Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:92125003-92495016

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D430040L24Rik 5 92126174 to 92129749 3575 + lncRNA gene RIKEN cDNA D430040L24 gene
Tssr47281 5 92127293 to 92127316 23 + TSS region transcription start site region 47281
Tssr47282 5 92127339 to 92127349 10 + TSS region transcription start site region 47282
Tssr47283 5 92127350 to 92127357 7 + TSS region transcription start site region 47283
Cpgi16052 5 92137467 to 92138643 1176 CpG island CpG island 16052
Tssr51846 5 92137637 to 92137702 65 - TSS region transcription start site region 51846
Tssr51847 5 92137733 to 92137762 29 - TSS region transcription start site region 51847
Tssr51848 5 92137769 to 92137786 17 - TSS region transcription start site region 51848
Tssr47284 5 92137849 to 92137870 21 + TSS region transcription start site region 47284
Tssr47285 5 92137896 to 92137939 43 + TSS region transcription start site region 47285
Uso1 5 92137938 to 92202798 64860 + protein coding gene USO1 vesicle docking factor
Tssr47286 5 92137940 to 92137974 34 + TSS region transcription start site region 47286
Gm15710 5 92140294 to 92140929 635 - pseudogene predicted gene 15710
Tssr51849 5 92140965 to 92140977 12 - TSS region transcription start site region 51849
Gm43040 5 92191360 to 92191917 557 - unclassified gene predicted gene 43040
Gm25290 5 92193322 to 92193465 143 + snoRNA gene predicted gene, 25290
U90926 5 92209895 to 92215408 5513 - protein coding gene cDNA sequence U90926
Gm42113 5 92210177 to 92212757 2580 + lncRNA gene predicted gene, 42113
Tssr51850 5 92215345 to 92215354 9 - TSS region transcription start site region 51850
Gm42112 5 92216563 to 92224008 7445 + lncRNA gene predicted gene, 42112
Ppef2 5 92226679 to 92256278 29599 - protein coding gene protein phosphatase, EF hand calcium-binding domain 2
Cpgi16053 5 92239817 to 92240085 268 CpG island CpG island 16053
D5Mit87 5 92250640 to 92250805 165 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 87
Cpgi16054 5 92253037 to 92253319 282 CpG island CpG island 16054
Tssr51851 5 92256293 to 92256304 11 - TSS region transcription start site region 51851
Tssr51852 5 92256308 to 92256330 22 - TSS region transcription start site region 51852
Tssr51853 5 92256333 to 92256340 7 - TSS region transcription start site region 51853
Naaa 5 92257659 to 92278170 20511 - protein coding gene N-acylethanolamine acid amidase
Tssr51854 5 92262781 to 92262788 7 - TSS region transcription start site region 51854
Tssr51855 5 92262792 to 92262799 7 - TSS region transcription start site region 51855
Tssr51856 5 92263654 to 92263675 21 - TSS region transcription start site region 51856
Cpgi16055 5 92276896 to 92277184 288 CpG island CpG island 16055
Cpgi16056 5 92277558 to 92278313 755 CpG island CpG island 16056
Tssr51857 5 92278139 to 92278150 11 - TSS region transcription start site region 51857
Tssr51858 5 92278155 to 92278171 16 - TSS region transcription start site region 51858
Tssr51859 5 92278175 to 92278186 11 - TSS region transcription start site region 51859
Tssr51860 5 92278188 to 92278204 16 - TSS region transcription start site region 51860
Tssr51861 5 92278217 to 92278222 5 - TSS region transcription start site region 51861
Sdad1 5 92284010 to 92310024 26014 - protein coding gene SDA1 domain containing 1
Gm43599 5 92290052 to 92302760 12708 + antisense lncRNA gene predicted gene 43599
Gm23031 5 92302174 to 92302292 118 + snRNA gene predicted gene, 23031
Cpgi16057 5 92309457 to 92310172 715 CpG island CpG island 16057
Tssr51862 5 92309948 to 92310000 52 - TSS region transcription start site region 51862
Tssr51863 5 92310003 to 92310016 13 - TSS region transcription start site region 51863
Cxcl9 5 92321347 to 92328079 6732 - protein coding gene chemokine (C-X-C motif) ligand 9
Tssr51864 5 92322732 to 92322742 10 - TSS region transcription start site region 51864
Tssr51865 5 92322810 to 92322826 16 - TSS region transcription start site region 51865
