSS region transcription start site region 51943
Tssr51944 5 93306438 to 93306447 9 - TSS region transcription start site region 51944
Tssr51945 5 93306450 to 93306458 8 - TSS region transcription start site region 51945
Kat2b-ps 5 93390602 to 93393091 2489 - pseudogene K(lysine) acetyltransferase 2B, pseudogene
Gm18118 5 93410762 to 93411860 1098 + pseudogene predicted gene, 18118
Gm43224 5 93421672 to 93423396 1724 + pseudogene predicted gene 43224
Gm16427 5 93482115 to 93536331 54216 - protein coding gene predicted gene 16427
C87414 5 93635185 to 93671463 36278 - protein coding gene expressed sequence C87414
Gm43225 5 93694994 to 93697721 2727 - pseudogene predicted gene 43225
Gm43226 5 93706474 to 93706732 258 + pseudogene predicted gene 43226
Gm7919 5 93738096 to 93740783 2687 + pseudogene predicted gene 7919
Gm43227 5 93770300 to 93771800 1500 + pseudogene predicted gene 43227
Gm7792 5 93843776 to 93856107 12331 + protein coding gene predicted gene 7792
Gm16429 5 93925013 to 93929195 4182 - protein coding gene predicted gene 16429
Gm6346 5 93936755 to 93939485 2730 + pseudogene predicted gene 6346
Gm3089 5 93996481 to 93999174 2693 + pseudogene predicted gene 3089
BC061212 5 94066454 to 94070545 4091 - protein coding gene cDNA sequence BC061212
Gm6351 5 94076385 to 94080997 4612 + protein coding gene predicted gene 6351