Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:92111563-92329008

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr51845 5 92112248 to 92112276 28 - TSS region transcription start site region 51845
Tssr47279 5 92112996 to 92113015 19 + TSS region transcription start site region 47279
Tssr47280 5 92113027 to 92113036 9 + TSS region transcription start site region 47280
Gm24931 5 92118177 to 92118283 106 - rRNA gene predicted gene, 24931
D430040L24Rik 5 92126174 to 92129749 3575 + lncRNA gene RIKEN cDNA D430040L24 gene
Tssr47281 5 92127293 to 92127316 23 + TSS region transcription start site region 47281
Tssr47282 5 92127339 to 92127349 10 + TSS region transcription start site region 47282
Tssr47283 5 92127350 to 92127357 7 + TSS region transcription start site region 47283
Cpgi16052 5 92137467 to 92138643 1176 CpG island CpG island 16052
Tssr51846 5 92137637 to 92137702 65 - TSS region transcription start site region 51846
Tssr51847 5 92137733 to 92137762 29 - TSS region transcription start site region 51847
Tssr51848 5 92137769 to 92137786 17 - TSS region transcription start site region 51848
Tssr47284 5 92137849 to 92137870 21 + TSS region transcription start site region 47284
Tssr47285 5 92137896 to 92137939 43 + TSS region transcription start site region 47285
Uso1 5 92137938 to 92202798 64860 + protein coding gene USO1 vesicle docking factor
Tssr47286 5 92137940 to 92137974 34 + TSS region transcription start site region 47286
Gm15710 5 92140294 to 92140929 635 - pseudogene predicted gene 15710
Tssr51849 5 92140965 to 92140977 12 - TSS region transcription start site region 51849
Gm43040 5 92191360 to 92191917 557 - unclassified gene predicted gene 43040
Gm25290 5 92193322 to 92193465 143 + snoRNA gene predicted gene, 25290
U90926 5 92209895 to 92215408 5513 - protein coding gene cDNA sequence U90926
Gm42113 5 92210177 to 92212757 2580 + lncRNA gene predicted gene, 42113
Tssr51850 5 92215345 to 92215354 9 - TSS region transcription start site region 51850
Gm42112 5 92216563 to 92224008 7445 + lncRNA gene predicted gene, 42112
Ppef2 5 92226679 to 92256278 29599 - protein coding gene protein phosphatase, EF hand calcium-binding domain 2
Cpgi16053 5 92239817 to 92240085 268 CpG island CpG island 16053
D5Mit87 5 92250640 to 92250805 165 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 87
Cpgi16054 5 92253037 to 92253319 282 CpG island CpG island 16054
Tssr51851 5 92256293 to 92256304 11 - TSS region transcription start site region 51851
Tssr51852 5 92256308 to 92256330 22 - TSS region transcription start site region 51852
Tssr51853 5 92256333 to 92256340 7 - TSS region transcription start site region 51853
Naaa 5 92257659 to 92278170 20511 - protein coding gene N-acylethanolamine acid amidase
Tssr51854 5 92262781 to 92262788 7 - TSS region transcription start site region 51854
Tssr51855 5 92262792 to 92262799 7 - TSS region transcription start site region 51855
Tssr51856 5 92263654 to 92263675 21 - TSS region transcription start site region 51856
Cpgi16055 5 92276896 to 92277184 288 CpG island CpG island 16055
Cpgi16056 5 92277558 to 92278313 755 CpG island CpG island 16056
Tssr51857 5 92278139 to 92278150 11 - TSS region transcription start site region 51857
Tssr51858 5 92278155 to 92278171 16 - TSS region transcription start site region 51858
Tssr51859 5 92278175 to 92278186 11 - TSS region transcription start site region 51859
Tssr51860 5 92278188 to 92278204 16 - TSS region transcription start site region 51860
Tssr51861 5 92278217 to 92278222 5 - TSS region transcription start site region 51861
Sdad1 5 92284010 to 92310024 26014 - protein coding gene SDA1 domain containing 1
Gm43599 5 92290052 to 92302760 12708 + antisense lncRNA gene predicted gene 43599
Gm23031 5 92302174 to 92302292 118 + snRNA gene predicted gene, 23031
Cpgi16057 5 92309457 to 92310172 715 CpG island CpG island 16057
Tssr51862 5 92309948 to 92310000 52 - TSS region transcription start site region 51862
Tssr51863 5 92310003 to 92310016 13 - TSS region transcription start site region 51863
Cxcl9 5 92321347 to 92328079 6732 - protein coding gene chemokine (C-X-C motif) ligand 9
Tssr51864 5 92322732 to 92322742 10 - TSS region transcription start site region 51864
Tssr51865 5 92322810 to 92322826 16 - TSS region transcription start site region 51865
Tssr47287 5 92322984 to 92322991 7 + TSS region transcription start site region 47287
Tssr51866 5 92323099 to 92323106 7 - TSS region transcription start site region 51866
Tssr51867 5 92323691 to 92323708 17 - TSS region transcription start site region 51867
Tssr51868 5 92323747 to 92323754 7 - TSS region transcription start site region 51868
Tssr47288 5 92323767 to 92323779 12 + TSS region transcription start site region 47288
Tssr47289 5 92323784 to 92323789 5 + TSS region transcription start site region 47289
Tssr51869 5 92323793 to 92323796 3 - TSS region transcription start site region 51869
Tssr47290 5 92323796 to 92323804 8 + TSS region transcription start site region 47290
Tssr51870 5 92323835 to 92323846 11 - TSS region transcription start site region 51870
Tssr47291 5 92323837 to 92323846 9 + TSS region transcription start site region 47291
Tssr51871 5 92323869 to 92323881 12 - TSS region transcription start site region 51871
Tssr51872 5 92325112 to 92325134 22 - TSS region transcription start site region 51872
Tssr47292 5 92325117 to 92325127 10 + TSS region transcription start site region 47292
Tssr47293 5 92326765 to 92326777 12 + TSS region transcription start site region 47293
Tssr51873 5 92326790 to 92326800 10 - TSS region transcription start site region 51873
Tssr1547 5 92326802 to 92326803 1 - TSS region transcription start site region 1547
Tssr47294 5 92326802 to 92326820 18 + TSS region transcription start site region 47294
Tssr51874 5 92326815 to 92326830 15 - TSS region transcription start site region 51874
Tssr51875 5 92328042 to 92328065 23 - TSS region transcription start site region 51875
Tssr51876 5 92328068 to 92328086 18 - TSS region transcription start site region 51876