Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:92697404-93387620

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shroom3 5 92683435 to 92965318 281883 + protein coding gene shroom family member 3
Gm20500 5 92736205 to 92737442 1237 + sense intronic lncRNA gene predicted gene 20500
D5Mit86.1 5 92737335 to 92737447 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 86.1
D5Mit86 5 92737416 to 92737565 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 86
Mir1961 5 92788451 to 92788562 111 - miRNA gene microRNA 1961
4932430I15Rik 5 92804220 to 92809488 5268 - lincRNA gene RIKEN cDNA 4932430I15 gene
Cpgi16065 5 92809027 to 92809491 464 CpG island CpG island 16065
Tssr47326 5 92809332 to 92809371 39 + TSS region transcription start site region 47326
Tssr47327 5 92809372 to 92809436 64 + TSS region transcription start site region 47327
Tssr1548 5 92817827 to 92817832 5 + TSS region transcription start site region 1548
Tssr47328 5 92825811 to 92825851 40 + TSS region transcription start site region 47328
Tssr47329 5 92825901 to 92825925 24 + TSS region transcription start site region 47329
Tssr47330 5 92843671 to 92843675 4 + TSS region transcription start site region 47330
Tssr47331 5 92856431 to 92856443 12 + TSS region transcription start site region 47331
Tssr47332 5 92856454 to 92856465 11 + TSS region transcription start site region 47332
Tssr47333 5 92856471 to 92856511 40 + TSS region transcription start site region 47333
Tssr47334 5 92859443 to 92859472 29 + TSS region transcription start site region 47334
Tssr47335 5 92876363 to 92876368 5 + TSS region transcription start site region 47335
Tssr47336 5 92877687 to 92877691 4 + TSS region transcription start site region 47336
Cpgi16066 5 92897510 to 92898732 1222 CpG island CpG island 16066
Tssr47337 5 92897782 to 92897793 11 + TSS region transcription start site region 47337
Tssr47338 5 92897956 to 92897974 18 + TSS region transcription start site region 47338
Tssr47339 5 92897981 to 92898052 71 + TSS region transcription start site region 47339
Tssr47340 5 92898053 to 92898075 22 + TSS region transcription start site region 47340
Tssr47341 5 92898141 to 92898166 25 + TSS region transcription start site region 47341
Gm42115 5 92899559 to 92902303 2744 - lncRNA gene predicted gene, 42115
Tssr47342 5 92919622 to 92919666 44 + TSS region transcription start site region 47342
Tssr47343 5 92925400 to 92925448 48 + TSS region transcription start site region 47343
Tssr47344 5 92933317 to 92933337 20 + TSS region transcription start site region 47344
Tssr47345 5 92939920 to 92939931 11 + TSS region transcription start site region 47345
Tssr47346 5 92940529 to 92940554 25 + TSS region transcription start site region 47346
Cpgi16067 5 92941479 to 92943203 1724 CpG island CpG island 16067
Tssr47347 5 92955054 to 92955058 4 + TSS region transcription start site region 47347
Tssr47348 5 92962068 to 92962093 25 + TSS region transcription start site region 47348
Tssr47349 5 92962161 to 92962173 12 + TSS region transcription start site region 47349
Tssr51931 5 92964770 to 92964787 17 - TSS region transcription start site region 51931
Cpgi16068 5 92964839 to 92964990 151 CpG island CpG island 16068
Gm36764 5 92988632 to 93009072 20440 - lncRNA gene predicted gene, 36764
Tssr47350 5 93003795 to 93003810 15 + TSS region transcription start site region 47350
Gm6450 5 93003831 to 93004404 573 + pseudogene predicted gene 6450
Gm25521 5 93013032 to 93013139 107 - snRNA gene predicted gene, 25521
Sowahb 5 93041123 to 93045022 3899 - protein coding gene sosondowah ankyrin repeat domain family member B
D5Mit19 5 93042404 to 93042620 216 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 19
Skmw13 5 93042404 to 93042620 216 QTL skeletal muscle weight 13
Cpgi16069 5 93043763 to 93045536 1773 CpG island CpG island 16069
9330159N05Rik 5 93044719 to 93048429 3710 protein coding gene RIKEN cDNA 9330159N05 gene
Tssr51932 5 93045026 to 93045064 38 - TSS region transcription start site region 51932
Gm22915 5 93073861 to 93073996 135 + snoRNA gene predicted gene, 22915
Gm43172 5 93090994 to 93093130 2136 + unclassified gene predicted gene 43172
Cpgi16070 5 93092214 to 93094544 2330 CpG island CpG island 16070
Gm43173 5 93092759 to 93093351 592 - unclassified gene predicted gene 43173
Tssr51933 5 93093119 to 93093137 18 - TSS region transcription start site region 51933
Tssr47351 5 93093428 to 93093444 16 + TSS region transcription start site region 47351
Sept11 5 93093437 to 93176447 83010 + protein coding gene septin 11
Tssr47352 5 93093473 to 93093483 10 + TSS region transcription start site region 47352
Tssr47353 5 93093498 to 93093549 51 + TSS region transcription start site region 47353
Tssr47354 5 93104822 to 93104846 24 + TSS region transcription start site region 47354
Tssr47355 5 93105986 to 93105989 3 + TSS region transcription start site region 47355
Tssr47356 5 93120187 to 93120190 3 + TSS region transcription start site region 47356
D5Mit205 5 93132927 to 93133058 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 205
Chlq14 5 93132927 to 93133058 131 QTL circulating hormone level QTL 14
