Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:92498435-93150318

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scarb2 5 92441311 to 92505657 64346 - protein coding gene scavenger receptor class B, member 2
Tssr51920 5 92500522 to 92500525 3 - TSS region transcription start site region 51920
Tssr51921 5 92501791 to 92501796 5 - TSS region transcription start site region 51921
Cpgi16061 5 92504824 to 92506023 1199 CpG island CpG island 16061
Tssr47315 5 92505030 to 92505039 9 + TSS region transcription start site region 47315
Tssr51922 5 92505473 to 92505489 16 - TSS region transcription start site region 51922
Tssr51923 5 92505501 to 92505516 15 - TSS region transcription start site region 51923
Tssr51924 5 92505518 to 92505666 148 - TSS region transcription start site region 51924
Tssr47316 5 92532919 to 92532921 2 + TSS region transcription start site region 47316
Tssr47317 5 92555035 to 92555070 35 + TSS region transcription start site region 47317
Fam47e 5 92555069 to 92591279 36210 + protein coding gene family with sequence similarity 47, member E
Tssr47318 5 92571523 to 92571543 20 + TSS region transcription start site region 47318
Tssr47319 5 92571544 to 92571563 19 + TSS region transcription start site region 47319
Cpgi16062 5 92602720 to 92603590 870 CpG island CpG island 16062
Tssr47320 5 92603039 to 92603050 11 + TSS region transcription start site region 47320
Stbd1 5 92603051 to 92606579 3528 + protein coding gene starch binding domain 1
Tssr47321 5 92603076 to 92603109 33 + TSS region transcription start site region 47321
Ccdc158 5 92608237 to 92675281 67044 - protein coding gene coiled-coil domain containing 158
Cpgi16063 5 92674934 to 92675640 706 CpG island CpG island 16063
Tssr51925 5 92675139 to 92675145 6 - TSS region transcription start site region 51925
Tssr51926 5 92675215 to 92675218 3 - TSS region transcription start site region 51926
Tssr51927 5 92675233 to 92675249 16 - TSS region transcription start site region 51927
Tssr51928 5 92675253 to 92675287 34 - TSS region transcription start site region 51928
Tssr51929 5 92675429 to 92675446 17 - TSS region transcription start site region 51929
Tssr51930 5 92675834 to 92675882 48 - TSS region transcription start site region 51930
Cpgi16064 5 92682780 to 92683751 971 CpG island CpG island 16064
Tssr47322 5 92682782 to 92682805 23 + TSS region transcription start site region 47322
Tssr47323 5 92683310 to 92683335 25 + TSS region transcription start site region 47323
Shroom3 5 92683435 to 92965318 281883 + protein coding gene shroom family member 3
Tssr47324 5 92683626 to 92683648 22 + TSS region transcription start site region 47324
Tssr47325 5 92684837 to 92684841 4 + TSS region transcription start site region 47325
Gm20500 5 92736205 to 92737442 1237 + sense intronic lncRNA gene predicted gene 20500
D5Mit86.1 5 92737335 to 92737447 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 86.1
D5Mit86 5 92737416 to 92737565 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 86
Mir1961 5 92788451 to 92788562 111 - miRNA gene microRNA 1961
4932430I15Rik 5 92804220 to 92809488 5268 - lincRNA gene RIKEN cDNA 4932430I15 gene
Cpgi16065 5 92809027 to 92809491 464 CpG island CpG island 16065
Tssr47326 5 92809332 to 92809371 39 + TSS region transcription start site region 47326
Tssr47327 5 92809372 to 92809436 64 + TSS region transcription start site region 47327
Tssr1548 5 92817827 to 92817832 5 + TSS region transcription start site region 1548
Tssr47328 5 92825811 to 92825851 40 + TSS region transcription start site region 47328
Tssr47329 5 92825901 to 92825925 24 + TSS region transcription start site region 47329
Tssr47330 5 92843671 to 92843675 4 + TSS region transcription start site region 47330
Tssr47331 5 92856431 to 92856443 12 + TSS region transcription start site region 47331
Tssr47332 5 92856454 to 92856465 11 + TSS region transcription start site region 47332
Tssr47333 5 92856471 to 92856511 40 + TSS region transcription start site region 47333
Tssr47334 5 92859443 to 92859472 29 + TSS region transcription start site region 47334
