Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:92341311-92605657

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Art3 5 92331827 to 92414628 82801 + protein coding gene ADP-ribosyltransferase 3
Cxcl10 5 92346638 to 92348889 2251 - protein coding gene chemokine (C-X-C motif) ligand 10
Tssr47298 5 92346640 to 92346647 7 + TSS region transcription start site region 47298
Tssr51877 5 92346814 to 92346817 3 - TSS region transcription start site region 51877
Tssr51878 5 92346847 to 92346858 11 - TSS region transcription start site region 51878
Tssr51879 5 92346900 to 92346914 14 - TSS region transcription start site region 51879
Tssr51880 5 92346934 to 92346939 5 - TSS region transcription start site region 51880
Tssr47299 5 92346992 to 92347025 33 + TSS region transcription start site region 47299
Tssr51881 5 92346992 to 92346995 3 - TSS region transcription start site region 51881
Tssr51882 5 92347000 to 92347005 5 - TSS region transcription start site region 51882
Tssr51883 5 92347014 to 92347031 17 - TSS region transcription start site region 51883
Tssr51884 5 92347034 to 92347055 21 - TSS region transcription start site region 51884
Tssr51885 5 92347060 to 92347092 32 - TSS region transcription start site region 51885
Tssr51886 5 92347102 to 92347118 16 - TSS region transcription start site region 51886
Tssr51887 5 92347186 to 92347197 11 - TSS region transcription start site region 51887
Tssr51888 5 92347226 to 92347237 11 - TSS region transcription start site region 51888
Tssr51889 5 92347266 to 92347285 19 - TSS region transcription start site region 51889
Tssr51890 5 92347289 to 92347298 9 - TSS region transcription start site region 51890
Tssr51891 5 92347301 to 92347317 16 - TSS region transcription start site region 51891
Tssr51892 5 92347327 to 92347334 7 - TSS region transcription start site region 51892
Tssr51893 5 92347352 to 92347374 22 - TSS region transcription start site region 51893
Tssr51894 5 92347376 to 92347386 10 - TSS region transcription start site region 51894
Tssr51895 5 92347512 to 92347520 8 - TSS region transcription start site region 51895
Tssr51896 5 92347620 to 92347631 11 - TSS region transcription start site region 51896
Tssr51897 5 92347721 to 92347737 16 - TSS region transcription start site region 51897
Tssr51898 5 92347800 to 92347807 7 - TSS region transcription start site region 51898
Tssr51899 5 92347839 to 92347874 35 - TSS region transcription start site region 51899
Tssr47300 5 92347841 to 92347851 10 + TSS region transcription start site region 47300
Tssr51900 5 92348111 to 92348151 40 - TSS region transcription start site region 51900
Tssr51901 5 92348174 to 92348201 27 - TSS region transcription start site region 51901
Tssr51902 5 92348206 to 92348224 18 - TSS region transcription start site region 51902
Tssr51903 5 92348871 to 92348886 15 - TSS region transcription start site region 51903
Cxcl11 5 92359544 to 92363296 3752 - polymorphic pseudogene chemokine (C-X-C motif) ligand 11
Tssr51904 5 92361093 to 92361104 11 - TSS region transcription start site region 51904
Tssr51905 5 92361279 to 92361302 23 - TSS region transcription start site region 51905
Tssr51906 5 92361304 to 92361314 10 - TSS region transcription start site region 51906
Tssr51907 5 92363231 to 92363241 10 - TSS region transcription start site region 51907
Tssr51908 5 92363255 to 92363258 3 - TSS region transcription start site region 51908
Tssr51909 5 92363283 to 92363295 12 - TSS region transcription start site region 51909
Tssr51910 5 92363300 to 92363309 9 - TSS region transcription start site region 51910
Gm2673 5 92363903 to 92365501 1598 + pseudogene predicted gene 2673
Tssr47301 5 92371658 to 92371661 3 + TSS region transcription start site region 47301
