Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:92847161-93077173

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shroom3 5 92683435 to 92965318 281883 + protein coding gene shroom family member 3
Tssr47331 5 92856431 to 92856443 12 + TSS region transcription start site region 47331
Tssr47332 5 92856454 to 92856465 11 + TSS region transcription start site region 47332
Tssr47333 5 92856471 to 92856511 40 + TSS region transcription start site region 47333
Tssr47334 5 92859443 to 92859472 29 + TSS region transcription start site region 47334
Tssr47335 5 92876363 to 92876368 5 + TSS region transcription start site region 47335
Tssr47336 5 92877687 to 92877691 4 + TSS region transcription start site region 47336
Cpgi16066 5 92897510 to 92898732 1222 CpG island CpG island 16066
Tssr47337 5 92897782 to 92897793 11 + TSS region transcription start site region 47337
Tssr47338 5 92897956 to 92897974 18 + TSS region transcription start site region 47338
Tssr47339 5 92897981 to 92898052 71 + TSS region transcription start site region 47339
Tssr47340 5 92898053 to 92898075 22 + TSS region transcription start site region 47340
Tssr47341 5 92898141 to 92898166 25 + TSS region transcription start site region 47341
Gm42115 5 92899559 to 92902303 2744 - lncRNA gene predicted gene, 42115
Tssr47342 5 92919622 to 92919666 44 + TSS region transcription start site region 47342
Tssr47343 5 92925400 to 92925448 48 + TSS region transcription start site region 47343
Tssr47344 5 92933317 to 92933337 20 + TSS region transcription start site region 47344
Tssr47345 5 92939920 to 92939931 11 + TSS region transcription start site region 47345
Tssr47346 5 92940529 to 92940554 25 + TSS region transcription start site region 47346
Cpgi16067 5 92941479 to 92943203 1724 CpG island CpG island 16067
Tssr47347 5 92955054 to 92955058 4 + TSS region transcription start site region 47347
Tssr47348 5 92962068 to 92962093 25 + TSS region transcription start site region 47348
Tssr47349 5 92962161 to 92962173 12 + TSS region transcription start site region 47349
Tssr51931 5 92964770 to 92964787 17 - TSS region transcription start site region 51931
Cpgi16068 5 92964839 to 92964990 151 CpG island CpG island 16068
Gm36764 5 92988632 to 93009072 20440 - lncRNA gene predicted gene, 36764
Tssr47350 5 93003795 to 93003810 15 + TSS region transcription start site region 47350
Gm6450 5 93003831 to 93004404 573 + pseudogene predicted gene 6450
Gm25521 5 93013032 to 93013139 107 - snRNA gene predicted gene, 25521
Sowahb 5 93041123 to 93045022 3899 - protein coding gene sosondowah ankyrin repeat domain family member B
Skmw13 5 93042404 to 93042620 216 QTL skeletal muscle weight 13
D5Mit19 5 93042404 to 93042620 216 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 19
Cpgi16069 5 93043763 to 93045536 1773 CpG island CpG island 16069
9330159N05Rik 5 93044719 to 93048429 3710 protein coding gene RIKEN cDNA 9330159N05 gene
Tssr51932 5 93045026 to 93045064 38 - TSS region transcription start site region 51932
Gm22915 5 93073861 to 93073996 135 + snoRNA gene predicted gene, 22915