Tssr47287 5 92322984 to 92322991 7 + TSS region transcription start site region 47287
Tssr51866 5 92323099 to 92323106 7 - TSS region transcription start site region 51866
Tssr51867 5 92323691 to 92323708 17 - TSS region transcription start site region 51867
Tssr51868 5 92323747 to 92323754 7 - TSS region transcription start site region 51868
Tssr47288 5 92323767 to 92323779 12 + TSS region transcription start site region 47288
Tssr47289 5 92323784 to 92323789 5 + TSS region transcription start site region 47289
Tssr51869 5 92323793 to 92323796 3 - TSS region transcription start site region 51869
Tssr47290 5 92323796 to 92323804 8 + TSS region transcription start site region 47290
Tssr51870 5 92323835 to 92323846 11 - TSS region transcription start site region 51870
Tssr47291 5 92323837 to 92323846 9 + TSS region transcription start site region 47291
Tssr51871 5 92323869 to 92323881 12 - TSS region transcription start site region 51871
Tssr51872 5 92325112 to 92325134 22 - TSS region transcription start site region 51872
Tssr47292 5 92325117 to 92325127 10 + TSS region transcription start site region 47292
Tssr47293 5 92326765 to 92326777 12 + TSS region transcription start site region 47293
Tssr51873 5 92326790 to 92326800 10 - TSS region transcription start site region 51873
Tssr1547 5 92326802 to 92326803 1 - TSS region transcription start site region 1547
Tssr47294 5 92326802 to 92326820 18 + TSS region transcription start site region 47294
Tssr51874 5 92326815 to 92326830 15 - TSS region transcription start site region 51874
Tssr51875 5 92328042 to 92328065 23 - TSS region transcription start site region 51875
Tssr51876 5 92328068 to 92328086 18 - TSS region transcription start site region 51876
Tssr47295 5 92331793 to 92331817 24 + TSS region transcription start site region 47295
Tssr47296 5 92331818 to 92331827 9 + TSS region transcription start site region 47296
Art3 5 92331827 to 92414628 82801 + protein coding gene ADP-ribosyltransferase 3
Tssr47297 5 92331828 to 92331847 19 + TSS region transcription start site region 47297
Cxcl10 5 92346638 to 92348889 2251 - protein coding gene chemokine (C-X-C motif) ligand 10
Tssr47298 5 92346640 to 92346647 7 + TSS region transcription start site region 47298
Tssr51877 5 92346814 to 92346817 3 - TSS region transcription start site region 51877
Tssr51878 5 92346847 to 92346858 11 - TSS region transcription start site region 51878
Tssr51879 5 92346900 to 92346914 14 - TSS region transcription start site region 51879
Tssr51880 5 92346934 to 92346939 5 - TSS region transcription start site region 51880
Tssr47299 5 92346992 to 92347025 33 + TSS region transcription start site region 47299
Tssr51881 5 92346992 to 92346995 3 - TSS region transcription start site region 51881
Tssr51882 5 92347000 to 92347005 5 - TSS region transcription start site region 51882
Tssr51883 5 92347014 to 92347031 17 - TSS region transcription start site region 51883
Tssr51884 5 92347034 to 92347055 21 - TSS region transcription start site region 51884
Tssr51885 5 92347060 to 92347092 32 - TSS region transcription start site region 51885
Tssr51886 5 92347102 to 92347118 16 - TSS region transcription start site region 51886
Tssr51887 5 92347186 to 92347197 11 - TSS region transcription start site region 51887
Tssr51888 5 92347226 to 92347237 11 - TSS region transcription start site region 51888
Tssr51889 5 92347266 to 92347285 19 - TSS region transcription start site region 51889
Tssr51890 5 92347289 to 92347298 9 - TSS region transcription start site region 51890
Tssr51891 5 92347301 to 92347317 16 - TSS region transcription start site region 51891
Tssr51892 5 92347327 to 92347334 7 - TSS region transcription start site region 51892
Tssr51893 5 92347352 to 92347374 22 - TSS region transcription start site region 51893
Tssr51894 5 92347376 to 92347386 10 - TSS region transcription start site region 51894
Tssr51895 5 92347512 to 92347520 8 - TSS region transcription start site region 51895
Tssr51896 5 92347620 to 92347631 11 - TSS region transcription start site region 51896