Tssr47335 5 92876363 to 92876368 5 + TSS region transcription start site region 47335
Tssr47336 5 92877687 to 92877691 4 + TSS region transcription start site region 47336
Cpgi16066 5 92897510 to 92898732 1222 CpG island CpG island 16066
Tssr47337 5 92897782 to 92897793 11 + TSS region transcription start site region 47337
Tssr47338 5 92897956 to 92897974 18 + TSS region transcription start site region 47338
Tssr47339 5 92897981 to 92898052 71 + TSS region transcription start site region 47339
Tssr47340 5 92898053 to 92898075 22 + TSS region transcription start site region 47340
Tssr47341 5 92898141 to 92898166 25 + TSS region transcription start site region 47341
Gm42115 5 92899559 to 92902303 2744 - lncRNA gene predicted gene, 42115
Tssr47342 5 92919622 to 92919666 44 + TSS region transcription start site region 47342
Tssr47343 5 92925400 to 92925448 48 + TSS region transcription start site region 47343
Tssr47344 5 92933317 to 92933337 20 + TSS region transcription start site region 47344
Tssr47345 5 92939920 to 92939931 11 + TSS region transcription start site region 47345
Tssr47346 5 92940529 to 92940554 25 + TSS region transcription start site region 47346
Cpgi16067 5 92941479 to 92943203 1724 CpG island CpG island 16067
Tssr47347 5 92955054 to 92955058 4 + TSS region transcription start site region 47347
Tssr47348 5 92962068 to 92962093 25 + TSS region transcription start site region 47348
Tssr47349 5 92962161 to 92962173 12 + TSS region transcription start site region 47349
Tssr51931 5 92964770 to 92964787 17 - TSS region transcription start site region 51931
Cpgi16068 5 92964839 to 92964990 151 CpG island CpG island 16068
Gm36764 5 92988632 to 93009072 20440 - lncRNA gene predicted gene, 36764
Tssr47350 5 93003795 to 93003810 15 + TSS region transcription start site region 47350
Gm6450 5 93003831 to 93004404 573 + pseudogene predicted gene 6450
Gm25521 5 93013032 to 93013139 107 - snRNA gene predicted gene, 25521
Sowahb 5 93041123 to 93045022 3899 - protein coding gene sosondowah ankyrin repeat domain family member B
D5Mit19 5 93042404 to 93042620 216 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 19
Skmw13 5 93042404 to 93042620 216 QTL skeletal muscle weight 13
Cpgi16069 5 93043763 to 93045536 1773 CpG island CpG island 16069
9330159N05Rik 5 93044719 to 93048429 3710 protein coding gene RIKEN cDNA 9330159N05 gene
Tssr51932 5 93045026 to 93045064 38 - TSS region transcription start site region 51932
Gm22915 5 93073861 to 93073996 135 + snoRNA gene predicted gene, 22915
Gm43172 5 93090994 to 93093130 2136 + unclassified gene predicted gene 43172
Cpgi16070 5 93092214 to 93094544 2330 CpG island CpG island 16070
Gm43173 5 93092759 to 93093351 592 - unclassified gene predicted gene 43173
Tssr51933 5 93093119 to 93093137 18 - TSS region transcription start site region 51933
Tssr47351 5 93093428 to 93093444 16 + TSS region transcription start site region 47351
Sept11 5 93093437 to 93176447 83010 + protein coding gene septin 11
Tssr47352 5 93093473 to 93093483 10 + TSS region transcription start site region 47352
Tssr47353 5 93093498 to 93093549 51 + TSS region transcription start site region 47353
Tssr47354 5 93104822 to 93104846 24 + TSS region transcription start site region 47354
Tssr47355 5 93105986 to 93105989 3 + TSS region transcription start site region 47355
Tssr47356 5 93120187 to 93120190 3 + TSS region transcription start site region 47356
Hdlq2 5 93132927 to 93133058 131 QTL HDL QTL 2
Chlq14 5 93132927 to 93133058 131 QTL circulating hormone level QTL 14
D5Mit205 5 93132927 to 93133058 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 205
Cdcs10 5 93132927 to 93133058 131 QTL cytokine deficiency colitis susceptibility 10
Tssr47357 5 93133550 to 93133570 20 + TSS region transcription start site region 47357
Tssr47358 5 93133593 to 93133608 15 + TSS region transcription start site region 47358
Tssr51934 5 93136971 to 93136985 14 - TSS region transcription start site region 51934
Tssr47359 5 93150134 to 93150145 11 + TSS region transcription start site region 47359