Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:92347780-93018751

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Art3 5 92331827 to 92414628 82801 + protein coding gene ADP-ribosyltransferase 3
Cxcl10 5 92346638 to 92348889 2251 - protein coding gene chemokine (C-X-C motif) ligand 10
Tssr51898 5 92347800 to 92347807 7 - TSS region transcription start site region 51898
Tssr51899 5 92347839 to 92347874 35 - TSS region transcription start site region 51899
Tssr47300 5 92347841 to 92347851 10 + TSS region transcription start site region 47300
Tssr51900 5 92348111 to 92348151 40 - TSS region transcription start site region 51900
Tssr51901 5 92348174 to 92348201 27 - TSS region transcription start site region 51901
Tssr51902 5 92348206 to 92348224 18 - TSS region transcription start site region 51902
Tssr51903 5 92348871 to 92348886 15 - TSS region transcription start site region 51903
Cxcl11 5 92359544 to 92363296 3752 - polymorphic pseudogene chemokine (C-X-C motif) ligand 11
Tssr51904 5 92361093 to 92361104 11 - TSS region transcription start site region 51904
Tssr51905 5 92361279 to 92361302 23 - TSS region transcription start site region 51905
Tssr51906 5 92361304 to 92361314 10 - TSS region transcription start site region 51906
Tssr51907 5 92363231 to 92363241 10 - TSS region transcription start site region 51907
Tssr51908 5 92363255 to 92363258 3 - TSS region transcription start site region 51908
Tssr51909 5 92363283 to 92363295 12 - TSS region transcription start site region 51909
Tssr51910 5 92363300 to 92363309 9 - TSS region transcription start site region 51910
Gm2673 5 92363903 to 92365501 1598 + pseudogene predicted gene 2673
Tssr47301 5 92371658 to 92371661 3 + TSS region transcription start site region 47301
Tssr47302 5 92371677 to 92371691 14 + TSS region transcription start site region 47302
Tssr47303 5 92371709 to 92371710 1 + TSS region transcription start site region 47303
Tssr47304 5 92371721 to 92371732 11 + TSS region transcription start site region 47304
Cpgi16058 5 92375451 to 92375791 340 CpG island CpG island 16058
Tssr47305 5 92375591 to 92375602 11 + TSS region transcription start site region 47305
Tssr47306 5 92376954 to 92376970 16 + TSS region transcription start site region 47306
Tssr47307 5 92386879 to 92386895 16 + TSS region transcription start site region 47307
Tssr47308 5 92387673 to 92387769 96 + TSS region transcription start site region 47308
Tssr47309 5 92387770 to 92387779 9 + TSS region transcription start site region 47309
Tssr47310 5 92387870 to 92387892 22 + TSS region transcription start site region 47310
Tssr47311 5 92387916 to 92387927 11 + TSS region transcription start site region 47311
Cpgi16059 5 92392435 to 92393311 876 CpG island CpG island 16059
Tssr47312 5 92392713 to 92392724 11 + TSS region transcription start site region 47312
Tssr47313 5 92392730 to 92392743 13 + TSS region transcription start site region 47313
Tssr47314 5 92398051 to 92398057 6 + TSS region transcription start site region 47314
Nup54 5 92415540 to 92435219 19679 - protein coding gene nucleoporin 54
Gm26039 5 92429785 to 92429928 143 + snoRNA gene predicted gene, 26039
Cpgi16060 5 92434475 to 92435531 1056 CpG island CpG island 16060
Gm42114 5 92434797 to 92436069 1272 + lncRNA gene predicted gene, 42114
Tssr51911 5 92435056 to 92435065 9 - TSS region transcription start site region 51911
Tssr51912 5 92435075 to 92435103 28 - TSS region transcription start site region 51912
Tssr51913 5 92435114 to 92435130 16 - TSS region transcription start site region 51913
Tssr51914 5 92435189 to 92435216 27 - TSS region transcription start site region 51914
Tssr51915 5 92435219 to 92435235 16 - TSS region transcription start site region 51915
Scarb2 5 92441311 to 92505657 64346 - protein coding gene scavenger receptor class B, member 2
Tssr51916 5 92443617 to 92443632 15 - TSS region transcription start site region 51916
Mir6415 5 92458557 to 92458656 99 + miRNA gene microRNA 6415
Tssr51917 5 92470866 to 92470880 14 - TSS region transcription start site region 51917
Tssr51918 5 92470892 to 92470905 13 - TSS region transcription start site region 51918
Tssr51919 5 92490424 to 92490428 4 - TSS region transcription start site region 51919
Tssr51920 5 92500522 to 92500525 3 - TSS region transcription start site region 51920
Tssr51921 5 92501791 to 92501796 5 - TSS region transcription start site region 51921
Cpgi16061 5 92504824 to 92506023 1199 CpG island CpG island 16061
Tssr47315 5 92505030 to 92505039 9 + TSS region transcription start site region 47315
Tssr51922 5 92505473 to 92505489 16 - TSS region transcription start site region 51922
Tssr51923 5 92505501 to 92505516 15 - TSS region transcription start site region 51923
Tssr51924 5 92505518 to 92505666 148 - TSS region transcription start site region 51924
Tssr47316 5 92532919 to 92532921 2 + TSS region transcription start site region 47316
Tssr47317 5 92555035 to 92555070 35 + TSS region transcription start site region 47317