Tssr51897 5 92347721 to 92347737 16 - TSS region transcription start site region 51897
Tssr51898 5 92347800 to 92347807 7 - TSS region transcription start site region 51898
Tssr51899 5 92347839 to 92347874 35 - TSS region transcription start site region 51899
Tssr47300 5 92347841 to 92347851 10 + TSS region transcription start site region 47300
Tssr51900 5 92348111 to 92348151 40 - TSS region transcription start site region 51900
Tssr51901 5 92348174 to 92348201 27 - TSS region transcription start site region 51901
Tssr51902 5 92348206 to 92348224 18 - TSS region transcription start site region 51902
Tssr51903 5 92348871 to 92348886 15 - TSS region transcription start site region 51903
Cxcl11 5 92359544 to 92363296 3752 - polymorphic pseudogene chemokine (C-X-C motif) ligand 11
Tssr51904 5 92361093 to 92361104 11 - TSS region transcription start site region 51904
Tssr51905 5 92361279 to 92361302 23 - TSS region transcription start site region 51905
Tssr51906 5 92361304 to 92361314 10 - TSS region transcription start site region 51906
Tssr51907 5 92363231 to 92363241 10 - TSS region transcription start site region 51907
Tssr51908 5 92363255 to 92363258 3 - TSS region transcription start site region 51908
Tssr51909 5 92363283 to 92363295 12 - TSS region transcription start site region 51909
Tssr51910 5 92363300 to 92363309 9 - TSS region transcription start site region 51910
Gm2673 5 92363903 to 92365501 1598 + pseudogene predicted gene 2673
Tssr47301 5 92371658 to 92371661 3 + TSS region transcription start site region 47301
Tssr47302 5 92371677 to 92371691 14 + TSS region transcription start site region 47302
Tssr47303 5 92371709 to 92371710 1 + TSS region transcription start site region 47303
Tssr47304 5 92371721 to 92371732 11 + TSS region transcription start site region 47304
Cpgi16058 5 92375451 to 92375791 340 CpG island CpG island 16058
Tssr47305 5 92375591 to 92375602 11 + TSS region transcription start site region 47305
Tssr47306 5 92376954 to 92376970 16 + TSS region transcription start site region 47306
Tssr47307 5 92386879 to 92386895 16 + TSS region transcription start site region 47307
Tssr47308 5 92387673 to 92387769 96 + TSS region transcription start site region 47308
Tssr47309 5 92387770 to 92387779 9 + TSS region transcription start site region 47309
Tssr47310 5 92387870 to 92387892 22 + TSS region transcription start site region 47310
Tssr47311 5 92387916 to 92387927 11 + TSS region transcription start site region 47311
Cpgi16059 5 92392435 to 92393311 876 CpG island CpG island 16059
Tssr47312 5 92392713 to 92392724 11 + TSS region transcription start site region 47312
Tssr47313 5 92392730 to 92392743 13 + TSS region transcription start site region 47313
Tssr47314 5 92398051 to 92398057 6 + TSS region transcription start site region 47314
Nup54 5 92415540 to 92435219 19679 - protein coding gene nucleoporin 54
Gm26039 5 92429785 to 92429928 143 + snoRNA gene predicted gene, 26039
Cpgi16060 5 92434475 to 92435531 1056 CpG island CpG island 16060
Gm42114 5 92434797 to 92436069 1272 + lncRNA gene predicted gene, 42114
Tssr51911 5 92435056 to 92435065 9 - TSS region transcription start site region 51911
Tssr51912 5 92435075 to 92435103 28 - TSS region transcription start site region 51912
Tssr51913 5 92435114 to 92435130 16 - TSS region transcription start site region 51913
Tssr51914 5 92435189 to 92435216 27 - TSS region transcription start site region 51914
Tssr51915 5 92435219 to 92435235 16 - TSS region transcription start site region 51915
Scarb2 5 92441311 to 92505657 64346 - protein coding gene scavenger receptor class B, member 2
Tssr51916 5 92443617 to 92443632 15 - TSS region transcription start site region 51916
Mir6415 5 92458557 to 92458656 99 + miRNA gene microRNA 6415
Tssr51917 5 92470866 to 92470880 14 - TSS region transcription start site region 51917
Tssr51918 5 92470892 to 92470905 13 - TSS region transcription start site region 51918
Tssr51919 5 92490424 to 92490428 4 - TSS region transcription start site region 51919