Hdlq2 5 93132927 to 93133058 131 QTL HDL QTL 2
Cdcs10 5 93132927 to 93133058 131 QTL cytokine deficiency colitis susceptibility 10
Tssr47357 5 93133550 to 93133570 20 + TSS region transcription start site region 47357
Tssr47358 5 93133593 to 93133608 15 + TSS region transcription start site region 47358
Tssr51934 5 93136971 to 93136985 14 - TSS region transcription start site region 51934
Tssr47359 5 93150134 to 93150145 11 + TSS region transcription start site region 47359
Tssr51935 5 93150709 to 93150723 14 - TSS region transcription start site region 51935
Tssr47360 5 93154966 to 93155017 51 + TSS region transcription start site region 47360
D5Dcr71 5 93157851 to 93157946 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 71
Tssr47361 5 93159839 to 93159851 12 + TSS region transcription start site region 47361
Tssr47362 5 93160031 to 93160036 5 + TSS region transcription start site region 47362
Tssr47363 5 93161184 to 93161220 36 + TSS region transcription start site region 47363
Tssr51936 5 93165339 to 93165381 42 - TSS region transcription start site region 51936
Tssr47364 5 93167610 to 93167623 13 + TSS region transcription start site region 47364
Tssr47365 5 93169950 to 93169966 16 + TSS region transcription start site region 47365
Tssr47366 5 93171366 to 93171386 20 + TSS region transcription start site region 47366
Tssr47367 5 93172472 to 93172484 12 + TSS region transcription start site region 47367
Tssr47368 5 93172764 to 93172778 14 + TSS region transcription start site region 47368
Tssr47369 5 93172792 to 93172815 23 + TSS region transcription start site region 47369
Tssr47370 5 93172935 to 93172950 15 + TSS region transcription start site region 47370
Tssr47371 5 93172994 to 93173019 25 + TSS region transcription start site region 47371
Tssr47372 5 93173027 to 93173047 20 + TSS region transcription start site region 47372
Tssr47373 5 93173062 to 93173104 42 + TSS region transcription start site region 47373
Tssr47374 5 93173584 to 93173633 49 + TSS region transcription start site region 47374
Tssr47375 5 93173677 to 93173681 4 + TSS region transcription start site region 47375
Tssr47376 5 93175352 to 93175355 3 + TSS region transcription start site region 47376
Gm43682 5 93176970 to 93179059 2089 + unclassified gene predicted gene 43682
Ccni 5 93181933 to 93206495 24562 - protein coding gene cyclin I
Gm43681 5 93183856 to 93185758 1902 - unclassified gene predicted gene 43681
Tssr51937 5 93190277 to 93190285 8 - TSS region transcription start site region 51937
Tssr51938 5 93192942 to 93192946 4 - TSS region transcription start site region 51938
Gm2986 5 93195798 to 93196179 381 + pseudogene predicted gene 2986
Tssr51939 5 93205364 to 93205376 12 - TSS region transcription start site region 51939
Tssr47377 5 93205470 to 93205483 13 + TSS region transcription start site region 47377
Cpgi16071 5 93205478 to 93207025 1547 CpG island CpG island 16071
Tssr47378 5 93205644 to 93205679 35 + TSS region transcription start site region 47378
Tssr51940 5 93205714 to 93205718 4 - TSS region transcription start site region 51940
Tssr47379 5 93206003 to 93206020 17 + TSS region transcription start site region 47379
Tssr47380 5 93206046 to 93206052 6 + TSS region transcription start site region 47380
Tssr51941 5 93206442 to 93206470 28 - TSS region transcription start site region 51941
Tssr51942 5 93206489 to 93206498 9 - TSS region transcription start site region 51942
2010109A12Rik 5 93206518 to 93213474 6956 + protein coding gene RIKEN cDNA 2010109A12 gene
D5Dcr72 5 93210039 to 93210134 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 72
Gm42116 5 93221647 to 93255191 33544 + lncRNA gene predicted gene, 42116
Cpgi16072 5 93266880 to 93268616 1736 CpG island CpG island 16072
Tssr47381 5 93267547 to 93267556 9 + TSS region transcription start site region 47381
Tssr47382 5 93267562 to 93267605 43 + TSS region transcription start site region 47382
Ccng2 5 93267573 to 93276231 8658 + protein coding gene cyclin G2
Tssr47383 5 93268247 to 93268289 42 + TSS region transcription start site region 47383
Tssr47384 5 93268502 to 93268522 20 + TSS region transcription start site region 47384
Tssr47385 5 93268532 to 93268578 46 + TSS region transcription start site region 47385
Tssr47386 5 93270502 to 93270506 4 + TSS region transcription start site region 47386
Tssr47387 5 93270861 to 93270902 41 + TSS region transcription start site region 47387
Thyls2 5 93297205 to 93297366 161 QTL thymic lymphoma susceptibility 2
D5Mit7 5 93297205 to 93297366 161 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 7
Cocrb6 5 93297205 to 93297366 161 QTL cocaine related behavior 6
Ahl16 5 93297205 to 93297366 161 QTL age related hearing loss, early onset 16
Dbsty2 5 93297205 to 93297366 161 QTL diabesity 2
D5Mit18 5 93297209 to 93297446 237 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 18
Tssr51943 5 93306426 to 93306432 6 - TSS region transcription start site region 51943
Tssr51944 5 93306438 to 93306447 9 - TSS region transcription start site region 51944
Tssr51945 5 93306450 to 93306458 8 - TSS region transcription start site region 51945