Fam47e 5 92555069 to 92591279 36210 + protein coding gene family with sequence similarity 47, member E
Tssr47318 5 92571523 to 92571543 20 + TSS region transcription start site region 47318
Tssr47319 5 92571544 to 92571563 19 + TSS region transcription start site region 47319
Cpgi16062 5 92602720 to 92603590 870 CpG island CpG island 16062
Tssr47320 5 92603039 to 92603050 11 + TSS region transcription start site region 47320
Stbd1 5 92603051 to 92606579 3528 + protein coding gene starch binding domain 1
Tssr47321 5 92603076 to 92603109 33 + TSS region transcription start site region 47321
Ccdc158 5 92608237 to 92675281 67044 - protein coding gene coiled-coil domain containing 158
Cpgi16063 5 92674934 to 92675640 706 CpG island CpG island 16063
Tssr51925 5 92675139 to 92675145 6 - TSS region transcription start site region 51925
Tssr51926 5 92675215 to 92675218 3 - TSS region transcription start site region 51926
Tssr51927 5 92675233 to 92675249 16 - TSS region transcription start site region 51927
Tssr51928 5 92675253 to 92675287 34 - TSS region transcription start site region 51928
Tssr51929 5 92675429 to 92675446 17 - TSS region transcription start site region 51929
Tssr51930 5 92675834 to 92675882 48 - TSS region transcription start site region 51930
Cpgi16064 5 92682780 to 92683751 971 CpG island CpG island 16064
Tssr47322 5 92682782 to 92682805 23 + TSS region transcription start site region 47322
Tssr47323 5 92683310 to 92683335 25 + TSS region transcription start site region 47323
Shroom3 5 92683435 to 92965318 281883 + protein coding gene shroom family member 3
Tssr47324 5 92683626 to 92683648 22 + TSS region transcription start site region 47324
Tssr47325 5 92684837 to 92684841 4 + TSS region transcription start site region 47325
Gm20500 5 92736205 to 92737442 1237 + sense intronic lncRNA gene predicted gene 20500
D5Mit86.1 5 92737335 to 92737447 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 86.1
D5Mit86 5 92737416 to 92737565 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 86
Mir1961 5 92788451 to 92788562 111 - miRNA gene microRNA 1961
4932430I15Rik 5 92804220 to 92809488 5268 - lincRNA gene RIKEN cDNA 4932430I15 gene
Cpgi16065 5 92809027 to 92809491 464 CpG island CpG island 16065
Tssr47326 5 92809332 to 92809371 39 + TSS region transcription start site region 47326
Tssr47327 5 92809372 to 92809436 64 + TSS region transcription start site region 47327
Tssr1548 5 92817827 to 92817832 5 + TSS region transcription start site region 1548
Tssr47328 5 92825811 to 92825851 40 + TSS region transcription start site region 47328
Tssr47329 5 92825901 to 92825925 24 + TSS region transcription start site region 47329
Tssr47330 5 92843671 to 92843675 4 + TSS region transcription start site region 47330
Tssr47331 5 92856431 to 92856443 12 + TSS region transcription start site region 47331
Tssr47332 5 92856454 to 92856465 11 + TSS region transcription start site region 47332
Tssr47333 5 92856471 to 92856511 40 + TSS region transcription start site region 47333
Tssr47334 5 92859443 to 92859472 29 + TSS region transcription start site region 47334
Tssr47335 5 92876363 to 92876368 5 + TSS region transcription start site region 47335
Tssr47336 5 92877687 to 92877691 4 + TSS region transcription start site region 47336
Cpgi16066 5 92897510 to 92898732 1222 CpG island CpG island 16066
Tssr47337 5 92897782 to 92897793 11 + TSS region transcription start site region 47337
Tssr47338 5 92897956 to 92897974 18 + TSS region transcription start site region 47338
Tssr47339 5 92897981 to 92898052 71 + TSS region transcription start site region 47339
Tssr47340 5 92898053 to 92898075 22 + TSS region transcription start site region 47340
Tssr47341 5 92898141 to 92898166 25 + TSS region transcription start site region 47341
Gm42115 5 92899559 to 92902303 2744 - lncRNA gene predicted gene, 42115
Tssr47342 5 92919622 to 92919666 44 + TSS region transcription start site region 47342
Tssr47343 5 92925400 to 92925448 48 + TSS region transcription start site region 47343
Tssr47344 5 92933317 to 92933337 20 + TSS region transcription start site region 47344
Tssr47345 5 92939920 to 92939931 11 + TSS region transcription start site region 47345
Tssr47346 5 92940529 to 92940554 25 + TSS region transcription start site region 47346
Cpgi16067 5 92941479 to 92943203 1724 CpG island CpG island 16067
Tssr47347 5 92955054 to 92955058 4 + TSS region transcription start site region 47347
Tssr47348 5 92962068 to 92962093 25 + TSS region transcription start site region 47348
Tssr47349 5 92962161 to 92962173 12 + TSS region transcription start site region 47349
Tssr51931 5 92964770 to 92964787 17 - TSS region transcription start site region 51931
Cpgi16068 5 92964839 to 92964990 151 CpG island CpG island 16068
Gm36764 5 92988632 to 93009072 20440 - lncRNA gene predicted gene, 36764
Tssr47350 5 93003795 to 93003810 15 + TSS region transcription start site region 47350
Gm6450 5 93003831 to 93004404 573 + pseudogene predicted gene 6450
Gm25521 5 93013032 to 93013139 107 - snRNA gene predicted gene, 25521