Tssr47302 5 92371677 to 92371691 14 + TSS region transcription start site region 47302
Tssr47303 5 92371709 to 92371710 1 + TSS region transcription start site region 47303
Tssr47304 5 92371721 to 92371732 11 + TSS region transcription start site region 47304
Cpgi16058 5 92375451 to 92375791 340 CpG island CpG island 16058
Tssr47305 5 92375591 to 92375602 11 + TSS region transcription start site region 47305
Tssr47306 5 92376954 to 92376970 16 + TSS region transcription start site region 47306
Tssr47307 5 92386879 to 92386895 16 + TSS region transcription start site region 47307
Tssr47308 5 92387673 to 92387769 96 + TSS region transcription start site region 47308
Tssr47309 5 92387770 to 92387779 9 + TSS region transcription start site region 47309
Tssr47310 5 92387870 to 92387892 22 + TSS region transcription start site region 47310
Tssr47311 5 92387916 to 92387927 11 + TSS region transcription start site region 47311
Cpgi16059 5 92392435 to 92393311 876 CpG island CpG island 16059
Tssr47312 5 92392713 to 92392724 11 + TSS region transcription start site region 47312
Tssr47313 5 92392730 to 92392743 13 + TSS region transcription start site region 47313
Tssr47314 5 92398051 to 92398057 6 + TSS region transcription start site region 47314
Nup54 5 92415540 to 92435219 19679 - protein coding gene nucleoporin 54
Gm26039 5 92429785 to 92429928 143 + snoRNA gene predicted gene, 26039
Cpgi16060 5 92434475 to 92435531 1056 CpG island CpG island 16060
Gm42114 5 92434797 to 92436069 1272 + lncRNA gene predicted gene, 42114
Tssr51911 5 92435056 to 92435065 9 - TSS region transcription start site region 51911
Tssr51912 5 92435075 to 92435103 28 - TSS region transcription start site region 51912
Tssr51913 5 92435114 to 92435130 16 - TSS region transcription start site region 51913
Tssr51914 5 92435189 to 92435216 27 - TSS region transcription start site region 51914
Tssr51915 5 92435219 to 92435235 16 - TSS region transcription start site region 51915
Scarb2 5 92441311 to 92505657 64346 - protein coding gene scavenger receptor class B, member 2
Tssr51916 5 92443617 to 92443632 15 - TSS region transcription start site region 51916
Mir6415 5 92458557 to 92458656 99 + miRNA gene microRNA 6415
Tssr51917 5 92470866 to 92470880 14 - TSS region transcription start site region 51917
Tssr51918 5 92470892 to 92470905 13 - TSS region transcription start site region 51918
Tssr51919 5 92490424 to 92490428 4 - TSS region transcription start site region 51919
Tssr51920 5 92500522 to 92500525 3 - TSS region transcription start site region 51920
Tssr51921 5 92501791 to 92501796 5 - TSS region transcription start site region 51921
Cpgi16061 5 92504824 to 92506023 1199 CpG island CpG island 16061
Tssr47315 5 92505030 to 92505039 9 + TSS region transcription start site region 47315
Tssr51922 5 92505473 to 92505489 16 - TSS region transcription start site region 51922
Tssr51923 5 92505501 to 92505516 15 - TSS region transcription start site region 51923
Tssr51924 5 92505518 to 92505666 148 - TSS region transcription start site region 51924
Tssr47316 5 92532919 to 92532921 2 + TSS region transcription start site region 47316
Tssr47317 5 92555035 to 92555070 35 + TSS region transcription start site region 47317
Fam47e 5 92555069 to 92591279 36210 + protein coding gene family with sequence similarity 47, member E
Tssr47318 5 92571523 to 92571543 20 + TSS region transcription start site region 47318
Tssr47319 5 92571544 to 92571563 19 + TSS region transcription start site region 47319
Cpgi16062 5 92602720 to 92603590 870 CpG island CpG island 16062
Tssr47320 5 92603039 to 92603050 11 + TSS region transcription start site region 47320
Stbd1 5 92603051 to 92606579 3528 + protein coding gene starch binding domain 1
Tssr47321 5 92603076 to 92603109 33 + TSS region transcription start site region 47321